Pesticide induced alterations in gene expression in the lobster, Homarus americanus

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 2, Issue 1, 2007, Pages 44-52

  Horst, Michael N ^a   Walker, Anna N ^a   Bush, Parshall ^b   Wilson, Thomas ^c   Chang, Ernest S ^d   Miller, Tim ^e   Larkin, Patrick ^f  

^a MERCER UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c OHIO STATE UNIVERSITY   (United States)

^d UNIVERSITY OF CALIFORNIA DAVIS   (United States)

^e UNIVERSITY OF MAINE   (United States)

^f EcoArray LLC   (United States)

Author keywords

Crustaceans; Decapods; Gene expression; Hepatopancreas; Insect growth regulators (IGR); Lobsters; Methionine cycle; Methylation; Pesticides; Ubiquitination

Indexed keywords

ALDEHYDE REDUCTASE; BETA TUBULIN; BETAINE HOMOCYSTEINE METHYLTRANSFERASE; HEMOCYANIN; INITIATION FACTOR 2; MEMBRANE PROTEIN; METHIONINE; METHOPRENE; PESTICIDE; REGULATOR PROTEIN; STRUCTURAL PROTEIN; TRYPSIN; UBIQUITIN CONJUGATING ENZYME; UBIQUITIN THIOLESTERASE;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; GENE IDENTIFICATION; HEPATOPANCREAS; LOBSTER; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN METABOLISM; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SUBTRACTIVE HYBRIDIZATION; TARGET CELL; UPREGULATION;

CRUSTACEA; HEXAPODA; HOMARUS AMERICANUS; LOBSTER;

EID: 33847415886     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2006.11.004     Document Type: Article

