Contrasting geographic distribution profiles of the herpes simplex virus type 1 BgOL and BgKL variants in Japan suggest dispersion and replacement

Journal of Clinical Microbiology

Volumn 45, Issue 3, 2007, Pages 771-782

  Eda, Hiroyuki ^a,b,c,e   Ozawa, Shigeru ^d   Yoshino, Kamesaburo ^d   Yanagi, Kazuo ^a,b  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

^d Yamanashi Institute of Health   (Japan)

^e PFIZER INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HERPES SIMPLEX VIRUS 1; JAPAN; LATENT VIRUS INFECTION; MARKER GENE; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOUTHERN BLOTTING; VIRUS ISOLATION; VIRUS REACTIVATION; VIRUS TRANSMISSION;

BACTERIAL PROTEINS; BASE SEQUENCE; BLOTTING, SOUTHERN; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, VIRAL; HERPES SIMPLEX; HERPESVIRUS 1, HUMAN; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PREVALENCE; VARIATION (GENETICS);

HUMAN HERPESVIRUS 1;

EID: 33947268169     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01236-06     Document Type: Article

References (50)

1. Bergstrom, T., K. Alestig, B. Svennerholm, P. Horal, B. Skoldenberg, and A. Vahlne. 1990. Neurovirulence of herpes simplex virus types 1 and 2 isolates in diseases of the central nervous system. Eur. J. Clin. Microbiol. Infect. Dis. 9:751-757.
2. Black, F. L. 1975. Infectious diseases in primitive societies. Science 187:515-518.
3. Buchman, T. G., B. Roizman, G. Adams, and B. H. Stover. 1978. Restriction endonuclease fingerprinting of herpes simplex virus DNA: a novel epidemiological tool applied to a nosocomial outbreak. J. Infect. Dis. 138:488-498.
4. Chou, S. 1992. Comparative analysis of sequence variation in gp116 and gp55 components of glycoprotein B of human cytomegalovirus. Virology 188:388-390.
5. Clark, D. A. 2000. Human herpesvirus 6. Rev. Med. Virol. 10:155-173.
6. Clements, J. B., R. J. Watson, and N. M. Wilkie. 1977. Temporal regulation of herpes simplex virus type 1 transcription: location of transcripts on the viral genome. Cell 12:275-285.
7. Dix, R. D., R. R. McKendall, and J. R. Baringer. 1983. Comparative neurovirulence of herpes simplex virus type 1 strains after peripheral or intracerebral inoculation of BALB/c mice. Infect. Immun. 40:103-112.
8. Franti, M., J. T. Aubin, L. Poirel, A. Gautheret-Dejean, D. Candotti, J. M. Huraux, and H. Agut. 1998. Definition and distribution analysis of glycoprotein B gene alleles of human herpesvirus 7. J. Virol. 72:8725-8730.
9. Hammer, M. F., T. M. Karafet, H. Park, K. Omoto, S. Harihara, M. Stoneking, and S. Horai. 2006. Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J. Hum. Genet. 51:47-58.
10. Harada, S., Y. Kamata, Y. Ishii, H. Eda, R. Kitamura, M. Obayashi, S. Ito, F. Ban, J. Kuranari, H. Nakajima, T. Kuze, M. Hayashi, N. Okabe, H. Senpuku, N. Miyasaka, Y. Nakamura, H. Kanegane, and K. Yanagi. 2004. Maintenance of serum immunoglobulin G antibodies to Epstein-Barr virus (EBV) nuclear antigen 2 in healthy individuals from different age groups in a Japanese population with a high childhood incidence of asymptomatic primary EBV infection. Clin. Diagn. Lab. Immunol. 11:123-130.
11. Hayward, G. S., N. Frenkel, and B. Roizman. 1975. Anatomy of herpes simplex virus DNA: strain differences and heterogeneity in the locations of restriction endonuclease cleavage sites. Proc. Natl. Acad. Sci. USA 72:1768-1772.
12. Hayward, G. S., R. J. Jacob, S. C. Wadsworth, and B. Roizman. 1975. Anatomy of herpes simplex virus DNA: evidence for four populations of molecules that differ in the relative orientations of their long and short components. Proc. Natl. Acad. Sci. USA 72:4243-4247.
13. Hondo, R. 1974. A seroepidemiological study of herpes simplex virus. Jpn. J. Med. Sci. Biol. 27:205-213.
