Wavelet-based multi-resolution statistics for optical imaging signals: Application to automated detection of odour activated glomeruli in the mouse olfactory bulb

NeuroImage

Volumn 34, Issue 3, 2007, Pages 1020-1035

  Bathellier, Brice ^a   Van De Ville, Dimitri ^a   Blu, Thierry ^a   Unser, Michael ^a   Carleton, Alan ^a  

^a EPFL   (Switzerland)

Author keywords

Glomeruli; Intrinsic imaging; Olfaction; SynaptopHfluorin; Wavelet transform

Indexed keywords

PROTEIN; PROTEIN SYNAPTOPHFLUORIN; UNCLASSIFIED DRUG;

ACCURACY; ANIMAL EXPERIMENT; ARTICLE; AUTOMATION; BRAIN MAPPING; BRAIN REGION; CONTROLLED STUDY; DATA ANALYSIS; GENETIC ENGINEERING; IMAGE ANALYSIS; IMAGING SYSTEM; IN VIVO STUDY; INTERMETHOD COMPARISON; METHODOLOGY; MOUSE; NERVE CELL NETWORK; NOISE REDUCTION; NON INVASIVE PROCEDURE; NONHUMAN; ODOR; OLFACTORY BULB; OLFACTORY BULB GLUMERULI; OPTICAL IMAGING; OPTICAL INSTRUMENTATION; OPTICAL RESOLUTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; STATISTICAL ANALYSIS; STATISTICAL MODEL; STATISTICAL SIGNIFICANCE; TECHNIQUE;

ALGORITHMS; ANIMALS; BRAIN MAPPING; DATA INTERPRETATION, STATISTICAL; EVOKED POTENTIALS, SOMATOSENSORY; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICE; MICE, INBRED C57BL; MICROSCOPY, FLUORESCENCE; ODORS; OLFACTORY BULB; OLFACTORY RECEPTOR NEURONS; PHOTIC STIMULATION; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SMELL;

EID: 33947158273     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.10.038     Document Type: Article

References (36)

