The dTDP-4-dehydro-6-deoxyglucose reductase encoding fcd gene is part of the surface layer glycoprotein glycosylation gene cluster of Geobacillus tepidamans GS5-97T

Glycobiology

Volumn 17, Issue 4, 2007, Pages 433-443

  Zayni, Sonja ^a   Steiner, Kerstin ^a   Pföstl, Andreas ^a,c   Hofinger, Andreas ^b   Kosma, Paul ^b   Schäffer, Christina ^a   Messner, Paul ^a  

^a Department Zentrum für NanoBiotechnologie ^*

^b UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^c Sonn and Partner   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; FUCOSE; GLUCOSE; GLYCOPROTEIN; HYDROLYASE; NUCLEOTIDE DERIVATIVE; OXIDOREDUCTASE; SERINE; SPACER DNA; THREONINE; THYMIDINE DIPHOSPHATE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL CHROMOSOME; CARBON NUCLEAR MAGNETIC RESONANCE; CELL SURFACE; CHROMOSOME WALKING; CONTROLLED STUDY; ENZYME ANALYSIS; ENZYME GLYCOSYLATION; ENZYME SYNTHESIS; GENE CLUSTER; GENE LOCATION; GENETIC CODE; GENETIC IDENTIFICATION; GEOBACILLUS; GEOBACILLUS STEAROTHERMOPHILUS; GRAM POSITIVE BACTERIUM; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IN VITRO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; QUADRUPOLE MASS SPECTROMETRY; STRUCTURAL GENE; TIME OF FLIGHT MASS SPECTROMETRY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CONSENSUS SEQUENCE; GEOBACTER; GLYCOSYLATION; MAGNETIC RESONANCE SPECTROSCOPY; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OPEN READING FRAMES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUGAR ALCOHOL DEHYDROGENASES;

GEOBACILLUS STEAROTHERMOPHILUS; GEOBACILLUS TEPIDAMANS; POSIBACTERIA; PROKARYOTA;

EID: 33947283197     PISSN: 09596658     EISSN: 14602423     Source Type: Journal    
DOI: 10.1093/glycob/cwl084     Document Type: Article

