Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain

Nucleic Acids Research

Volumn 35, Issue 3, 2007, Pages 812-821

  Mendiratta, Geetu ^a   Eriksson, Peter R ^a   Clark, David J ^a  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMER; DNA BINDING PROTEIN; HISTONE ACETYLTRANSFERASE; MONOMER; SPT10 PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DIMERIZATION; DNA BINDING; GENE SEQUENCE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; YEAST;

BINDING SITES; DIMERIZATION; HISTONES; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

EID: 33847345996     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl1079     Document Type: Article

References (31)

1. Fassler,J.S. and Winston,F. (1988) Isolation and analysis of a novel class of suppressor of Ty insertion mutations in Saccharomyces cerevisiae. Genetics, 118, 203-212.
2. Natsoulis,G., Dollard,F., Winston,F. and Boeke,J.D. (1991) The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci. New Biol., 3, 1249-1259.
3. Natsoulis,G., Winston,F. and Boeke,J.D. (1994) The SPT10 and SPT21 genes of Saccharomyces cerevisiae. Genetics, 136, 93-105.
4. Grant,P.A., Sterner,D.E., Duggan,L.J., Workman,J.L. and Berger,S.L. (1998) The SAGA unfolds: Convergence of transcription regulators in chromatin-modifying complexes. Trends Cell Biol., 8, 193-197.
5. Winston,F. and Sudarsanam,P. (1998) The SAGA of Spt proteins and transcriptional analysis in yeast: Past, present and future. Cold Spring Harb. Symp., 63, 553-561.
6. Yamaguchi,Y., Narita,T., Inukai,N., Wada,T. and Handa,H. (2001) SPT genes: Key players in the regulation of transcription, chromatin structure and other cellular processes. J. Biochem., 129, 185-191.
7. Yamashita,I. (1993) Isolation and characterisation of the SUD1 gene, which encodes a global repressor of core promoter activity in Saccharomyces cerevisiae. Mol. Gen. Genet., 241, 616-626.
8. Hess,D., Liu,B., Roan,N.R., Sternglanz,R. and Winston,F. (2004) Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 histone acetyltransferase domain and Spt21. Mol. Cell. Biol., 24, 135-143.
9. Hess,D. and Winston,F. (2005) Evidence that Spt10 and Spt21 of S.cerevisiae play distinct roles in vivo and functionally interact with MCB-binding factor, SCB-binding factor and Snf1. Genetics, 170, 87-94.
10. Sherwood,P.W. and Osley,M.A. (1991) Histone regulatory (Hir) mutations suppress δ insertion alleles in Saccharomyces cerevisiae. Genetics, 128, 729-738.
11. Osley,M.A. (1991) The regulation of histone synthesis in the cell cycle. Ann. Rev. Biochem., 60, 827-861.
12. Eriksson,P.R., Mendiratta,G., McLaughlin,N.B., Wolfsberg,T.G., Mariño-Ramírez,L., Pompa,T.A., Jainerin,M., Landsman,D., Shen,C.-H. and Clark,D.J. (2005) Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. Mol. Cell. Biol., 25, 9127-9137.
13. Mendiratta,G., Eriksson,P.R., Shen,C.-H. and Clark,D.J. (2006) The DNA-binding domain of the yeast Spt10p activator includes a zinc finger that is homologous to foamy virus integrase. J. Biol. Chem., 281, 7040-7048.
14. Neuwald,A.F. and Landsman,D. (1997) GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein. Trends Biochem. Sci., 22, 154-155.
15. Sutton,A., Shia,W.J., Band,D., Kaufman,P.D., Osada,S., Workman,J.L. and Sternglanz,R. (2003) Sas4 and Sas5 are required for the histone acetyltransferase activity of Sas2 in the SAS complex. J. Biol. Chem., 278, 16887-16892.
16. Shen,C.-H., Leblanc,B.P., Neal,C., Akhavan,R. and Clark,D.J. (2002) Targeted histone acetylation at the yeast CUP1 promoter requires the transcriptional activator, the TATA boxes and the putative histone acetylase encoded by SPT10. Mol. Cell. Biol., 22, 6406-6416.
17. Xu,F., Zhang,K. and Grunstein,M. (2005) Acetylation in histone H3 globular domain regulates gene expression in yeast. Cell, 121, 375-385.
18. Kawasaki,H., Schiltz,L., Chiu,R., Itakura,K., Taira,K., Nakatani,Y. and Yokoyama,K.K. (2000) ATF-2 has intrinsic histone acetyltransferase activity which is modulated by phosphorylation. Nature, 405, 195-200.
19. Osley,M.A., Gould,J., Kim,S., Kane,M. and Hereford,L. (1986) Identification of sequences in a yeast histone promoter involved in periodic transcription. Cell, 45, 537-544.
20. Freeman,K.B., Karns,L.R., Lutz,K.A. and Smith,M.M. (1992) Histone H3 transcription in Saccharomyces cerevisiae is controlled by multiple cell cycle activation sites and a constitutive negative regulatory element. Mol. Cell. Biol., 12, 5455-5463.
21. Dimova,D., Nackerdien,Z., Furgeson,S., Eguchi,S. and Osley,M.A. (1999) A role for transcriptional repressors in targeting the yeast SWI/SNF complex. Mol. Cell, 4, 75-83.
22. Green,E.M., Antczak,A.J., Bailey,A.O., Franco,A.A., Wu,K.J., Yates,J.R. and Kaufman,P.D. (2005) Replication-independent histone deposition by the HIR complex and Asf1. Curr. Biol., 15, 2044-2049.
23. Prochasson,P., Florens,L., Swanson,S.K., Washburn,M.P. and Workman,J.L. (2005) The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. Genes Dev., 19, 2534-2539.
24. Carrasco,B., Garcia de la Torre,J., Byron,O., King,D., Walters,C., Jones,S. and Harding,S.E. (1999) Novel size-independent modeling of the dilute solution conformation of the immunoglobulin IgG Fab' domain using SOLPRO and ELLIPS. Biophys. J., 77, 2902-2910.
25. Orsini,G. and Goldberg,M.E. (1978) The renaturation of reduced chymotrypsinogen A in guanidine HCl. Refolding versus renaturation. J. Biol. Chem., 253, 3453-3458.
26. Maass,D.R. and Atkinson,P.H. (1990) Rotavirus proteins VP7, NS28, and VP4 form oligomeric structures. J. Virol., 64, 2632-2641.
27. Bresnick,E.H. and Felsenfeld,G. (1994) The leucine zipper is necessary for stabilising a dimer of the helix-loop-helix transcription factor USF but not for maintenance of an elongated conformation. J. Biol. Chem., 269, 21110-21116.
28. Harpaz,Y., Gerstein,M. and Chothia,C. (1994) Volume changes on protein folding. Structure, 2, 641-649.
29. Tinoco,I., Sauer,K. and Wang,J.C. (1985) Physical Chemistry, 2nd edn. Prentice-Hall, NJ.
30. Trainor,C.D., Ghirlando,R. and Simpson,M.A. (2000) GATA zinc finger interactions modulate DNA binding and transactivation. J. Biol. Chem., 275, 28157-28166.
31. Ghirlando,R. and Trainor,C.D. (2003) Determinants of GATA-1 binding to DNA. The role of non-finger residues. J. Biol. Chem., 278, 45620-45628.