Profiling of PLFA: Implications for nonlinear spatial gradient of PCP degradation in the vicinity of Lolium perenne L. roots

Soil Biology and Biochemistry

Volumn 39, Issue 5, 2007, Pages 1121-1129

  He, Yan ^a   Xu, Jianming ^a   Ma, Zhaohui ^a   Wang, Haizhen ^a   Wu, Yuping ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Degradation gradient; Microbial community; Pentachlorophenol (PCP); Phospholipid fatty acids (PLFAS)

Indexed keywords

BACTERIA; BIODEGRADATION; BIOMARKERS; PHOSPHOLIPIDS; PLANTS (BOTANY); SOILS;

DEGRADATION GRADIENT; MICROBIAL COMMUNITY; PENTACHLOROPHENOL (PCP); PHOSPHOLIPID FATTY ACIDS (PLFAS);

FATTY ACIDS;

FATTY ACID; GRASS; MICROBIAL COMMUNITY; PCP; PHOSPHOLIPID; RHIZOSPHERE;

BACTERIA; BIODEGRADATION; FATTY ACIDS; LIPIDS; RHIZOSPHERES; ROOTS; SOIL;

LOLIUM PERENNE;

EID: 33847357787     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2006.11.023     Document Type: Article

References (34)

1. Anderson T.A., and Coats J.R. Bioremediation Through Rhizosphere Technology (1994), American Chemical Society, Washington pp. 93-99
2. Anderson T.A., Gunthrie E.A., and Walton B.T. Bioremediation in the rhizosphere. Environment Science and Technology 27 (1993) 2630-2636
3. Bossio D.A., Scow K.M., Gunapala N., and Graham K.J. Determinants of soil microbial communities: effects of agricultural management, season and soil type on phospholipid fatty acid profiles. Microbial Ecology 36 (1998) 1-12
4. Brennan P.J. Mycobacterium and other actinomycetes. In: Ratledge C., and Wilkinson S.G. (Eds). Microbial Lipids vol. 1 (1988), Academic Press, London 203-298
5. Chen S.H., and Aitken M.D. Salicylate stimulates the degradation of high-molecular weight polycyclic aromatic hydrocarbons by Pseudomonas saccharophila P15. Environmental Science and Technology 33 (1999) 435-439
6. Frostegård A., and Bååth E. The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biology and Fertility of Soils 22 (1996) 59-65
7. Frostegård A., Tunlid A., and Bååth E. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 59 (1993) 3605-3617
8. He Y., Xu J.M., Tang C.X., and Wu Y.P. Facilitation of pentachlorophenol degradation in the rhizosphere of ryegrass (Lolium perenne L.). Soil Biology & Biochemistry 37 (2005) 2017-2024
9. He, Y., Xu, J.M., Wang, H.Z., Wu, Y.P., 2007. Generalized models for prediction of pentachlorophenol dissipation dynamics in soils. Environmental Pollution, in press, doi:10.1016/j.envpol.2006.05.026.
10. Joner E.J., Magid J., Gahoonia T.S., and Jakobsen I. P depletion and activity of phosphatases in the rhizosphere of mycorrhizal and non-mycorrhizal cucumber (Cucumis sativus L.). Soil Biology & Biochemistry 27 (1995) 1145-1151
11. Kroppenstedt R.M. Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M., and Minnikin D.E. (Eds). Chemical Methods in Bacterial Systematics (1985), Academic Press, London 173-199
12. Kroppenstedt R.M., and Kutzner H.J. Biochemical taxonomy of some problem actinomycetes. In: Mordarski M., Kurylowicz W., and Jeljaszewicz J. (Eds). Proceedings of the International Symposium on Nocardia and Streptomyces (1978), Gustav Fischer Verlag, Stuttgart 125-133
13. Marschner P., Crowley D.E., and Lieberei R. Arbuscular mycorrhizal infection changes the bacterial 16S rDNA community composition in the rhizosphere of maize. Mycorrhiza 11 (2001) 297-302
14. Meguar F., and Gantar M. Perspectives in Microbial Biology (1986), Slovene Society of Microbiology, Ljubljana, Slovenia pp. 493-498
15. Meharg A.A., and Cairney J.W.G. Ectomycorrhizas-extending the capabilities of rhizosphere remediation?. Soil Biology & Biochemistry 32 (2000) 1475-1484