References (38)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. 2+-dependent dimerization mode. Structure. 10:773-786.
3. Corpet F. 1988. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16:10881-10890.
4. Feng L, Senchenkova SN, Yang J, Shashkov AS, Tao J, Guo H, Cheng J, Ren Y, Knirel YA, Reeves PR, et al. 2004. Synthesis of the heteropolysaccharide O antigen of Escherichia coli O52 requires an ABC transporter: Structural and genetic evidence. J Bacteriol. 186:4510-4519.
5. Flowers HM. 1981. Chemistry and biochemistry of D- and L-fucose. Adv Carbohydr Chem Biochem. 39:279-345.
6. Giraud M-F, Naismith JH. 2000. The rhamnose pathway. Curr Opin Struct Biol. 10:687-696.
7. Graninger M, Nidetzky B, Heinrichs DE, Whitfield C, Messner P. 1999. Characterization of dTDP-4-dehydrorhamnose 3,5-epimerase and dTDP-4- dehydrorhamnose reductase, required for dTDP-L-rhamnose biosynthesis in Salmonella enterica Serovar Typhimurium LT2. J Biol Chem. 274:25069-25077.
8. T. J Biol Chem. 280:20292-20299.
9. Kaplan JB, Perry MB, MacLean LL, Furgang D, Wilson ME, Fine DH. 2001. Structural and genetic analyses of O polysaccharide from A. actinomycetemcomitans serotype f. Infect Immun. 69:5375-5384.
10. Keenleyside WJ, Whitfield C. 1999. Genetics and biosynthesis of lipoplysaccharides. In: Brade H, Opal SN, Vogel SN, Morrison DC, editors, Endotoxins in health and disease. New York: Marcel Dekker; pp. 331-358.
11. T. J Biol Chem. 276:5577-5583.
12. Kneidinger B, Graninger M, Messner P. 2001. Chromosome walking by cloning of distinct PCR fragments. Biotechniques. 30:248-249.
13. Lee YC. 1990. High-performance anion-exchange chromatography for carbohydrate analysis. Anal Biochem. 189:151-162.
14. Marchler-Bauer A, Bryant SH. 2004. CD-Search: Protein domain annotations on the fly. Nucleic Acids Res. 32:W327-W331.
15. Martin A, Ruggiero-Lopez D, Broquet P, Richard M, Louisot P. 1989. Highperformance liquid chromatographic study of GDP-mannose and GDP-fucose metabolism. J Chromatogr. 497:319-325.
16. Messner P, Christian R, Neuninger C, Schulz G. 1995. Similarity of "core" structures in two different glycans of tyrosine-linked eubacterial S-layer glycoproteins. J Bacteriol. 177:2188-2193.
17. Messner P, Schäffer C. 2003. Prokaryotic glycoproteins. In: Herz W, Falk H, Kirby GW., editors. Progress in the chemistry of organic natural products. vol. 85. Wien: Springer-Verlag; pp. 51-124.
18. Naundorf A, Klaffke W. 1996. Substrate specificity of native dTDP-D-glucose-4,6-dehydratase: Chemo-enzymatic syntheses of artificial and naturally occurring deoxy sugars. Carbohydr Res. 285:141-150.
19. Novotny R, Pfoestl A, Messner P, Schäffer C. 2004. Genetic organization of chromosomal S-layer glycan biosynthesis loci of Bacillaceae. Glycoconj. J. 20:435-447.
20. Novotny R, Schäffer C, Strauss J, Messner P. 2004. S-layer glycan-specific loci on the chromosome of Geobacillus stearothermophilus NRS 2004/3a and dTDP-L-rhamnose biosynthesis potential of G. stearothermophilus strains. Microbiology. 150:953-965.
21. Pohlentz G, Kölbl S, Peter-Katalinić J. 2005. High sequence coverage by in-capillary proteolysis of native proteins and simultaneous analysis of the resulting peptides by nanoelectrospray ionization-mass spectrometry and tandem mass spectrometry. Proteomics. 5:1758-1763.
22. Raetz CRH, Whitfield C. 2002. Lipopolysaccharide endotoxins. Annu Rev Biochem. 71:635-700.
23. Ravenscroft N, Walker SG, Dutton GGS, Smit J. 1991. Identification, isolation, and structural studies of extracellular polysaccharides produced by Caulobacter crescentus. J Bacteriol. 173:5677-5684.
24. Reeves PR, Hobbes M, Valvano MA, Skurnik M, Whitfield C, Coplin D, Kido N, Klena J, Maskell D, Raetz CRH, et al. 1996. Bacterial polysaccharide synthesis and gene nomenclature. Trends Microbiol. 4:495-503.
25. Sambrook J, Russell DW. 2001. Molecular cloning: A laboratory manual. 3rd ed. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
26. Sato N, Nakazawa F, Ito T, Hoshino T, Hoshino E. 2003. The structure of the antigenic polysaccharide produced by Eubacterium saburreum T15. Carbohydr Res. 338:923-930.
27. Schäffer C, Messner P. 2004. Surface-layer glycoproteins: An example for the diversity of bacterial glycosylation with promising impacts on nanobiotechnology. Glycobiology. 14:31R-42R.
28. Schäffer C, Wugeditsch T, Kählig H, Scheberl A, Zayni S, Messner P. 2002. The surface layer (S-layer) glycoprotein of Geobacillus stearothermophilus NRS 2004/3a. Analysis of its glycosylation. J Biol Chem. 277: 6230-6239.
29. Shibaev VN. 1986. Biosynthesis of bacterial polysaccharide chains composed of repeating units. Adv Carbohydr Chem Biochem. 44:277-339.
30. Sleytr UB, Messner P, Pum D, Sára M. 1993. Crystalline bacterial cell surface layers. Mol Microbiol. 10:911-916.
31. Sleytr UB, Messner P, Pum D, Sára M. 1999. Crystalline bacterial cell surface layers (S-layers): From supramolecular cell structure to biomimetics and nanotechnology. Angew Chem Int Ed Engl. 38:1034-1054.
32. Steiner K. 2006. Unravelling details of the S-layer glycoprotein of Geobacillus stearothermophilus NRS 2004/3a [dissertation]. Vienna, Austria: University of Natural Resources and Applied Life Sciences.
33. Steiner K, Pohlentz G, Dreisewerd K, Berkenkamp S, Messner P, Peter-Katalinić J, Schäffer C. 2006. New insights into the glycosylation of the surface layer protein SgsE from Geobacillus stearothermophilus NRS 2004/3a. J Bacteriol. 181:7914-7921.
34. Taggi AE, Meinwald J, Schroeder FC. 2004. A new approach to natural products discovery exemplified by the identification of sulfated nucleosides in spider venom. J Am Chem Soc. 126:10364-10369.
35. Wang L, Romana LK, Reeves PR. 1992. Molecular analysis of a Salmonella enterica group E1 rfb gene cluster: O antigen and the genetic basis of the major polymorphism. Genetics. 130:429-443.
36. Weitnauer G, Hauser G, Hofmann C, Linder U, Boll R, Pelz K, Glaser SJ, Bechthold A. 2004. Novel avilamycin derivatives with improved polarity generated by targeted gene disruption. Chem Biol. 11: 1403-1411.
37. Yoshida Y, Nakano Y, Yamashita Y, Koga T. 1998. Identification of a genetic locus essential for serotype b-specific antigen synthesis in A. actinomycetemcomitans. Infect Immun. 66:107-114.
38. Yoshida Y, Nakano Y, Nezu T, Yamashita Y, Koga T. 1999. A novel NDP-6-deoxyhexosyl-4-ulose reductase in the pathway for the synthesis of thymidine diphosphate-D-fucose. J Biol Chem. 274: 16933-16939.