Comparison of culturable Gram-negative bacterial community structures in the rhizosphere of three fruit plants

Biologia

Volumn 61, Issue 6, 2006, Pages 663-670

  Harichová, Jana ^a   Karelová, Edita ^a   Chovanová, Katarína ^a   Stojnev, Tatjana ^a   Prokšová, Miloslava ^b   Brindza, Jan ^c   Brindza, Peter ^c   Tóth, Dezider ^c   Pangallo, Domenico ^a   Ferianc, Peter ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

^b WATER RESEARCH INSTITUTE   (Slovakia)

^c SLOVAK UNIVERSITY OF AGRICULTURE IN NITRA   (Slovakia)

Author keywords

Bacterial diversity; Cultivation dependent approach; Fruit plants; Gram negative bacteria; Root borne bacterial community

Indexed keywords

ACINETOBACTER; BACTERIA (MICROORGANISMS); BACTEROIDETES; CASTANEA SATIVA; CORNUS; CORNUS MAS; ENTEROBACTER; GAMMAPROTEOBACTERIA; NEGIBACTERIA; PANTOEA; PSEUDOMONAS; SORBUS; SORBUS DOMESTICA;

EID: 33947247676     PISSN: 00063088     EISSN: 13369563     Source Type: Journal    
DOI: 10.2478/s11756-006-0138-1     Document Type: Article

References (30)

