Genomic diversity of human papillomavirus genotype 53 in an ethnogeographically closed cohort of white European women

Journal of Medical Virology

Volumn 79, Issue 4, 2007, Pages 431-438

  Kocjan, Boštjan J ^a   Seme, Katja ^a   Močilnik, Tina ^a   Jančar, Nina ^b   Vrtačnik Bokal, Eda ^b   Poljak, Mario ^a,c  

^a Institute of Microbiology and Immunology   (Slovenia)

^b UNIVERSITY MEDICAL CENTRE LJUBLJANA   (Slovenia)

^c UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Genomic diversity; Genomic variants; HPV 53; Human papillomaviruses; Slovenia

Indexed keywords

ARTICLE; CAUCASIAN; COHORT ANALYSIS; CONTROLLED STUDY; E6 GENE; E7 GENE; ETHNOGRAPHY; FEMALE; GENE IDENTIFICATION; GENETIC EPIDEMIOLOGY; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 53; HUMAN PAPILLOMAVIRUS TYPE 6; LCR GENE; MAJOR CLINICAL STUDY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; SLOVENIA; VIRAL GENETICS; VIRUS CHARACTERIZATION; VIRUS GENE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS ISOLATION;

ALPHAPAPILLOMAVIRUS; COHORT STUDIES; EUROPEAN CONTINENTAL ANCESTRY GROUP; FEMALE; GENETIC VARIATION; GENOME, VIRAL; HUMANS; MOLECULAR SEQUENCE DATA; PAPILLOMAVIRUS INFECTIONS; PHYLOGENY; SLOVENIA;

HUMAN PAPILLOMAVIRUS; PAPILLOMAVIRIDAE;

EID: 33847673130     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.20787     Document Type: Article

References (30)