References (51)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Anderson P., and Kedersha N. Visibly stressed: the role of eIF2, TIA-1 and stress granules in protein translation. Cell Stress Chaperones 7 (2002) 213-221
3. Bensaude O., Bellier S., Dubois M., Giannoni F., and Nguyen V. Heat-shock induced protein modifications and modulation of enzyme activities. Exp. Sup. 77 (1996) 199-219
4. Brouwer M., Schlenk D., Ringwood A.H., and Brouwer-Hoexum T. Metal-specific induction of metallothionein isoforms in the blue crab Callinectes sapidus in response to single- and mixed-metal exposure. Arch. Biochem. Biophys. 294 (1992) 461-468
5. Brouwer M., Larkin P., Brown-Peterson N., King C., Manning S., and Denslow N. Effects of hypoxia on gene and protein expression in the blue crab, Callinectes sapidus. Mar. Environ. Res. 58 (2004) 787-792
6. Caplen N.J., Parrish S., Imani F., Fire A., and Morgan R.A. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 9742-9747
7. Chavous D.A., Jackson F.R., and O'Connor C.M. Extension of the Drosophila lifespan by overexpression of a protein repair methyltransferase. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 14814-14818
8. Clemens M.J. Initiation factor eIF2 alpha phosphorylation in stress responses and apoptosis. Prog. Mol. Subcell. Biol. 27 (2001) 57-89
9. Davis M.M., Cohen D.I., Nielsen E.A., Steinmetz M., Paul W.E., and Hood L. Cell-type-specific cDNA probes and the murine I region: the localization and orientation of Ad alpha. Proc. Natl. Acad. Sci. U. S. A. 81 (1984) 2194-2198
10. Delgado-Reyes C.V., and Garrow T.A. High sodium chloride intake decreases betaine-homocysteine S-methyltransferase expression in guinea pig liver and kidney. Am. J. Physiol. 288 (2005) R182-R187
11. Demers D.M., Metcalf A.E., Talbot P., and Hyman B.C. Multiple lobster tubulin isoforms are encoded by a simple gene family. Gene 171 (1996) 185-191
12. Duguid J.R., and Dinauer M.C. Library subtraction of in vitro cDNA libraries to identify differentially expressed genes in scrapie infection. Nucleic Acids Res. 18 (1990) 2789-2792
13. Edgar K.A., Noriega F.G., Bonning B.C., and Wells M.A. Recombinant juvenile hormone esterase, an effective tool for modifying juvenile hormone-dependent expression of the early trypsin gene in mosquitoes. Insect Mol. Biol. 9 (2000) 27-31
14. Ermolaeva O.D., and Sverdlov E.D. Subtractive hybridization, a technique for extraction of DNA sequences distinguishing two closely related genomes: critical analysis. Genet. Anal. 13 (1996) 49-58
15. Fisher B.R., Heredia D.J., and Brown K.M. Heat-induced alterations in embryonic cytoskeletal and stress proteins precede somite malformations in rat embryos. Teratog. Carcinog. Mutagen. 16 (1996) 49-64
16. Gurskaya N.G., Diatchenko L., Chenchik A., Siebert P.D., Khaspekov G.L., Lukyanov K.A., Vagner L.L., Ermolaeva O.D., Lukyanov S.A., and Sverdlov E.D. Equalizing cDNA subtraction based on selective suppression of polymerase chain reaction: cloning of Jurkat cell transcripts induced by phytohemaglutinin and phorbol 12-myristate 13-acetate. Anal. Biochem. 240 (1996) 90-97
17. Hara E., Kato T., Nakada S., Sekiya S., and Oda K. Subtractive cDNA cloning using oligo(dT)30-latex and PCR: isolation of cDNA clones specific to undifferentiated human embryonal carcinoma cells. Nucleic Acids Res. 19 (1991) 7097-7104
18. Hedrick S.M., Cohen D.I., Nielsen E.A., and Davis M.M. Isolation of cDNA clones encoding T cell-specific membrane-associated proteins. Nature 308 (1984) 149-153
19. Hernandez-Cortes P., Cerenius L., Garcia-Carreno F., and Soderhall K. Trypsin from Pacifastacus leniusculus hepatopancreas: purification and cDNA cloning of the synthesized zymogen. Biol. Chem. 380 (1999) 499-501
20. Horst M.N. The biosynthesis of crustacean chitin by a microsomal enzyme from larval brine shrimp. J. Biol. Chem. 256 (1981) 1412-1419
21. Inouye S., Watanabe K., Nakamura H., and Shimomura O. Secretional luciferase of the luminous shrimp Oplophorus gracilirostris: cDNA cloning of a novel imidazopyrazinone luciferase(1). FEBS Lett. 481 (2000) 19-25
22. Kawabata S., Miura T., Morita T., Kato H., Fujikawa K., Iwanaga S., Takada K., Kimura T., and Sakakibara S. Highly sensitive peptide-4-methylcoumaryl-7-amide substrates for blood-clotting proteases and trypsin. Eur. J. Biochem. 172 (1988) 17-25
23. Kethidi D., Perera S.C., Zheng S., Feng Q., Krell P., Retnakaran A., and Palli S.R. Identification and characterization of a juvenile hormone (JH) response region in the JH esterase gene from the spruce budworm, Choristoneura fumiferana. J. Biol. Chem. 279 (2004) 19634-19642
24. Kindrachuk J., Parent J., Davies G.F., Dinsmore M., Attah-Poku S., and Napper S. Overexpression of l-isoaspartate O-methyltransferase in Escherichia coli increases heat shock survival by a mechanism independent of methyltransferase activity. J. Biol. Chem. 278 (2003) 50880-50886
25. Klein B., Sellos D., and van Wormhoudt A. Genomic organization and polymorphism of a crustacean trypsin multi-gene family. Gene 216 (1998) 123-129
