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Volumn 54, Issue 9, 2006, Pages 3603-3613

Design of probabilistic boolean networks under the requirement of contextual data consistency

Author keywords

Data consistency; Gene regulatory network; Graphical model; Network inference

Indexed keywords

DATA CONSISTENCY; GENE REGULATORY NETWORKS; GRAPHICAL MODELS; NETWORK INFERENCE;

EID: 33947131109     PISSN: 1053587X     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSP.2006.877641     Document Type: Article
Times cited : (15)

References (22)
  • 1
    • 0033737840 scopus 로고    scopus 로고
    • Inferring qualitative relations in genetic networks and metabolic pathways
    • T. Akutsu, S. Miyano, and S. Kuhara, "Inferring qualitative relations in genetic networks and metabolic pathways," Bioinformatics, vol. 16, pp. 727-734, 2000.
    • (2000) Bioinformatics , vol.16 , pp. 727-734
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 2
    • 0034601455 scopus 로고    scopus 로고
    • Molecular classification of cutaneous malignant melanoma by gene expression profiling
    • M. Bittner, "Molecular classification of cutaneous malignant melanoma by gene expression profiling," Nature, vol. 406, pp. 536-540, 2000.
    • (2000) Nature , vol.406 , pp. 536-540
    • Bittner, M.1
  • 3
    • 24344481300 scopus 로고    scopus 로고
    • Steady-state probabilities for attractors in probabilistic Boolean networks
    • M. Brun, E. R. Dougherly, and I. Shmulevich, "Steady-state probabilities for attractors in probabilistic Boolean networks," Signal Process., vol. 85, no. 10, pp. 1993-2013, 2005.
    • (2005) Signal Process , vol.85 , Issue.10 , pp. 1993-2013
    • Brun, M.1    Dougherly, E.R.2    Shmulevich, I.3
  • 4
    • 0036500609 scopus 로고    scopus 로고
    • A genomic regulatory network for development
    • E. Davidson, "A genomic regulatory network for development," Science, vol. 295, pp. 1669-1678, 2002.
    • (2002) Science , vol.295 , pp. 1669-1678
    • Davidson, E.1
  • 6
    • 33344464798 scopus 로고    scopus 로고
    • Epistemology of computational biology: Mathematical models and experimental prediction as the basis of their validity
    • E. R. Dougherty and U. M. Braga-Neto, "Epistemology of computational biology: Mathematical models and experimental prediction as the basis of their validity," Biol. Syst., vol. 14, no. 1, pp. 65-90, 2005.
    • (2005) Biol. Syst , vol.14 , Issue.1 , pp. 65-90
    • Dougherty, E.R.1    Braga-Neto, U.M.2
  • 7
    • 0032809387 scopus 로고    scopus 로고
    • Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery
    • S. Huang, "Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery," Mol. Med., vol. 77, pp. 469-480, 1999.
    • (1999) Mol. Med , vol.77 , pp. 469-480
    • Huang, S.1
  • 9
    • 0034287393 scopus 로고    scopus 로고
    • A general framework for the analysis of multivariate gene interaction via expression arrays
    • S. Kim, E. R. Dougherty, M. L. Bittner, Y. Chen, K. Sivakumar, P. Meltzer, and J. M. Trent, "A general framework for the analysis of multivariate gene interaction via expression arrays," Biomed. Opt., vol. 5, pp. 411-424, 2000.
    • (2000) Biomed. Opt , vol.5 , pp. 411-424
    • Kim, S.1    Dougherty, E.R.2    Bittner, M.L.3    Chen, Y.4    Sivakumar, K.5    Meltzer, P.6    Trent, J.M.7
  • 11
    • 0038047901 scopus 로고    scopus 로고
    • On learning gene regulatory networks under the Boolean network model
    • H. Lahdesmaki, I. Shmulevich, and O. Yli-Haria, "On learning gene regulatory networks under the Boolean network model," Mach. Learn., vol. 52, pp. 147-167, 2003.
    • (2003) Mach. Learn , vol.52 , pp. 147-167
    • Lahdesmaki, H.1    Shmulevich, I.2    Yli-Haria, O.3
  • 12
    • 16344368806 scopus 로고    scopus 로고
    • Intervention in context-sensitive probabilistic Boolean networks
    • R. Pal, A. Datta, M. L. Bittner, and E. R. Dougherty, "Intervention in context-sensitive probabilistic Boolean networks," Bioinformatics, vol. 21, pp. 1211-1218, 2005a.
    • (2005) Bioinformatics , vol.21 , pp. 1211-1218
    • Pal, R.1    Datta, A.2    Bittner, M.L.3    Dougherty, E.R.4
  • 13
    • 17444405987 scopus 로고    scopus 로고
    • Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS
    • R. Pal, A. Datta, A. J. Fomace, M. L. Bittner, and E. R. Dougherty, "Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS," Bioinformatics, vol. 21, pp. 1542-1549, 2005b.
    • (2005) Bioinformatics , vol.21 , pp. 1542-1549
    • Pal, R.1    Datta, A.2    Fomace, A.J.3    Bittner, M.L.4    Dougherty, E.R.5
  • 15
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks
    • I. Shmulevich, E. R. Dougherty, S. Kim, and W. Zhang, "Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks," Bioinformatics, vol. 18, pp. 261-274, 2002a.
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1    Dougherty, E.R.2    Kim, S.3    Zhang, W.4
  • 16
    • 0036772705 scopus 로고    scopus 로고
    • Gene perturbation and intervention in probabilistic Boolean networks
    • I. Shmulevich, E. R. Dougherty, and W. Zhang, "Gene perturbation and intervention in probabilistic Boolean networks," Bioinformatics, vol. 18, pp. 1319-1331, 2002b.
    • (2002) Bioinformatics , vol.18 , pp. 1319-1331
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 17
    • 0035999984 scopus 로고    scopus 로고
    • Binary analysis and optimization-based normalization of gene expression data
    • I. Shmulevich and W. Zhang, "Binary analysis and optimization-based normalization of gene expression data," Bioinformatics, vol. 18, pp. 555-565, 2002c.
    • (2002) Bioinformatics , vol.18 , pp. 555-565
    • Shmulevich, I.1    Zhang, W.2
  • 18
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • C.-H. Yuh, H. Bolouri, and E. H. Davidson, "Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene," Science, vol. 279, pp. 1896-1902, 1998.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.-H.1    Bolouri, H.2    Davidson, E.H.3
  • 21
    • 1542463515 scopus 로고    scopus 로고
    • Binarization of microarray data based on a mixture model
    • X. Zhou, X. Wang, and E. R. Dougherty, "Binarization of microarray data based on a mixture model," Molecul. Cancer Therap., vol. 2, pp. 679-684, 2003.
    • (2003) Molecul. Cancer Therap , vol.2 , pp. 679-684
    • Zhou, X.1    Wang, X.2    Dougherty, E.R.3
  • 22
    • 10244239406 scopus 로고    scopus 로고
    • A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks
    • X. Zhou, X. Wang, R. Pal, I. Ivanov, M. L. Bittner, and E. R. Dougherty, "A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks," Bioinformatics, vol. 20, pp. 2918-2927, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 2918-2927
    • Zhou, X.1    Wang, X.2    Pal, R.3    Ivanov, I.4    Bittner, M.L.5    Dougherty, E.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.