14. Iizuka, M., and T. Nakahashi. 2002. A population genetic study on the transition from Jomon people to Yayoi people. Genes Genet. Syst. 77:287-300.
15. Inoue, N., H. Kikuta, and K. Yanagi. 1992. Comparative sequence analyses of Epstein-Barr virus nuclear antigen-2 and -3B genes of a fresh Epstein-Barr virus-2 isolate. Intervirology 33:180-186.
16. Jacob, R. J., L. S. Morse, and B. Roizman. 1979. Anatomy of herpes simplex virus DNA. XII. Accumulation of head-to-tail concatemers in nuclei of infected cells and their role in the generation of the four isomeric arrangements of viral DNA. J. Virol. 29:448-457.
17. Locker, H., and N. Frenkel. 1979. BamI, KpnI, and SaII restriction enzyme maps of the DNAs of herpes simplex virus strains Justin and F: occurrence of heterogeneities in defined regions of the viral DNA. J. Virol. 32:429-441.
18. McDougall, I., F. H. Brown, and J. G. Fleagle. 2005. Stratigraphic placement and age of modern humans from Kibish, Ethiopia. Nature 433:733-736.
19. McGeoch, D. J., S. Cook, A. Dolan, F. E. Jamieson, and E. A. Telford. 1995. Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses. J. Mol. Biol. 247:443-458.
20. McGeoch, D. J., M. A. Dalrymple, A. J. Davison, A. Dolan, M. C. Frame, D. McNab, E. J. Perry, J. E. Scott, and P. Taylor. 1988. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69(Pt. 7):1531-1574.
21. McGeoch, D. J., A. Dolan, S. Donald, and D. H. Brauer. 1986. Complete DNA sequence of the short repeat region in the genome of herpes simplex virus type 1. Nucleic Acids Res. 14:1727-1745.
22. Meng, Y. X., T. J. Spira, G. J. Bhat, C. J. Birch, J. D. Druce, B. R. Edlin, R. Edwards, C. Gunthel, R. Newton, F. R. Stamey, C. Wood, and P. E. Pellett. 1999. Individuals from North America, Australasia, and Africa are infected with four different genotypes of human herpesvirus 8. Virology 261:106-119.
23. Muir, W. B., R. Nichols, and J. Breuer. 2002. Phylogenetic analysis of varicella-zoster virus: evidence of intercontinental spread of genotypes and recombination. J. Virol. 76:1971-1979.
24. Nei, M. 1982. Evolution of human races at the gene level. Prog. Clin. Biol. Res. 103(Pt. A):167-181.
25. Norberg, P., T. Bergstrom, E. Rekabdar, M. Lindh, and J. A. Liljeqvist. 2004. Phylogenetic analysis of clinical herpes simplex virus type 1 isolates identified three genetic groups and recombinant viruses. J. Virol. 78:10755-10764.
26. Omoto, K., and N. Saitou. 1997. Genetic origins of the Japanese: a partial support for the dual structure hypothesis. Am. J. Phys. Anthropol. 102:437-446.
27. Ozawa, S., H. Eda, K. Hayashi, K. Yoshino, and K. Yanagi. 2006. Geographical distribution of the herpes simplex virus type 1 BgKL variant in Japan suggests gradual dispersion of the virus from Shikoku Island to the other islands. J. Clin. Microbiol. 44:2109-2118.
28. Ozawa, S., M. Kaneko, K. Yoshino, S. Harada, and K. Yanagi. 1988. Molecular epidemiology of herpes simplex virus and geographic localization of avariant of herpes simplex virus type 1. Kansenshogaku Zasshi. 62:590-597. (In Japanese.)
29. Ozawa, S., K. Yoshino, H. Eda, and K. Yanagi. 1989. Localization of a variant of herpes simplex virus type 1 in the western Japan. Kansenshogaku Zasshi. 63:39-43. (In Japanese.)
30. Preston, V. G., A. J. Davison, H. S. Marsden, M. C. Timbury, J. H. Subak-Sharpe, and N. M. Wilkie. 1978. Recombinants between herpes simplex virus types 1 and 2: analyses of genome structures and expression of immediate-early polypeptides. J. Virol. 28:499-517.
31. Rekabdar, E., P. Tunback, J. A. Liljeqvist, M. Lindh, and T. Bergstrom. 2002. Dichotomy of glycoprotein g gene in herpes simplex virus type 1 isolates. J. Clin. Microbiol. 40:3245-3251.
32. Richards, J. T., E. R. Kern, J. C. Overall, Jr., and L. A. Glasgow. 1981. Differences in neurovirulence among isolates of Herpes simplex virus types 1 and 2 in mice using four routes of infection. J. Infect. Dis. 1 144:464-471.