16. Nielsen P., and Petersen S.O. Ester-linked polar lipid fatty acid profiles of soil microbial communities: a comparison of extraction methods and evaluation of interference from humic acids. Soil Biology & Biochemistry 32 (2000) 1241-1249
17. O'Leary W.M., and Wilkinson S.G. Gram-positive bacteria. In: Ratledge C., and Wilkinson S.G. (Eds). Microbial Lipids vol. 1 (1988), Academic Press, London 117-201
18. Olsson P.A., Bååth E., Jakobsen I., and Söderström B. The use of phospholipid and neutral lipid fatty acids to estimate biomass of arbuscular mycorrhizal fungi in soil. Mycological Research 99 (1995) 623-629
19. Olsson P.A., Bååth E., Jakobsen I., and Söderström B. Soil bacteria respond to presence of roots but not to mycelium of arbuscular mycorrhizal fungi. Soil Biology & Biochemistry 28 (1996) 463-470
20. Olsson P.A., Tingstrup I., Jakobsen I., and Bååth E. Estimation of the biomass of arbuscular mycorrhizal fungi in a linseed field. Soil Biology & Biochemistry 31 (1999) 1879-1887
21. Pennanen T., Frostegård A., Fritze H., and Bååth E. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal polluted gradients in coniferous forests. Applied and Environmental Microbiology 62 (1996) 420-428
22. Petersen S.O., and Klug M.J. Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community. Applied and Environmental Microbiology 60 (1994) 2421-2430
23. Roehrig S.F. Probabilistic inference and path analysis. Decision Support Systems 16 (1996) 55-66
24. Rogers J.B., Scott Laidlaw A., and Christie P. The role of arbuscular mycorrhizal fungi in the transfer of nutrients between white clover and perennial ryegrass. Chemosphere 42 (2001) 153-159
25. Rovira A.D., and Davey C.B. Biology of the rhizosphere. In: Carson E.W. (Ed). The Plant Root and its Environment (1974), University Press of Virginia, Charlottesville 153-204
26. Salzer P., Corbière H., and Boller T. Hydrogen peroxide accumulation in Medicago truncatula roots colonized by the arbuscular mycorrhiza-forming fungus Glomus intraradices. Planta 208 (1999) 319-325
27. Sundh I., Nilsson M., and BorgaÊ P. Variation in microbial community structure in two boreal peatlands as determined by analysis of phospholipid fatty acid profiles. Applied and Environmental Microbiology 63 (1997) 1476-1482
28. Vance E.D., Brookes P.C., and Jenkinson D.S. An extraction method for measuring microbial biomass carbon. Soil Biology & Biochemistry 19 (1987) 253-258
29. White D.C., and Macnaughton S.J. Chemical and molecular approaches for rapid assessment of the biological status of soils. In: Pankhurst C., Doube B.M., and Gupta V.V.S.R. (Eds). Biological Indicators of Soil Health (1997), CAB International, Wallingford, UK 371-396
30. Wilkinson S.G. Gram-negative bacteria. In: Ratledge C., and Wilkinson S.G. (Eds). Microbial Lipids Vol. 1 (1988), Academic Press, London 299-488
31. Wu J., Joergensen R.G., Pommerening B., and Brookes P.C. Measurement of soil microbial biomass carbon by fumigation-extraction, an automated procedure. Soil Biology & Biochemistry 22 (1990) 1167-1169
32. Yao H., He Z., Wilson M.J., and Campbell C.D. Microbial biomass and community structure in a sequence of soils with increasing fertility and changing land use. Microbial Ecology 40 (2000) 223-237
33. Yedidia I., Benhamou N., and Chet I. Induction of defense responses in cucumber plants (Cucumis sativus L.) by the biocontrol agent Trichoderma harzianum. Applied and Environmental Microbiology 65 (1999) 1061-1070
34. Zheng Y., and Zhang F.S. Effect of soil moisture on release of low molecular weight organic acids in root exudates and the accumulation of iron in root apoplasm of peanut. Pedosphere 10 (2000) 333-338