Characterization, genetic structure, and pathogenicity of Rhizoctonia spp. associated with rice sheath diseases in India

Phytopathology

Volumn 97, Issue 3, 2007, Pages 373-383

  Taheri, Parissa ^a   Gnanamanickam, Sam ^b   Höfte, Monica ^a  

^a GHENT UNIVERSITY   (Belgium)

^b UNIVERSITY OF MADRAS   (India)

Author keywords

Ceratobasidium oryzae sativae; Genetic variability; rDNA ITS region; Thanatephorus cucumeris

Indexed keywords

CERATORHIZA ORYZAE-SATIVAE; HYPHOMYCETES; ORYZA SATIVA; RHIZOCTONIA; THANATEPHORUS CUCUMERIS;

EID: 33847377945     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-97-3-0373     Document Type: Article

References (47)

1. Anderson, J. B., and Kohn, L. M. 1995. Clonality in soilborne, plant-pathogenic fungi. Annu. Rev. Phytopathol. 33:369-391.
2. Banniza, S., and Rutherford, M. A. 2001. Diversity of isolates of Rhizoctonia solani AG-1 IA and their relationship to other anastomosis groups based on pectic zymograms and molecular analysis. Mycol. Res. 105:33-40.
3. Banniza, S., Sy, A. A., Bridge, P. D., Simons, S. A., and Holderness, M. 1999. Characterization of populations of Rhizoctonia solani in paddy rice fields in Cote d'Ivoire. Phytopathology 89:414-420.
4. Carling, D. E. 1996. Grouping in Rhizoctonia solani by hyphal anastomosis. Pages 37-47 in: Rhizoctonia Species: Taxonomy, Molecular Biology, Ecology, Pathology, and Disease Control. B. Sneh, S. Jabaji-Hare, S. Neate, and G. Dijst, eds. Kluwer Academic Publishers, Dordrecht, the Netherlands.
5. Ceresini, P. C., Shew, H. D., Vilgalys, R. J., and Cubeta, M. A. 2002. Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina. Mycologia 94:437-449.
6. Ceresini, P. C., Shew, H. D., Vilgalys, R., Gale, L. R., and Cubeta, M. A. 2003. Detecting migrants in populations of Rhizoctonia solani anastomosis group 3 from potato in North Carolina using multilocus genotype probabilities. Phytopathology 93:610-615.
7. Excoffier, L., Smouse, P. E., and Quattro, J. M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction sites. Genetics 131:479-491.
8. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
9. Gangopadhay, S., and Chakrabarti, N. K. 1982. Sheath blight on rice. Rev. Plant Pathol. 61:451-460.
10. Guillemaut, C., Herman, V. E., Camporota, P., Alabouvette, C., Molard, M. R., and Steinberg, C. 2003. Typing of anastomosis groups of Rhizoctonia solani by restriction analysis of ribosomal DNA. Can. J. Microbiol. 49:556-568.
11. Gunnell, P. S., and Webster, R. K. 1984. Aggregate sheath spot of rice in California. Plant Dis. 68:529-531.
12. Highton, R. 1993. The relationship between the number of loci and the statistical support for the topology of UPGMA trees obtained from genetic distance data. Mol. Phylog. Evol. 2:337-343.
13. Jaccard, P. 1908. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44:223-270.
14. Johanson, A., Turner, H. C., McKay, G. J., and Brown, A. E. 1998. A PCR-based method to distinguish fungi of the rice sheath-blight complex, Rhizoctonia solani, R. oryzae, and R. oryzae-sativae. FEMS Microbiol. Lett. 162:289-294.
15. Jones, R. K., and Belmar, S. B. 1989. Characterization and pathogenicity of Rhizoctonia spp. isolates from rice, soybean, and other crops grown in rotation with rice in Texas. Plant Dis. 73:1004-1010.
16. Kobayashi, T., Mew, T. W., and Hashiba, T. 1997. Relationship between incidence of rice sheath blight and primary inoculum in the Philippines: Mycelia in plant debris and sclerotia. Ann. Phytopathol. Soc. Jpn. 63:324-327.
17. Lance, G. N., and Williams, W. T. 1967. A general theory of classificatory sorting strategies. I. Hierarchical systems. Computer J. 9:373-380.
18. Linde, C. C., Zala, M., Paulraj, R. S. D., McDonald, B. A., and Gnanamanickam, S. 2005. Population structure of the rice sheath blight pathogen Rhizoctonia solani AG-IIA from India. Eur. J. Plant Pathol. 112:113-121.
19. Liu, Z. L., and Sinclair, J. B. 1993. Differentiation of intraspecific groups within anastomosis group 1 of Rhizoctonia solani using ribosomal DNA internal transcribed spacer and isozyme comparison. Can. J. Plant Pathol. 15:272-280.
20. Lynch, M., and Milligan, B. 1994. Analysis of population genetic structure with RAPD markers. Mol. Ecol. 3:91-99.
21. Mantel, N. A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