33. Roizman, B. 1979. The structure and isomerization of herpes simplex virus genomes. Cell 16:481-494.
34. Roizman, B., and D. M. Knipe. 2001. Herpes simplex viruses and their replication, p. 2399-2459. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 4th ed. Lippincott/The Williams & Wilkins Co., Philadelphia, PA.
35. Roizman, B., and M. Tognon. 1983. Restriction endonuclease patterns of herpes simplex virus DNA: application to diagnosis and molecular epidemiology. Curr. Top. Microbiol. Immunol. 104:273-286.
36. Roizman, B., and M. Tognon. 1982. Restriction enzyme analysis of herpes-virus DNA: stability of restriction endonuclease patterns. Lancet i:677.
37. Sakaoka, H., T. Aomori, O. Honda, Y. Saheki, S. Ishida, S. Yamanishi, and K. Fujinaga. 1985. Subtypes of herpes simplex virus type 1 in Japan: classification by restriction endonucleases and analysis of distribution. J. Infect. Dis. 152:190-197.
38. Sakaoka, H., K. Kurita, Y. Iida, S. Takada, K. Umene, Y. T. Kim, C. S. Ren, and A. J. Nahmias. 1994. Quantitative analysis of genomic polymorphism of herpes simplex virus type 1 strains from six countries: studies of molecular evolution and molecular epidemiology of the virus. J. Gen. Virol. 75(Pt. 3):513-527.
39. Sakaoka, H., H. Saito, K. Sekine, T. Aomori, L. Grillner, G. Wadell, and K. Fujinaga. 1987. Genomic comparison of herpes simplex virus type 1 isolates from Japan, Sweden, and Kenya. J. Gen. Virol. 68(Pt. 3):749-764.
40. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Synthesis of uniformly labeled double-stranded DNA probes, p. 10.6-10.12. In J. Sambrook, E. F. Fritsch, and T. Maniantis (ed.), Molecular cloning, vol. 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
41. Sample, J., L. Young, B. Martin, T. Chatman, E. Kieff, A. Rickinson, and E. Kieff. 1990. Epstein-Barr virus types 1 and 2 differ in their EBNA-3A, EBNA-3B, and EBNA-3C genes. J. Virol. 64:4084-4092.
42. Schmidt, O. W., K. H. Fife, and L. Corey. 1984. Reinfection is an uncommon occurrence in patients with symptomatic recurrent genital herpes. J. Infect. Dis. 149:645-646.
43. Stanberry, L. R., D. M. Torgensen, and A. J. Nahmias. 1997. Herpes simplex viruses 1 and 2, p. 419-454. In K. R. Evans (ed.), Viral infections of humans-epidemiology and control. Plenum Medical Book Company, New York, NY.
44. Stevenson, J., W. Hymas, and D. Hillyard. 2005. Effect of sequence polymorphisms on performance of two real-time PCR assays for detection of herpes simplex virus. J. Clin. Microbiol. 43:2391-2398.
45. Tada, A., N. Sekine, M. Toba, and K. Yoshino. 1977. An analysis of factors influencing the isolation rate of herpes simplex virus. Microbiol. lmmunol. 21:219-229.
46. Vincze, T., J. Posfai, and R. J. Roberts. 2003. NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res. 31:3688-3691.
47. Whitley, R. J. 2001. Herpes simplex virus, p. 2461-2509. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 4th ed. Lippincott-Raven Publishers, Philadelphia, PA.
48. Yoshino, K., S. Taniguchi, and R. Furuse. 1962. A serological survey for antibodies against herpes simplex virus with special reference to comparatively heat-labile complement-fixing antibodies. Jpn. J. M. Soc. Biol. 15:235-247.
49. Yoshino, K., K. Yanagi, and K. Abe. 1982. Efficacy of intradermal administration of herpes simplex virus subunit vaccine. Microbiol. Immunol. 26:753-757.
50. Zong, J., D. M. Ciufo, R. Viscidi, L. Alagiozoglou, S. Tyring, P. Rady, J. Orenstein, W. Boto, H. Kalumbuja, N. Romano, M. Melbye, G. H. Kang, C. Boshoff, and G. S. Hayward. 2002. Genotypic analysis at multiple loci across Kaposi's sarcoma herpesvirus (KSHV) DNA molecules: clustering patterns, novel variants and chimerism. J. Clin. Virol. 23:119-148.