Population structure at the S-locus of Sorbus aucuparia L. (Rosaceae: Maloideae)

Molecular Ecology

Volumn 16, Issue 6, 2007, Pages 1315-1325

  Raspé, Olivier ^a   Kohn, Joshua R ^b  

^a BOTANIC GARDEN MEISE   (Belgium)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Balancing selection; Population structure; Rosaceae; S locus; S RNase; Self incompatibility

Indexed keywords

PRIMER DNA; RIBONUCLEASE; VEGETABLE PROTEIN;

ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; DNA SEQUENCE; FRANCE; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION GENETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SORBUS; STATISTICAL MODEL;

BASE SEQUENCE; DNA PRIMERS; EVOLUTION, MOLECULAR; FRANCE; GENE FREQUENCY; GENETICS, POPULATION; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBONUCLEASES; SEQUENCE ANALYSIS, DNA; SORBUS; VARIATION (GENETICS);

MALOIDEAE; ROSACEAE; SORBUS; SORBUS AUCUPARIA;

EID: 33847686884     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03233.x     Document Type: Article

References (59)

1. Breitenbach-Dorfer M, Pensker W, Hacker R, Müller F (1992) Clone identification and clinal allozyme variation in populations of Abies alba from the Eastern Alps. Plant Systematics and Evolution, 181, 109 120.
2. Broothaerts W (2003) New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles. Theoretical and Applied Genetics, 106, 703 714.
3. Campbell JM, Lawrence MJ (1981) The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. II. The number and frequency of S-alleles in a natural population (R106). Heredity, 46, 81 90.
4. Castric V, Vekemans X (2004) Plant self-incompatibility in natural populations: a critical assessment of recent theoretical and empirical advances. Molecular Ecology, 13, 2873 2889.
5. Charlesworth D (2000) How can two-gene models of self-incompatibility generate new specificities? Plant Cell, 12, 309 310.
6. Charlesworth D, Bartolomé C, Schierup MH, Mable BK (2003) Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Molecular Biology and Evolution, 20, 1741 1753.
7. Chookajorn T, Kachroo A, Ripoll DR, Clark AG, Nasrallah JB (2004) Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand. Proceedings of the National Academy of Sciences of the USA, 101, 911 917.
8. Clark AG, Kao T-H (1994) Self-incompatibility: theoretical concepts and evolution. In: Genetic Control of Self-Incompatibility and Reproductive Development in Flowering Plants (eds Williams EG, Clarke AE, Knox RB), pp. 220 242. Kluwer Academic Publishers, Boston.
9. Comps B, Thiébaut B, Paule L, Merzeau D, Letouzey J (1990) Allozymic variability in beechwoods (Fagus sylvatica L.) over central Europe: spatial differentiation among and within populations. Heredity, 65, 407 417.
10. Dumolin-Lapègue S, Demesure B, Fineschi S, Le Corre V, Petit RJ (1997) Phylogeographic structure of white oaks throughout the European continent. Genetics, 146, 1475 1487.
11. Emerson S (1939) A preliminary survey of the Oenothera organensis population. Genetics, 24, 524 537.
12. Fisher RA (1961) The possible differentiation in wild populations of Oenothera organensis. Australian Journal of Biological Sciences, 14, 76 78.
13. Glémin S, Gaude T, Guilleman M-L, Lourmas M, Olivieri I, Mignot A (2005) Balancing selection in the wild: Testing population genetics theory of self-incompatibility in the rare species Brassica insularis. Genetics, 171, 279 289.
14. Hampe A, Arroyo J, Jordano P, Petit RJ (2003) Rangewide phylogeography of a bird-dispersed Eurasian shrub: contrasting Mediterranean and temperate glacial refugia. Molecular Ecology, 12, 3415 3426.
15. Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Jounal of Molecular Evolution, 22, 160 174.
16. Heuertz M, Fineschi S, Anzidei M et al. (2004) Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Molecular Ecology, 13, 3437 3452.
17. Igic B, Kohn JR (2001) Evolutionary relationships among self-incompatibility RNases. Proceedings of the National Academy of Sciences of the USA, 98, 13167 13171.
18. Igic B, Bohs L, Kohn JR (2004) Historical inferences from the self-incompatibility locus. New Phytologist, 161, 97 105.
19. Igic B, Bohs L, Kohn JR (2006) Ancient polymorphism reveals unidirectional breeding system shifts. Proceedings of the National Academy of Sciences of the USA, 103, 1359 1363.
20. Ioerger TR, Clark AG, Kao T-H (1990) Polymorphism at the self-incompatibility locus in Solanaceae predates speciation. Proceedings of the National Academy of Sciences of the USA, 87, 9732 9735.
21. Ishizumi T, Shinkawa T, Sakiyama F, Norioka S (1998) Primary structural features of rosaceous S-RNases associated with gametophytic self- incompatibility. Plant Molecular Biology, 37, 931 941.
22. Kato S, Mukai Y (2004) Allelic diversity of S-RNase at the self-incompatibility locus in a natural flowering cherry populations (Prunus lannesiana var. speciosa). Heredity, 92, 249 256.
23. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111 120.
24. King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology, 7, 1151 1161.
25. Lawrence MJ (2000) Population genetics of homomorphic self-incompatibility polymorphisms in flowering plants. Annals of Botany, 85 (Suppl. A), 221 226.
26. Lu Y (2001) Roles of lineage sorting and phylogenetic relationship in the genetic diversity at the self-incompatibility locus. Heredity, 86, 195 205.
