DNA bending versus DNA end joining activity of HMGB1 protein is modulated in vitro by acetylation

Biochemistry

Volumn 46, Issue 8, 2007, Pages 2111-2117

  Ugrinova, Iva ^a   Mitkova, Elena ^a   Moskalenko, Cendrine ^b   Pashev, Iliya ^a   Pasheva, Evdokia ^a  

^a INSTITUTE OF MOLECULAR BIOLOGY   (Bulgaria)

^b Laboratoire Joliot Curie   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; ATOMIC FORCE MICROSCOPY; CROSSLINKING; MOLECULAR RECOGNITION; PROTEINS;

BINDING AFFINITY; DNA END JOINING; DNA FRAGMENTS; LINEAR DUPLEX DNA;

DNA SEQUENCES;

CURVED DNA; DNA FRAGMENT; HIGH MOBILITY GROUP B1 PROTEIN; POLYDEOXYRIBONUCLEOTIDE SYNTHASE;

ACETYLATION; ARTICLE; ATOMIC FORCE MICROSCOPY; CROSS LINKING; DNA PROBE; ENZYME ACTIVITY; HELA CELL; HUMAN; HUMAN CELL; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION;

ACETYLATION; ANIMALS; DNA; DNA LIGASES; HMGB1 PROTEIN; HUMANS; MICE; NUCLEIC ACID CONFORMATION; PROTEIN BINDING; TUMOR CELLS, CULTURED;

EID: 33847646297     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0614479     Document Type: Article

References (37)