1. Ahdieh L, Klein RS, Burk R, Cu-Uvin S, Schuman P, Duerr A, Safaeian M, Astemborski J, Daniel R, Shah K. 2001. Prevalence, incidence, and type-specific persistence of human papillomavirus in human immunodeficiency virus (HIV)-positive and HIV-negative women. J Infect Dis 184:682-690.
2. Bernard HU, Calleja-Macias IE, Dunn ST. 2006. Genome variation of human papillomavirus types: Phylogenetic and medical implications. Int J Cancer 118:1071-1076.
3. Bosch FX, Lorincz A, Munoz N, Meijer CJLM, Shah KV. 2002. The causal relation between human papillomavirus and cervical cancer. J Clin Pathol 55:244-265.
4. Brown DR, Shew ML, Qadadri B, Neptune N, Vargas M, Tu W, Juliar BE, Breen TE, Fortenberry JD. 2005. A longitudinal study of genital human papillomavirus infection in a cohort of closely followed adolescent women. J Infect Dis 191:182-192.
5. Calleja-Macias IE, Villa LL, Prado JC, Kalantari M, Allan B, Williamson AL, Chung LP, Collins RJ, Zuna RE, Dunn ST, Chu TY, Cubie HA, Cuschieri K, von Knebel-Doeberitz M, Martins CR, Sanchez GI, Bosch FX, Munoz N, Bernard HU. 2005a. Worldwide genomic diversity of the high-risk human papillomavirus types 31, 35, 52, and 58, four close relatives of human papillomavirus type 16. J Virol 79:13630-13640.
6. Calleja-Macias IE, Kalantari M, Allan B, Williamson AL, Chung LP, Collins RJ, Zuna RE, Dunn ST, Ortiz-Lopez R, Barrera-Saldana HA, Cubie HA, Cuschieri K, Villa LL, Bernard HU. 2005b. Papillomavirus subtypes are natural and old taxa: Phylogeny of human papillomavirus types 44 and 55 and 68a and -b. J Virol 79:6565-6569.
7. Cerqueira DM, Camara GN, da Cruz MR, Silva EO, Brigido MM, Carvalho LG, Martins CR. 2003. Variants of human papillomavirus types 53, 58 and 66 identified in Central Brazil. Virus Genes 26:83-87.
8. Chan SY, Chew SH, Egawa K, Grussendorf-Conen EI, Honda Y, Ruebben A, Tan KC, Bernard HU. 1997. Phylogenetic analysis of the Human papillomavirus type 2 (HPV-2), HPV-27, and HPV-57 group, which is associated with common warts. Virology 239:296-302.
9. Clifford GM, Gallus S, Herrero R, Munoz N, Snijders PJ, Vaccarella S, Anh PT, Ferreccio C, Hieu NT, Matos E, Molano M, Rajkumar R, Ronco G, de Sanjose S, Shin HR, Sukvirach S, Thomas JO, Tunsakul S, Meijer CJ, Franceschi S; IARC HPV Prevalence Surveys Study Group. 2005. Worldwide distribution of human papillomavirus types in cytologically normal women in the International Agency for Research on Cancer HPV prevalence surveys: A pooled analysis. Lancet 366:991-998.
10. Cuschieri KS, Cubie HA, Whitley MW, Gilkison G, Arends MJ, Graham C, McGoogan E. 2005. Persistent high risk HPV infection associated with development of cervical neoplasia in a prospective population study. J Clin Pathol 58:946-950.
11. de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H. 2004. Classification of papillomaviruses. Virology 324:17-27.
12. Deau MC, Favre M, Jablonska S, Rueda LA, Orth G. 1993. Genetic heterogeneity of oncogenic human papillomavirus type 5 (HPV5) and phylogeny of HPV5 variants associated with epidermodysplasia verruciformis. J Clin Microbiol 31:2918-2926.
13. Delius H, Hofmann B. 1994. Primer-directed sequencing of human papillomavirus types. Curr Top Microbiol Immunol 186:13-31.
14. Gallahan D, Muller M, Schneider A, Delius H, Kahn T, de Villiers EM, Gissmann L. 1989. Human papillomavirus type 53. J Virol 63:4911-4912.
15. Heinzel PA, Chan SY, Ho L, O'Connor M, Balaram P, Campo MS, Fujinaga K, Kiviat N, Kuypers J, Pfister H, Steinberg BM, Tay SK, Villa LL, Bernard HU. 1995. Variation of human papillomavirus type 6 (HPV-6) and HPV-11 genomes sampled throughout the world. J Clin Microbiol 33:1746-1754.
16. Ho L, Chan SY, Burk RD, Das BC, Fujinaga K, Icenogle JP, Kahn T, Kiviat N, Lancaster W, Mavromara P, Labropoulou V, Mitrani-Rosenbaum S, Norrild B, Pillai MR, Stoerker J, Syrjaenen K, Syrjaenen S, Tay SK, Villa LL, Wheeler CM, Williamson AL, Bernard HU. 1993. The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and movement of ancient human populations. J Virol 67:6413-6414.
17. Lazcano-Ponce E, Herrero R, Munoz N, Cruz A, Shah KV, Alonso P, Hernandez P, Salmeron J, Hernandez M. 2001. Epidemiology of HPV infection among Mexican women with normal cervical cytology. Int J Cancer 91:412-420.
18. Liaw KL, Glass AG, Manos MM, Greer CE, Scott DR, Sherman M, Burk RD, Kurman RJ, Wacholder S, Rush BB, Cadell DM, Lawler P, Tabor D, Schiffman M. 1999. Detection of human papillomavirus DNA in cytologically normal women and subsequent cervical squamous intraepithelial lesions. J Natl Cancer Inst 91:954-960.
19. Mayrand MH, Coutlee F, Hankins C, Lapointe N, Forest P, de Ladurantaye M, Roger M. 2000. Detection of human papillomavirus type 16 DNA in consecutive genital samples does not always represent persistent infection as determined by molecular variant analysis. J Clin Microbiol 38:3388-3393.
20. Munoz N, Bosch FX, de Sanjose S, Herrero R, Castellsague X, Shah KV, Snijders PJ, Meijer CJ. 2003. Epidemiologic classification of human papillomavirus types associated with cervical cancer. N Engl J Med 348:518-527.
21. Munoz N, Bosch FX, Castellsague X, Diaz M, de Sanjose S, Hammouda D, Shah KV, Meijer CJ. 2004. Against which human papillomavirus types shall we vaccinate and screen? The international perspective. Int J Cancer 111:278-285.
22. Ong CK, Chan SY, Campo MS, Fujinaga K, Mavromara P, Labropoulou V, Pfister H, Tay SK, ter Meulen J, Villa LL, Bernard HU. 1993. Evolution of human papillomavirus type 18: An ancient phylogenetic root in Africa and intratype diversity reflect coevolution with human ethnic groups. J Virol 67:6424-6431.
23. Poljak M, Marin IJ, Seme K, Vince A. 2002. Hybrid Capture II HPV test detects at least 15 human papillomavirus genotypes not included in its current high risk cocktail. J Clin Virol 25:S89-S97.
24. Poljak M, Fujs K, Seme K, Kocjan BJ, Vrtacnik-Bokal E. 2005. Retrospective and prospective evaluation of the Amplicor HPV test for detection of 13 high-risk human papillomavirus genotypes on 862 clinical samples. Acta Dermatovenerol Alp Panonica Adriat 14:147-152.
25. Prado JC, Calleja-Macias IE, Bernard HU, Kalantari M, Macay SA, Allan B, Williamson AL, Chung LP, Collins RJ, Zuna RE, Dunn ST, Ortiz-Lopez R, Barrera-Saldana HA, Cubie HA, Cuschieri K, von Knebel-Doeberitz M, Sanchez GI, Bosch FX, Villa LL. 2005. Worldwide genomic diversity of the human papillomaviruses-53, 56, and 66, a group of high-risk HPVs unrelated to HPV-16 and HPV-18. Virology 340:95-104.
26. Seme K, Fujs K, Kocjan BJ, Poljak M. 2006. Resolving repeatedly borderline results of Hybrid Capture 2 HPV DNA Test using polymerase chain reaction and genotyping. J Virol Methods 134:252-256.
27. Stewart AC, Eriksson AM, Manos MM, Munoz N, Bosch FX, Peto J, Wheeler CM. 1996. Intratype variation in 12 human papillomavirus types: A worldwide perspective. J Virol 70:3127-3136.
28. Xi LF, Demers GW, Koutsky LA, Kiviat NB, Kuypers J, Watts DH, Holmes KK, Galloway DA. 1995. Analysis of human papillomavirus type 16 variants indicates establishment of persistent infection. J Infect Dis 172:747-755.
29. Yamada T, Manos MM, Peto J, Greer CE, Munoz N, Bosch FX, Wheeler CM. 1997. Human papillomavirus type 16 sequence variation in cervical cancers: A worldwide perspective. J Virol 71:2463-2472.
30. zur Hausen H. 1996. Papillomavirus infection-A major cause of human cancers. Biochim Biophys Acta 1288:F55-F78.