27. Lu Y (2006) Historical events and allelic polymorphism at the gametophytic self-incompatibility locus in Solanaceae. Heredity, 96, 22 28.
28. Mantel N (1974) Approaches to a health research occupancy problem. Biometrics, 30, 355 362.
29. Matton DP, Luu DT, Xike Q, Laublin G, O'Brien M, Maes O, Morse D, Cappadocia M (1999) Production of an S RNase with dual specificity suggests a novel hypothesis for the generation of new S alleles. Plant Cell, 11, 2087 2098.
30. May G, Shaw F, Badrane H, Vekemans X (1999) The signature of balancing selection: fungal mating compatibility gene evolution. Proceedings of the National Academy of Sciences of the USA, 96, 9172 9177.
31. Miege C, Ruffino-Chable V, Schierup MH, Cabrillac D, Dumas C, Gaude T, Cock JM (2001) Intrahaplotype polymorphism at the Brassica S locus. Genetics, 159, 811 822.
32. Muirhead CA (2001) Consequences of population structure on genes under balancing selection. Evolution, 55, 1532 1541.
33. Nunes MDS, Santos RAM, Ferreira SM, Vieira J, Vieira CP (2006) Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. New Phytologist, 172, 577 587.
34. O'Donnell S, Lawrence MJ (1984) The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. IV. The estimation of the number of alleles in a population. Heredity, 53, 495 507.
35. O'Donnell S, Lane MD, Lawrence MJ (1993) The population genetics of self-incompatibility polymorphism in Papaver rhoeas. VI. Estimation of the overlap between the allelic complements of a pair of populations. Heredity, 71, 591 595.
36. Paxman GJ (1963) The maximum likelihood estimation of the number of self-sterility alleles in a population. Genetics, 43, 1029 1042.
37. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
38. Raspé O, Jacquemart A-L (1998) Allozyme diversity and genetic structure of European populations of Sorbus aucuparia L. (Rosaceae: Maloideae). Heredity, 81, 537 545.
39. Raspé O, Kohn JR (2002) S-allele diversity in Sorbus aucuparia and Crataegus monogyna (Rosaceae: Maloideae). Heredity, 88, 458 465.
40. Raspé O, Saumitou-Laprade P, Cuguen J, Jacquemart A-L (2000) Chloroplast DNA haplotype variation and populations differentiation in Sorbus aucuparia L. (Rosaceae: Maloideae). Molecular Ecology, 9, 1113 1122.
41. Rendell S, Ennos RA (2003) Chloroplast DNA diversity of the dioecious European tree Ilex aquifolium L. (English holly). Molecular Ecology, 12, 2681 2688.
42. Richman AD, Kao T-H, Schaeffer SW, Uyenoyama MK (1995) S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle). Heredity, 75, 405 415.
43. Richman AD, Kohn JR (2000) Evolutionary genetics of self-incompatibility in the Solanaceae. Plant Molecular Biology, 42, 169 179.
44. Sassa H, Nishio T, Kowyama Y, Hirano H, Koba T, Ikehashi H (1996) Self-incompatibility (S) alleles of the Rosaceae encode members of a distinct class of the T2/S ribonuclease superfamily. Molecular and General Genetics, 250, 547 557.
45. Schierup MH (1998) The number of self-incompatibility alleles in a finite, subdivided population. Genetics, 149, 1153 1162.
46. Schierup MH, Vekemans X, Charlesworth D (2000) The effect of subdivision on variation at multi-allelic loci under balancing selection. Genetical Research, 76, 51 62.
47. Steinbachs JE, Holsinger KE (2002) S-RNase-mediated gametophytic self-incompatibility is ancestral in eudicots. Molecular Biology and Evolution, 19, 825 829.
48. Swofford DL (2002) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
49. Takahata N (1993) Evolutionary genetics of human paleo-populations. In: Mechanisms of Molecular Evolution (eds Takahata N, Clark AG), pp. 1 21. Sinauer, Sunderland, Massachusetts.
50. Takahata N (1990) A simple genealogical structure of strongly balanced allelic lines and trans-specific evolution of polymorphism. Proceedings of the National Academy of Sciences of the USA, 87, 2419 2425.
51. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673 4680.
52. Uyenoyama MK, Newbigin E (2000) Evolutionary dynamics of dual-specificity self-incompatibility alleles. Plant Cell, 12, 310 312.
53. Uyenoyama MK, Zhang Y, Newbigin E (2001) On the origin of self-incompatibility haplotypes: transition through self-compatible intermediates. Genetics, 157, 1805 1817.
54. Vekemans X, Slatkin M (1994) Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics, 137, 1157 1165.
55. Vieira CP, Charlesworth D, Vieira J (2003) Evidence for rare recombination at the gametophytic self-incompatibility locus. Heredity, 91, 262 267.
56. 3 allele of the Papaver rhoeas self-incompatibility gene isolated from different populations. Plant Molecular Biology, 30, 983 994.
57. Wang X, Hughes AL, Tsukamoto T, Ando T, Kao T (2001) Evidence that intragenic recombination contributes to allelic diversity of the S-RNase gene at the self-incompatibility (S) locus in Petunia inflata. Plant Physiology, 125, 1012 1022.
58. Weller SG, Donoghue MJ, Charlesworth D (1995) The evolution of self-incompatibility in angiosperms: a phylogenetic approach. In: Experimental and Molecular Approaches to Plant Biosystematics (eds Hoch PC, Stephenson AG), pp. 355 382. Missouri Botanical Garden, St. Louis.
59. Wright S (1939) The distribution of self-sterility alleles in populations. Genetics, 24, 538 552.