1. Bustin, M. (2001) Revised nomenclature for high mobility group (HMG) chromosomal proteins, Trends Biochem. Sci. 26, 152-153.
2. Pil, P. M., Chow, C. S., and Lippard, S. J. (1993) High mobility group 1 protein mediates DNA bending as determined by ring closures, Proc. Natl. Acad. Sci. U.S.A. 90, 9465-9469.
3. Paull, T. T., Hakynson, M. J., and Johnson, R. C. (1993) The non-specific DNA-binding and bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures, Genes Dev. 7, 1521-1534.
4. Onate, S. A., Prendergast, P., Wagner, J. P., Nissen, M., Reeves, R., Pettijhon, D. E., and Edwards, D. P. (1994) The DNA-bending protein HMG-1 enhances progesterone receptor binding to its target DNA sequences, Mol. Cell. Biol. 14, 3375-3391.
5. Bianchi, M. E., Beltrame, M., and Paonessa, G. (1989) Specific recognition of cruciform DNA by nuclear protein HMG1, Science 243, 1056-1059.
6. Pil, P. M., and Lippard, S. J. (1992) Specific binding of chromosomal protein HMG1 to DNA damaged by the anticancer drug cisplatin, Science 256, 234-237.
7. Pasheva, E. A., Pashev, I. G., and Favre, A. (1998) Preferential binding of high mobility group 1 protein to UV-damaged DNA. Role of the COOH-terminal domain, J. Biol. Chem. 273, 24730-24736.
8. Thomas, J. O., and Travers, A. A. (2001) HMG1 and 2, and related architectural DNA-binding proteins, Trends Biochem. Sci. 26, 167-174.
9. Travers, A. A. (2003) Priming the nucleosome: A role for HMGB proteins? EMBO Rep. 4, 131-136.
10. Ross, E. D., Hardwidge, P. R., and Maher, L. J., III (2001) HMGB proteins and DNA flexibility in transcription activation, Mol. Cell. Biol. 21, 6598-6605.
11. Mitsouras, K., Wong, B., Arayata, C., Johnson, R. C., and Carey, M. (2002) The DNA architectural protein HMGB1 displays two modes of action that promote enhanseosome assembly, Mol. Cell. Biol. 22, 4390-4401.
12. Bonaldi, T., Langst, G., Strohner, R., Becker, P. B., and Bianchi, M. E. (2002) The DNA chaperone HMGB1 facilitates ACF/CH-RAC-dependent nucleosome sliding, EMBO J. 21, 6865-6873.
13. Sheflin, L. G., Fucile, N. W., and Spaulding, S. W. (1993) The specific interactions of HMG1 and 2 with negatively supercoiled DNA are modulated by their acidic C-terminal domains and involve cysteine residues in their HMG1/2 boxes, Biochemistry 32, 3238-3248.
14. Stros, M., Stokrova, J., and Thomas, J. O. (1994) DNA looping by the HMG-box domains of HMG1 and modulation of DNA binding by the acidic C-terminal domain, Nucleic Acids Res. 22, 1044-1051.
15. Wisniewski, J. R., and Schulze, E. (1994) High affinity interaction of dipteran high mobility group (HMG) proteins 1 with DNA is modulated by COOH-terminal regions flanking the HMG box domain, J. Biol. Chem. 289, 10713-10719.
16. Wisniewski, J. P., Szewczuk, Z., Petry, I., Schwanbeck, R., and Renner, U. (1999) Constitutive phosphorylation of the acidic tails of the high mobility group 1 proteins by casein kinase II alters their conformation, stability and DNA binding specificity, J. Biol. Chem. 274, 20116-20122.
17. Stemmer, C., Schwander, A., Bauw, G., Fojan, P., and Grasser, K. D. (2002) Protein kinase CK2 differentially phosphorylated maize chromosomal high mobility group B (HMGB) proteins, modulating their stability and DNA interactions, J. Biol. Chem. 277, 1092-1098.
18. Krohn, N. M., Stemmer, C., Fojan, P., Grimm, R., and Grasser, K. D. (2003) Protein kinase CK2 phosphorylates the high mobility group domain protein SSRP1, inducing the recognition of UV-damaged DNA, J. Biol. Chem. 278, 12710-12715.
19. Ugrinova, I., Pasheva, E. A., Armengaud, J., and Pashev, I. G. (2001) In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures, Biochemistry 40, 14655-14660.
20. Pasheva, E. A., Sarov, M., Bidjekov, K., Ugrinova, I., Sarg, B., Lindner, H., and Pashev, I. G. (2004) In vitro acetylation of HMGB-1 and -2 proteins by CBP: The role of the acidic tail, Biochemistry 43, 2935-2940.
21. Mitkova, E., Ugrinova, I., Pashev, I. G., and Pasheva, E. A. (2005) The inhibitory effect of HMGB-1 protein on the repair of cisplatin-damaged DNA is accomplished through the acidic domain, Biochemistry 44, 5893-5898.
22. Yang, W. M., Yao, Y. L., Sun, J. M., Davie, J. R., and Seto, E. (1997) Isolation and characterization of cDNAs corresponding to an additional member of the human histone deacetylase gene family, J. Biol. Chem. 272, 28001-28007.
23. Laherty, C. D., Yang, W. M., Sun, J. M., Davie, J. R., Seto, E., and Eisenman, R. N. (1997) Histone deacetylases associated with the mSin3 corepressor mediate Mad transcriptional repression, Cell 89, 349-356.
24. Hendzel, M. J., Delcuve, G. P., and Davie, J. R. (1991) Histone deacetylase is a component of the internal nuclear matrix, J. Biol. Chem. 266, 21936-21942.
25. Bonner, W. M., West, M. H., and Stedman, J. D. (1980) Two-dimensional gel analysis of acid extracts of nuclei, cells and tissues, Eur. J. Biochem. 109, 17-23.
26. Baumert, H. G., Skold, S.-E., and Kurland, C. G. (1978) RNA-protein neighbourhoods of the ribosome obtained by crosslinking, Eur. J. Biochem. 89, 353-359.
27. Ritt, C., Grimm, R., Fernandes, S., Alonso, J. C., and Grasser, K. D. (1998) Basic and acidic regions flanking the HMG domain of maize HMGa modulated the interactions with DNA and the self association of the protein, Biochemistry 37, 2673-2681.
28. Lyubchenko, Y. L., Oden, P. I., Lindsay, S. M., and Dunker, K. A. (1993) Atomic force microscopy of DNA and bacteriophage in air, water and propanol: The role of adhesion forces, Nucleic Acids Res. 21, 1117-1123.
29. Lee, K. B., and Thomas, J. O. (2000) The effect of the acidic tail on the DNA-binding properties of the HMG1,2 class of proteins: Insights from tail switching and tail removal, J. Mol. Biol. 304, 135-149.
30. Teo, S.-H., Grasser, K. D., and Thomas, J. O. (1995) Differences in the DNA binding properties of the high mobility group (HMG) box domains of HMG1 and the sex-determining factor (SRY), Eur. J. Biochem. 230, 943-950.
31. Grasser, K. D., Teo, S.-H., Lee, K.-B., Broadhurst, R. W., Rees, C., Hardman, C. H., and Thomas, J. O. (1998) DNA binding properties of the tandem HMG boxes of high-mobility-group protein1 (HMG1), Eur. J. Biochem. 253, 787-795.
32. Stros, M., Cherny, D., and Jovin, T. M. (2000) HMG1 protein stimulates DNA end joining by promoting association of DNA molecules via their ends, Eur. J. Biochem. 267, 4088-4097.
33. Nagaki, S., Yamamoto, M., Yumoto, Y., Shirakawa, H., Yoshida, M., and Teraoka, H. (1998) Non-histone chromosomal proteins HMG1 and 2 enhance ligation reaction of DNA double-strand breaks, Biochem. Biophys. Res. Commun. 246, 137-141.
34. Stros, M. (1998) DNA bending by the chromosomal protein HMG1 and its high mobility group box domains. Effect of flanking sequences. J. Biol. Chem. 273, 10355-10361.
35. Sterner, R., Vidali, G., Heinrikson, R. L., and Allfrey, V. G. (1978) Postsynthetic modification of high mobility group proteins. Evidence that high mobility group proteins are acetylated, J. Biol. Chem. 253, 7601-7609.
36. Dyson, M., and Walker, J. M. (1984) Chromatin-associated protease from calf thymus, Int. J. Pept. Protein Res. 24, 201-207.
37. Sterner, R., Vidali, G., and Allfrey, V. G. (1979) Discrete proteolytic cleavage of high mobility group proteins, Biochem. Biophys. Res. Commun. 89, 129-133.