1. BOWEN, G.D. & ROVIRA, A.D. 1991. The rhizosphere, the hidden half, pp. 641-649. In: WAISEL, Y, ESHEL, A. & KAFKAFI, U. (eds) Plant Roots - The Hidden Half, Marcel Dekker Inc., New York.
2. COOK, R.J., THOMASHOW, L.S., WELLER, D.M., FUJIMOTO, D., MAZZOLA, M., BANGERA, G. & KIM, D.S. 1995. Molecular mechanisms of defense by rhizobacteria against root disease. Proc. Natl. Acad. Sci. USA 92: 4197-4201.
3. DUINEVELD, B.M., KOWALCHUK, G.A., KEIJZER, A., VAN ELSAS, J.D. & VAN VEEN, J.A. 2001. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl. Environ. Microbiol. 67: 172-178.
4. ELLIS, R.J., MORGAN, P., WIEGHTMAN, A.J. & FRY, J.C. 2003. Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl. Environ. Microbiol. 69: 3223-3230.
5. GRIFFITHS, B.S., RITZ, K., EBBLEWHITE, N. & DOBSON, G. 1999. Soil microbial community structure: effects of substrate loading rates. Soil Biol. Biochem. 31: 145-153.
6. HESSENMUBLLER, A. & ZELLER, W. 1996. Biological control of soil-borne Phytophthora species on strawberry with bacterial antagonists: 1. Antagonistic effect of colonization of rhizoplane. Z. Pflanzenkrankh. Pflanzenschutz 103: 602-609.
7. HOLMES, B., PINNING, C. A. & DAVSON, C.A. 1986. A probability matrix for the identification of gramnegative, aerobic, non-fermentative bacteria that grow on nutrient agar. J. Gen. Microbiol. 132: 1827-1842.
8. JUHÁSOVÁ, G. 1999. Hubové choroby gaštana obyčajného (Castanea sativa Mill). [Fungal diseaes of chestnut (Castanea sativa Mill).] Veda, Bratislava, 189 pp.
9. JUHÁSOVÁ, G. & HRUBÍK, P. 1984. Choroby a škodcovia cudzokrajných drevín na Slovensku. [The diseases and evil-doers of foreign woods in Slovakia.] Acta Dendrobiologica, Veda, Bratislava, 164 pp.
10. KOPŘIVNÍK, B. & VYCHODILOVÁ, M. 1975. Kultivace a identifikace mixobakterií. Acta HEM, 4: 17-20. (Cultivation and identification of myxobacteria)
11. LILJEROTH, E., BURGERS, S.L.G.E. & VAN VEEN, J.A. 1991. Changes in bacterial populations along roots of wheat seedlings. Biol. Fertil. Soils 10: 276-280.
12. LANDA, B.B., MAVRODI, O.V., RAAIJMAKERS, J.M., MCSPADDEN GARDENER, B.B., THOMASHOW, L.S. & WELLER, D.M. 2002. Differential ability of genotypes of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants. Appl. Environ. Microbiol. 68: 3226-3237.
13. LYNCH, J.M. & WHIPPS, J.M. 1990. Substrate flow in the rhizosphere. Plant Soil 129: 1-10.
14. MITSUI, H., GORLACH, K., LEE, H. J., HATTORI, R. & HATTORI, T. 1997. Incubation time and media requirements of culturable bacteria from different phylogenetic groups. J. Microbiol. Methods 30: 103-110.
15. MOHAN, N. & MAHADEVAN, A. 2003. Effect of phenol on ultra structure and plasmid DNA of Xanthomonas oryzae pv. oryzae. Indian. J. Exp. Biol.41: 78-81.
16. NASEBY, D.C. & LYNCH, J.M. 1999. Effects of Pseudomonas fluorescens F113 on ecological functions in the pea rhizosphere are dependent on pH. Microb. Ecol. 37: 248-256.
17. NASEBY, D.C. & LYNCH, J.M. 2001. Effect of 2,4-diacetylphloroglucinol producing, overproducing, and nonproducing Pseudomonas fluorescens F113 in the rhizosphere of pea. Microb. Ecol. 42: 193-200.
18. NEAL, J.R., Jr., ATKINSON, T.G. & LARSON, R.I. 1970. Changes in the rhizosphere microflora of spring wheat induced by disomic substitution of a chromosome. Can. J. Microbiol. 16: 153-158.
19. NEAL, J.R., Jr., LARSON, R.I. & ATKINSON, T.G. 1973. Changes in rhizosphere populations of selected physiological groups of bacteria related to substitution of specific pairs of chromosomes in spring wheat. Plant Soil 39: 209-212.
20. OVREÅS, L. & TORSVIK, V. 1998. Microbial diversity and community structure in two different agricultural soil communities. Microb. Ecol. 36: 303-315.
21. PENALOZA-VAZQUEZ, A., FAKHR, M.K., BAILEY, A.M. & BENDER, C.L. 2004. AlgR functions in algC expression and virulence in Pseudomonas syringae pv. syringae. Microbiology 150: 2727-2737.
22. RAAIJMAKERS, J.M. & WELLER, D.M. 2001. Exploiting genotypic diversity of 2,4-diacetylphloroglucinol-producing Pseudomonas spp.: characterization of superior root-colonizing P. fluorescens strain Q8r1-96. Appl. Environ. Microbiol. 67: 2545-2554.
23. SANFORD, G.B. 1946. Soil-borne diseases in relation to the microflora associated with various crops and soil amendments. Soil Sci. 61: 9-22.
24. SLIWINSKI, B.J., KREUZER, M., WETTSTEIN, H.R. & MACHMULLER, A. 2002. Rumen fermentation and nitrogen balance of lambs fed diets containing plant extracts rich in tannins and saponins, and associated emissions of nitrogen and methane. Arch. Tierernahr. 56: 379-392.
25. SORBO, B.S., GIORDANO, S., RICCIARDI, L., FERRARA, S., MONTESANO, D., CASTALDO COBIANCHI, R., VUOTTO, M.L. & FERRARA, L. 2000. Antibacterial and allelopathic activity of extract from Castanea sativa leaves. Fitoterapia 71: S110-S116.
26. SWINNEN, J., VAN VEEN, J.A. & MERCK, R. 1994. 14-C pulse labeling of field-grown spring wheat: an evaluation of its use in rhizosphere carbon budget estimations. Soil Biol. Biochem. 26: 161-170.
27. TOYOTA, K., YAMAMOTO, K. & KIMURA, M. 1994. Isolation and characterization of bacteria responsible for the suppression of Fusarium oxysporum f. sp. raphani on the host rhizoplane. Soil Sci. Plant Nutr. 40: 381-390.
28. VIDAVER, A.K. 2002. Uses of antimicrobials in plant agriculture. Clin. Infect. Dis.34 (Suppl 3): S107-110.
29. WEINDLING, R. 1946. Microbial antagonism and disease control. Soil Sci. 61: 23-30.
30. YANG, C.H., CROWLEY, D.E., BORNEMAN, J. & KEEN, N.T. 2001. Microbial phyllosphere populations are more complex than previously realized. Proc. Natl. Acad. Sci. USA 98: 3889-3894.