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Volumn 4, Issue 4, 2006, Pages 203-211

Comparative Analysis of Eubacterial DNA Polymerase III Alpha Subunits

Author keywords

DNA polymerase III alpha subunit; dnaE; polC

Indexed keywords

BACTERIAL ENZYME; DNA DIRECTED DNA POLYMERASE GAMMA; HETERODIMER; HOMODIMER;

EID: 33947177875     PISSN: 16720229     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-0229(07)60001-1     Document Type: Article
Times cited : (26)

References (35)
  • 1
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA poly-merases in prokaryotes and eukaryotes
    • Goodman M.F. Error-prone repair DNA poly-merases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71 (2002) 17-50
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 17-50
    • Goodman, M.F.1
  • 2
    • 10644272391 scopus 로고    scopus 로고
    • Oxford University Press, Oxford, UK
    • Lewin B. Genes VIII (2004), Oxford University Press, Oxford, UK
    • (2004) Genes VIII
    • Lewin, B.1
  • 3
    • 0041816481 scopus 로고
    • Discovery of DNA polymerase
    • Lehman I.R. Discovery of DNA polymerase. J. Biol. Chem. 278 (1989) 34733-34738
    • (1989) J. Biol. Chem. , vol.278 , pp. 34733-34738
    • Lehman, I.R.1
  • 4
    • 0033529763 scopus 로고    scopus 로고
    • 2C is an error-prone DNA polymerase, Escherichia coli pol V
    • 2C is an error-prone DNA polymerase, Escherichia coli pol V. Proc. Natl. Acad. Sci. USA 96 (1999) 8919-8924
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8919-8924
    • Tang, M.1
  • 5
    • 0037072865 scopus 로고    scopus 로고
    • Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment
    • Kobayashi S., et al. Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment. J. Biol. Chem. 277 (2002) 34198-34207
    • (2002) J. Biol. Chem. , vol.277 , pp. 34198-34207
    • Kobayashi, S.1
  • 6
    • 0035906661 scopus 로고    scopus 로고
    • Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection
    • Patel P.H., et al. Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection. J. Mol. Biol. 308 (2001) 823-837
    • (2001) J. Mol. Biol. , vol.308 , pp. 823-837
    • Patel, P.H.1
  • 7
    • 0018786252 scopus 로고
    • DNA polymerase III of Escherichia coli. Purification and identification of subunits
    • McHenry C.S., and Crow W. DNA polymerase III of Escherichia coli. Purification and identification of subunits. J. Biol. Chem. 254 (1979) 1748-1753
    • (1979) J. Biol. Chem. , vol.254 , pp. 1748-1753
    • McHenry, C.S.1    Crow, W.2
  • 8
    • 0029026635 scopus 로고
    • DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine
    • Kelman Z., and O'Donnell M. DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine. Annu. Rev. Biochem. 64 (1995) 171-200
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 171-200
    • Kelman, Z.1    O'Donnell, M.2
  • 9
    • 0030034288 scopus 로고    scopus 로고
    • DNA poly-merase III: running rings around the fork
    • Herendeen D.R., and Kelly T.J. DNA poly-merase III: running rings around the fork. Cell 84 (1996) 5-8
    • (1996) Cell , vol.84 , pp. 5-8
    • Herendeen, D.R.1    Kelly, T.J.2
  • 10
    • 0017661780 scopus 로고
    • DNA poly-merase III holoenzyme of Escherichia coli. Purification and resolution into subunits
    • McHenry C., and Kornberg A. DNA poly-merase III holoenzyme of Escherichia coli. Purification and resolution into subunits. J. Biol. Chem. 252 (1977) 6478-6484
    • (1977) J. Biol. Chem. , vol.252 , pp. 6478-6484
    • McHenry, C.1    Kornberg, A.2
  • 11
    • 0010219240 scopus 로고
    • A separate editing exonuclease for DNA replication: the ep-silon subunit of Escherichia coli DNA polymerase III holoenzyme
    • Scheuermann R.H., and Echols H. A separate editing exonuclease for DNA replication: the ep-silon subunit of Escherichia coli DNA polymerase III holoenzyme. Proc. Natl. Acad. Sci. USA 81 (1984) 7747-7751
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 7747-7751