1. Abraham N.M., Spors H., Carleton A., Margrie T.W., Kuner T., and Schaefer A.T. Maintaining accuracy at the expense of speed; stimulus similarity defines odor discrimination time in mice. Neuron 44 (2004) 865-876
2. Belluscio L., and Katz L.C. Symmetry, stereotypy, and topography of odorant representations in mouse olfactory bulbs. J. Neurosci. 21 (2001) 2113-2122
3. Bonhoeffer T., and Grinvald A. Iso-orientation domains in cat visual cortex are arranged in pinwheel-like patterns. Nature 353 (1991) 429-431
4. Bozza T., McGann J.P., Mombaerts P., and Wachowiak M. In vivo imaging of neuronal activity by targeted expression of a genetically encoded probe in the mouse. Neuron 42 (2004) 9-21
5. Breakspear M., Bullmore E.T., Aquino K., Das P., and Williams L.M. The multiscale character of evoked cortical activity. NeuroImage 30 (2006) 1230-1242
6. Bullmore E., Fadili J., Breakspear M., Salvador R., Suckling J., and Brammer M. Wavelets and statistical analysis of functional magnetic resonance images of the human brain. Stat. Methods Med. Res. 12 (2003) 375-399
7. Djurisic M., Antic S., Chen W.R., and Zecevic D. Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. J. Neurosci. 24 (2004) 6703-6714
8. Fadili M.J., and Bullmore E.T. A comparative evaluation of wavelet-based methods for hypothesis testing of brain activation maps. NeuroImage 23 (2004) 1112-1128
9. Friston K.J., Fletcher P., Josephs O., Holmes A., Rugg M.D., and Turner R. Event-related fMRI: characterizing differential responses. NeuroImage 7 (1998) 30-40
10. Frostig R.D., Lieke E.E., Ts'o D.Y., and Grinvald A. Cortical functional architecture and local coupling between neuronal activity and the microcirculation revealed by in vivo high-resolution optical imaging of intrinsic signals. Proc. Natl. Acad. Sci. U. S. A. 87 (1990) 6082-6086
11. Grinvald A., and Hildesheim R. VSDI: a new era in functional imaging of cortical dynamics. Nat. Rev., Neurosci. 5 (2004) 874-885
12. Grinvald A., Lieke E., Frostig R.D., Gilbert C.D., and Wiesel T.N. Functional architecture of cortex revealed by optical imaging of intrinsic signals. Nature 324 (1986) 361-364
13. Grinvald A., Shoham D., Shmuel A., Glaser D.E., Vanzetta I., Shtoyerman E., Slovin H., Wijnbergen C., Hildesheim R., Sterkin A., and Arieli A. In-vivo optical imaging of cortical architecture and dynamics. In: Windhorst U., and Johansson H. (Eds). Modern Techniques in Neuroscience Research (1999), Springer Verlag 893-969
14. Hasan M.T., Friedrich R.W., Euler T., Larkum M.E., Giese G., Both M., Duebel J., Waters J., Bujard H., Griesbeck O., et al. Functional fluorescent Ca2+ indicator proteins in transgenic mice under TET control. PLoS Biol. 2 (2004) e163
15. Landisman C.E., and Ts'o D.Y. Color processing in macaque striate cortex: relationships to ocular dominance, cytochrome oxidase, and orientation. J. Neurophysiol. 87 (2002) 3126-3137
16. Mallat S. A theory for multiresolution signal decomposition: the wavelet decomposition. IEEE Trans. Pattern. Anal. Mach. Intell. 11 (1989) 674-693
17. Mallat S. A Wavelet Tour of Signal Processing (1999), Academic Press
18. McGann J.P., Pírez N., Gainey G.A., Muratore C., Elias A.S., and Wachowiak M. Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neurons. Neuron 48 (2005) 1039-1053
19. Meister M., and Bonhoeffer T. Tuning and topography in an odor map on the rat olfactory bulb. J. Neurosci. 21 (2001) 1351-1360
20. Miesenbock G., De Angelis D.A., and Rothman J.E. Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins. Nature 394 (1998) 192-195
21. Mombaerts P. Genes and ligands for odorant, vomeronasal and taste receptors. Nat. Rev., Neurosci. 5 (2004) 263-278
22. Rubin B.D., and Katz L.C. Optical imaging of odorant representations in the mammalian olfactory bulb. Neuron 23 (1999) 499-511
23. Ruttimann U.E., Unser M., Rawlings R.R., Rio D., Ramsey N.F., Mattay V.S., Hommer D.W., Frank J.A., and Weinberger D.R. Statistical analysis of functional MRI data in the wavelet domain. IEEE Trans. Med. Imaging 17 (1998) 142-154
24. Schafer J.R., Kida I., Xu F., Rothman D.L., and Hyder F. Reproducibility of odor maps by fMRI in rodents. NeuroImage 31 (2006) 1238-1246
25. Schuett S., Bonhoeffer T., and Hubener M. Mapping retinotopic structure in mouse visual cortex with optical imaging. J. Neurosci. 22 (2002) 6549-6559
26. Spors H., and Grinvald A. Spatio-temporal dynamics of odor representations in the mammalian olfactory bulb. Neuron 34 (2002) 301-315
27. Spors H., Wachowiak M., Cohen L.B., and Friedrich R.W. Temporal dynamics and latency patterns of receptor neuron input to the olfactory bulb. J. Neurosci. 26 (2006) 1247-1259
28. Turkheimer F.E., Brett M., Aston J.A., Leff A.P., Sargent P.A., Wise R.J., Grasby P.M., and Cunningham V.J. Statistical modeling of positron emission tomography images in wavelet space. J. Cereb. Blood Flow Metab. 20 (2000) 1610-1618
29. Uchida N., and Mainen Z.F. Speed and accuracy of olfactory discrimination in the rat. Nat. Neurosci. 6 (2003) 1224-1229
30. Van De Ville D., Blu T., and Unser M. Wavelets versus resels in the context of fMRI: establishing the Link with SPM. Paper presented at: SPIE Conference on Mathematical Imaging: Wavelet Applications in Signal and Image Processing X (San Diego CA, USA) (2003)
31. Van De Ville D., Blu T., and Unser M. Integrated wavelet processing and spatial statistical testing of fMRI data. NeuroImage 23 (2004) 1472-1485
32. Van De Ville D., Blu T., and Unser M. Surfing the brain. IEEE Eng. Med. Biol. Mag. 25 (2006) 65-78
33. Wachowiak M., and Cohen L.B. Representation of odorants by receptor neuron input to the mouse olfactory bulb. Neuron 32 (2001) 723-735
34. Wachowiak M., and Cohen L.B. Correspondence between odorant-evoked patterns of receptor neuron input and intrinsic optical signals in the mouse olfactory bulb. J. Neurophysiol. 89 (2003) 1623-1639
35. Wachowiak M., Denk W., and Friedrich R.W. Functional organization of sensory input to the olfactory bulb glomerulus analyzed by two-photon calcium imaging. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 9097-9102
36. Xu F., Liu N., Kida I., Rothman D.L., Hyder F., and Shepherd G.M. Odor maps of aldehydes and esters revealed by functional MRI in the glomerular layer of the mouse olfactory bulb. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 11029-11034