26. Koenders A., Yu X., Chang E.S., and Mykles D.L. Ubiquitin and actin expression in claw muscles of land crab, Gecarcinus lateralis, and American lobster, Homarus americanus: differential expression of ubiquitin in two slow muscle fiber types during molt-induced atrophy. J. Exp. Zool. 292 (2002) 618-632
27. Kusche K., and Burmester T. Molecular cloning and evolution of lobster hemocyanin. Biochem. Biophys. Res. Commun. 282 (2001) 887-892
28. Lehnert S.A., and Johnson S.E. Expression of hemocyanin and digestive enzyme messenger RNAs in the hepatopancreas of the black tiger shrimp Penaeus monodon. Comp. Biochem. Physiol. B 133 (2002) 163-171
29. Lisitsyn N., and Wigler M. Cloning the differences between two complex genomes. Science 259 (1993) 946-951
30. Mak A.S., Choi C.L., Tiu S.H., Hui J.H., He J.G., Tobe S.S., and Chan S.M. Vitellogenesis in the red crab Charybdis feriatus: hepatopancreas-specific expression and farnesoic acid stimulation of vitellogenin gene expression. Mol. Reprod. Dev. 70 (2005) 288-300
31. Mohrlen F., Baus S., Gruber A., Rackwitz H.R., Schnolzer M., Vogt G., and Zwilling R. Activation of pro-astacin. Immunological and model peptide studies on the processing of immature astacin, a zinc-endopeptidase from the crayfish Astacus astacus. Eur. J. Biochem. 268 (2001) 2540-2546
32. Mykles D.L., Haire M.F., and Skinner D.M. Immunocytochemical localization of actin and tubulin in the integument of land crab (Gecarcinus lateralis) and lobster (Homarus americanus). J. Exp. Zool. 286 (2000) 329-342
33. Noriega F.G., Ribeiro J.M.C., Koener J.F., Valenzuela J.G., Hernendez-Martinez S., Pham V.M., and Feyereisen R. Comparative genomics of insect juvenile hormone biosynthesis. Insect Biochem. Mol. Biol. 36 (2006) 366-374
34. Pan D., He N., Yang Z., Liu H., and Xu X. Differential gene expression profile in hepatopancreas of WSSV-resistant shrimp (Penaeus japonicus) by suppression subtractive hybridization. Dev. Comp. Immunol. 29 (2005) 103-112
35. Radhakrishnaiah K., Sivaramakrishna B., Suresh A., and Chamundeswari P. Pesticidal impact on the protein metabolism of freshwater field crab, Oziotelphusa senex senex (Fabricius). Biomed. Environ. Sci. 8 (1995) 137-148
36. Reddy P.S., and Bhagyalakshmi A. Modulation of protein metabolism in selected tissues of the crab, Oziotelphusa senex senex (Fabricius), under fenvalerate-induced stress. Ecotoxicol. Environ. Saf. Mar. 27 (1994) 214-219
37. Reinke R., Krantz D.E., Yen D., and Zipursky S.L. Chaoptin, a cell surface glycoprotein required for Drosophila photoreceptor cell morphogenesis, contains a repeat motif found in yeast and human. Cell 52 (1988) 291-301
38. Sakharov I., and Dzhunkovkaia A.V. Elastase from the hepatopancreas of the king crab. Biokhimia 58 (1993) 1445-1453
39. Sargent T.D., and Dawid I. Differential gene expression in the gastrula of Xenopus laevis. Science 222 (1983) 135-139
40. Senkbeil E.G., and Wriston J.C. Hemocyanin synthesis in the American lobster, Homarus americanus. Comp. Biochem. Physiol. 68B (1980) 163-171
41. Senkbeil E.G., and Wriston J.C. Catabolism of hemocyanin in the American lobster, Homarus americanus. Comp. Biochem. Physiol. 69B (1981) 781-790
42. Spiegelman B.M., Penningroth S.M., and Kirschner M.W. Turnover of tubulin and the N site GTP in Chinese hamster ovary cells. Cell 12 (1977) 587-600
43. Tartakoff A.M., and Jamieson J.D. Subcellular fractionation of the pancreas. Methods Enzymol. 31A (1974) 41-59
44. Thrower E.C., Diaz de Villavilla A.P., Kolodecik T.R., and Gorlick F.S. Zymogen activation in a reconstituted pancreatic acinar cell system. Am. J. Physiol. Gasterointest. Liver Physiol. 290 (2006) G894-G902
45. Tsu C.A., Perona J.J., Schellenberger V., Turck C.W., and Craik C.S. The substrate specificity of Uca pugilator collagenolytic serine protease 1 correlates with the bovine type I collagen cleavage sites. J. Biol. Chem. 269 (1994) 19565-19572
46. Vogt G. Monitoring of environmental pollutants such as pesticides in prawn aquaculture by histologic diagnosis. Aquaculture 67 (1987) 157-164
47. Vogt G., and Quinitio E.T. Accumulation and excretion of metal granules in the prawn, Penaeus monodon, exposed to water-borne copper, lead, iron and calcium. Aquat. Toxicol. 28 (1994) 223-241
48. Walker A.N., Bush P., Puritz J., Wilson T., Chang E.S., Miller T.E., Holloway K., and Horst M.N. Bioaccumulation and metabolic effects of the endocrine disruptor methoprene in the lobster, Homarus americanus. Integr. Comp. Biol. 45 (2005) 118-126
49. Walker A.N., Bush P., Wilson T., Chang E.S., Miller T.E., and Horst M.N. Metabolic effects of acute exposure to methoprene in the lobster, Homarus americanus. J. Shellfish Res. 24 (2005) 787-794
50. Warner A.H., Pullumbi E., Amons R., and Liu L. Characterization of a cathepsin l-associated protein in Artemia and its relationship to the FAS-I family of cell adhesion proteins. Eur. J. Biochem. 271 (2004) 4014-4025
51. Welchman R.L., Gordon C., and Mayer R.J. Ubiquitin and ubiquitin-like proteins as multifunctional signals. Nat. Rev., Mol. Cell Biol. 6 (2005) 599-609