    • Scheuermann, R.H.1    Echols, H.2
  • 12
    • 0022344806 scopus 로고
    • The polymerase subunit of DNA polymerase III of Escherichia coli. I. Amplification of the dnaE gene product and polymerase activity of the alpha subunit
    • Maki H., et al. The polymerase subunit of DNA polymerase III of Escherichia coli. I. Amplification of the dnaE gene product and polymerase activity of the alpha subunit. J. Biol. Chem. 260 (1985) 12982-12986
    • (1985) J. Biol. Chem. , vol.260 , pp. 12982-12986
    • Maki, H.1
  • 13
    • 0022345854 scopus 로고
    • The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the alpha subunit, devoid of nuclease activities
    • Maki H., and Kornberg A. The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the alpha subunit, devoid of nuclease activities. J. Biol. Chem. 260 (1985) 12987-12992
    • (1985) J. Biol. Chem. , vol.260 , pp. 12987-12992
    • Maki, H.1    Kornberg, A.2
  • 14
    • 0023369230 scopus 로고
    • Proofreading by DNA polymerase III of Escherichia coli depends on cooperative interaction of the polymerase and exonu-clease subunits
    • Maki H., and Kornberg A. Proofreading by DNA polymerase III of Escherichia coli depends on cooperative interaction of the polymerase and exonu-clease subunits. Proc. Natl. Acad. Sci. USA 84 (1987) 4389-4392
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4389-4392
    • Maki, H.1    Kornberg, A.2
  • 15
    • 0023897674 scopus 로고
    • DNA polymerase III holoen-zyme of Escherichia coli. IV. The holoenzyme is an asymmetric dimer with twin active sites
    • Maki H., et al. DNA polymerase III holoen-zyme of Escherichia coli. IV. The holoenzyme is an asymmetric dimer with twin active sites. J. Biol. Chem. 263 (1988) 6570-6578
    • (1988) J. Biol. Chem. , vol.263 , pp. 6570-6578
    • Maki, H.1
  • 16
    • 0025809742 scopus 로고
    • Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme
    • Stukenberg P.T., et al. Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 266 (1991) 11328-11334
    • (1991) J. Biol. Chem. , vol.266 , pp. 11328-11334
    • Stukenberg, P.T.1
  • 17
    • 0029053989 scopus 로고
    • Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle
    • Onrust R., et al. Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. J. Biol. Chem. 270 (1995) 13366-13377
    • (1995) J. Biol. Chem. , vol.270 , pp. 13366-13377
    • Onrust, R.1
  • 18
    • 0035213509 scopus 로고    scopus 로고
    • Genetic identification of two distinct DNA polymerases, DnaE and PolC, that are essential for chromosomal DNA replication in Staphy-lococcus aureus
    • Inoue R., et al. Genetic identification of two distinct DNA polymerases, DnaE and PolC, that are essential for chromosomal DNA replication in Staphy-lococcus aureus. Mol. Genet. Genomics. 266 (2001) 564-571
    • (2001) Mol. Genet. Genomics. , vol.266 , pp. 564-571
    • Inoue, R.1
  • 19
    • 0036299659 scopus 로고    scopus 로고
    • DNA polymerases of low-GC gram-positive eubacteria: identification of the replication-specific enzyme encoded by dnaE
    • Barnes M.H., et al. DNA polymerases of low-GC gram-positive eubacteria: identification of the replication-specific enzyme encoded by dnaE. J. Bacteriol 184 (2002) 3834-3838
    • (2002) J. Bacteriol , vol.184 , pp. 3834-3838
    • Barnes, M.H.1
  • 20
    • 0035941008 scopus 로고    scopus 로고
    • Two essential DNA poly-merases at the bacterial replication fork
    • Dervyn E., et al. Two essential DNA poly-merases at the bacterial replication fork. Science 294 (2001) 1716-1719
    • (2001) Science , vol.294 , pp. 1716-1719
    • Dervyn, E.1
  • 21
    • 0034666303 scopus 로고    scopus 로고
    • The DNA replication machine of a gram-positive organism
    • Bruck I., and O'Donnell M. The DNA replication machine of a gram-positive organism. J. Biol. Chem. 275 (2000) 28971-28983
    • (2000) J. Biol. Chem. , vol.275 , pp. 28971-28983
    • Bruck, I.1    O'Donnell, M.2
  • 22
    • 0242666381 scopus 로고    scopus 로고