22. Marshall, D. S., and Rush, M. C. 1980. Relation between infection by Rhizoctonia solani and R. oryzae and disease severity in rice. Phytopathology 70:941-946.
23. Martin, S. B., and Lucas, L. T. 1984. Characterization and pathogenicity of Rhizoctonia spp. and binucleate Rhizoctonia-like fungi from turfgrasses in North Carolina. Phytopathology 74:170-175.
24. Matsuyama, N., Moromizato, Z., Ogoshi, A., and Wakimoto, S. 1978. Grouping Rhizoctonia solani with non-specific esterase zymogram. Ann. Phytopathol. Soc. Jpn. 44:652-658.
25. Mohammadi, M., Banihashemi, M., Hedjaroude, G. A., and Rahimian, H. 2003. Genetic diversity among Iranian isolates of Rhizoctonia solani anastomosis group 1 subgroups based on isozyme analysis and total soluble protein pattern. J. Phytopathol. 151:162-170.
26. Muller, U. G., and Wolfenbarger, L. L. 1999. AFLP genotyping and fingerprinting. Trends Ecol. Evol. 14:389-394.
27. Neeraja, C. N., Shenoy, V. V., Reddy, C. S., and Sarma, N. P. 2002. Isozyme polymorphism and virulence of Indian isolates of the rice sheath blight fungus. Mycopathologia 159:101-108.
28. Neeraja, C. N., Vijayabhanu, N., Shenoy, V. V., Reddy, C. S., and Sarma, N. P. 2002. RAPD analysis of Indian isolates of rice sheath blight fungus Rhizoctonia solani. J. Plant Biochem. Biotech. 11:43-48.
29. Nei, M., and Li, W. H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5267-5273.
30. Ogoshi, A. 1987. Ecology and pathogenicity of anastomosis and intraspecific groups of Rhizoctonia solani. Ann. Rev. Phytopathol. 25:125-143.
31. Rodrigues, F. A., Datnoff, L. E., Korndorfer, G. H., Seebold, K. W., and Rush, M. C. 2001. Effect of silicon and host resistance on sheath blight development in rice. Plant Dis. 85:827-832.
32. Rodrigues, F. A., Vale, F. X. R., Datnoff, L. E., Prabhu, A. S., and Korndorfer, G. H. 2003. Effect of rice growth stages and silicon on sheath blight development. Phytopathology 93:256-261.
33. Rogers, S. O., and Rogers, M. A. M. 1999. Gene flow in fungi. Pages 97-121 in: Structure and Dynamics of Fungal Populations. J. J. Worrall, ed. Kluwer Academic Publishers, Dordrecht, the Netherlands.
34. Rosewich, U. L., Pettway, R. E., McDonald, B. A., and Kistler, H. C. 1999. High levels of gene flow and heterozygote excess characterize Rhizoctonia solani AG-1 IA (Thanatephorus cucumeris) from Texas. Fungal Genet. Biol. 28:148-159.
35. Savary, S., Castilla, N. P., Elazegui, F. A., McLaren, C. G., Ynalvez, M. A., and Teng, P. S. 1995. Direct and indirect effects of nitrogen supply and disease source structure on rice sheath blight spread. Phytopathology 85:959-965.
36. Schneider, S. Roessli, D., and Excoffier, L. 2000. Arlequin: A software for population genetics data analysis, version 2.0. Univ. Geneva, Switzerland.
37. Sharma, N. R., Teng, P. S., and Olivares, F. M. 1990. Comparison of assessment methods for rice sheath blight disease. Phillipp. Phytopathol. 26:20-24.
38. Sherwood, R. T., 1969. Morphology and physiology in four an-astomosis groups of Thanatephorus cucumeris. Phytopathology 59:1924-1929.
39. Shew, H. D. 1985. Rhizoctonia leaf spot of flue-cured tobacco in North Carolina. Plant Dis. 69:901-903.
40. Sneath, P. H., and Sokal, R. R. 1973. Numerical Taxonomy. W. H. Freeman and Co., San Francisco.
41. Sneh, B., Burpee, L., and Ogoshi, A. 1991. Identification of Rhizoctonia Species. The American Phytopathological Society, St. Paul, MN.
42. Sokal, R. R., and Michener, C. D. 1958. A statistical method for evaluating systematic relationships. Univ. Kan. Sci. Bull. 38:1409-1438.
43. Stevens Johnk, J., and Jones, R. K. 1994. Comparison of whole-cell fatty acid compositions in intra-specific groups of Rhizoctonia solani AG-1. Phytopathology 84:271-275.
44. Vijayan, M., and Nair, C. M. 1985. Anastomosis group of iso-lates of Rhizoctonia solani (Thanatephorus cucumeris) caus-ing sheath blight of rice. Curr. Sci. 54:289-291.
45. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., and Zebeau, M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
46. Zolan, M., and Pukkila, P. 1986. Inheritance of DNA methylation in Coprinus cinereus. Mol. Cell. Biol. 6:195-200.
47. Zuber, M., and Manibhushanrao, K. 1982. Studies on comparative gel electrophoretic patterns of proteins and enzymes from isolates of Rhizoctonia solani causing sheathblight disease in rice. Can. J. Microbiol. 28:762-771.