    • The essential C family DnaE polymerase is error-prone and efficient at lesion bypass
    • Bruck I., et al. The essential C family DnaE polymerase is error-prone and efficient at lesion bypass. J. Biol. Chem. 278 (2003) 44361-44368
    • (2003) J. Biol. Chem. , vol.278 , pp. 44361-44368
    • Bruck, I.1
  • 23
    • 0032483013 scopus 로고    scopus 로고
    • Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803
    • Wu H., et al. Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803. Proc. Natl. Acad. Sci. USA 95 (1998) 9226-9231
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9226-9231
    • Wu, H.1
  • 24
    • 0033041584 scopus 로고    scopus 로고
    • DNA polymerase C of the thermophilic bacterium Thermus aquaticus: classification and phylogenetic analysis of the family C DNA polymerases
    • Huang Y.P., and Ito J. DNA polymerase C of the thermophilic bacterium Thermus aquaticus: classification and phylogenetic analysis of the family C DNA polymerases. J. Mol. Evol. 48 (1999) 756-769
    • (1999) J. Mol. Evol. , vol.48 , pp. 756-769
    • Huang, Y.P.1    Ito, J.2
  • 25
    • 19444386290 scopus 로고    scopus 로고
    • An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus
    • Galhardo R.S., et al. An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus. Nucleic Acids Res. 33 (2005) 2603-2614
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2603-2614
    • Galhardo, R.S.1
  • 26
    • 0037453719 scopus 로고    scopus 로고
    • DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis
    • Boshoff H.I., et al. DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis. Cell 113 (2003) 183-193
    • (2003) Cell , vol.113 , pp. 183-193
    • Boshoff, H.I.1
  • 27
    • 0029913902 scopus 로고    scopus 로고
    • Ancient duplication of DNA polymerase inferred from analysis of complete bacterial genomes
    • Koonin E.V., and Bork P. Ancient duplication of DNA polymerase inferred from analysis of complete bacterial genomes. Trends Biochem. Sci. 21 (1996) 128-129
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 128-129
    • Koonin, E.V.1    Bork, P.2
  • 28
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29 (2001) 37-40
    • (2001) Nucleic Acids Res. , vol.29 , pp. 37-40
    • Apweiler, R.1
  • 29
    • 0004238344 scopus 로고    scopus 로고
    • Oxford University Press, Oxford, UK
    • Lewin B. Genes VII (2000), Oxford University Press, Oxford, UK
    • (2000) Genes VII
    • Lewin, B.1
  • 30
    • 0029962489 scopus 로고    scopus 로고
    • ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool
    • Grundy W.N., et al. ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput. Appl. Biosci. 12 (1996) 303-310
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 303-310
    • Grundy, W.N.1
  • 31
    • 0030853763 scopus 로고    scopus 로고
    • Meta-MEME: motif-based hidden Markov models of protein families
    • Grundy W.N., et al. Meta-MEME: motif-based hidden Markov models of protein families. Comput. Appl. Biosci. 13 (1997) 397-406
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 397-406
    • Grundy, W.N.1
  • 32
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence J.G., and Ochman H. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA 95 (1998) 9413-9417
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 33
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 12 (2002) 656-664
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 34
    • 2442659026 scopus 로고    scopus 로고
    • Multiple sequence alignment in parallel on a workstation cluster
    • Ebedes J., and Datta A. Multiple sequence alignment in parallel on a workstation cluster. Bioin-formatics 20 (2004) 1193-1195
    • (2004) Bioin-formatics , vol.20 , pp. 1193-1195
    • Ebedes, J.1    Datta, A.2
  • 35
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., et al. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
    • (2004) Brief. Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.