An atlas-based method to compensate for brain shift: Preliminary results

Medical Image Analysis

Volumn 11, Issue 2, 2007, Pages 128-145

  Dumpuri, Prashanth ^a   Thompson, Reid C ^b   Dawant, Benoit M ^a   Cao, A ^a   Miga, Michael I ^a  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Brain shift; Finite elements; Image guided surgery; Inverse model; Sparse data

Indexed keywords

BRAIN; COMPUTER SIMULATION; FINITE ELEMENT METHOD; MATHEMATICAL MODELS; NEUROSURGERY;

BRAIN SHIFT; IMAGE-GUIDED SURGERY; INVERSE MODEL; SPARSE DATA;

MEDICAL IMAGING;

MANNITOL;

ADULT; AGED; ANALYTICAL ERROR; ARTICLE; BRAIN EDEMA; BRAIN SIZE; BRAIN TUMOR; CASE REPORT; COMPUTER ASSISTED TOMOGRAPHY; COMPUTER PROGRAM; CONTROLLED STUDY; FINITE ELEMENT ANALYSIS; HUMAN; IN VIVO STUDY; INTRAOPERATIVE PERIOD; LINEAR SYSTEM; MALE; MATHEMATICAL COMPUTING; NEUROIMAGING; NEUROSURGERY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PHANTOM; PREDICTION; PREOPERATIVE EVALUATION; PRIORITY JOURNAL; SIMULATION;

ADULT; AGED; ANATOMY, ARTISTIC; BRAIN; COMPUTER SIMULATION; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MALE; MEDICAL ILLUSTRATION; MODELS, STATISTICAL; PHANTOMS, IMAGING;

EID: 33847345529     PISSN: 13618415     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.media.2006.11.002     Document Type: Article

References (47)

1. Balay S., Eijkhout V., Gropp W.D., McInnes L.C., and Smith B.F. Efficient management of parallelism in object oriented numerical software libraries. In: Arge E., Bruaset A.M., and Langtangen H.P. (Eds). Modern Software Tools in Scientific Computing (1997), Birkha User Press 163-202
2. Balay, S., Buschelman, K., Gropp, W.D., Kaushik, D., Knepley, M.G., McInnes, L.C., Smith, B.F., Zhang, H., 2001. Petsc web page, http://www.mcs.anl.gov/petsc.
3. Balay, S., Buschelman, K., Eijkhout, V., Gropp, W.D., Kaushik, D., Knepley, M.G., McInnes, L.C., Smith, B.F., Zhang, H., 2004. Petsc users manual, Tech. Rep. ANL-95/11 - Revision 2.3.0, Argonne National Laboratory.
4. Biot M. General theory of three-dimensional consolidation. J. Appl. Phys. 12 (1941) 155-164
5. Butler W.E., Piaggio C.M., Constantinou C., Niklason L., Gonzalez R.G., Cosgrove G.R., and Zervas N.T. A mobile computed tomographic scanner with intraoperative and intensive care unit applications. Neurosurgery 42 6 (1998) 1304-1310
6. Dorward N.L., Alberti O., Velani B., Gerritsen F.A., Harkness W.F.J., Kitchen N.D., and Thomas D.G.T. Postimaging brain distortion: magnitude correlates, and impact on neuronavigation. Journal of Neurosurgery 88 4 (1998) 656-662
7. Dumpuri P., Chen R., and Miga M. Model updated image guidance: a statistical approach to gravity induced brain shift. Lecture Notes in Computer Science: Medical Image Computing and Computer-Assisted Intervention 2879 1 (2003) 375-382
8. Edwards P.J., Hill D.L., Little J.A., and Hawkes D.J. A three-component deformation model for image-guided surgery. Medical Image Analysis 2 4 (1998) 355-367
9. Ferrant M., Nabavi A., Macq B., Jolesz F.A., Kikinis R., and Warfield S.K. Registration of 3-d intraoperative mr images of the brain using a finite-element biomechanical model. IEEE Transactions on Medical Imaging 20 12 (2001) 1384-1397
10. Ferrant M., Nabavi A., Macq B., Jolesz F.A., Kikinis R., and Warfield S.K. Serial registration of intraoperative mr images of the brain. Medical Image Analysis 6 (2002) 337-359
11. Hagemann A., Rohr K., Stiehl H.S., Spetzger U., and Gilsbach J.M. Biomechanical modeling of the human head for physically based, nonrigid image registration. IEEE Transactions on Medical Imaging 18 10 (1999) 875-884
12. Hartkens T., Hill D.L.G., Castellano-Smith A.D., Hawkes D.J., Maurer C.R., Martin A.J., Hall W.A., Liu H., and Truwit C.L. Measurement and analysis of brain deformation during neurosurgery. IEEE Transactions on Medical Imaging 22 1 (2003) 82-92
13. Letteboer M.J., Willems P., Viergever M.A., and Niessen W.J. Brain shift estimation in image-guided neurosurgery using 3-d ultrasound. IEEE Transactions on Biomedical Engineering 52 2 (2005) 268-276
14. Lorensen W., and Cline H. Marching cubes: a high resolution 3d surface construction algorithm. ACM Computer Graphics 21 4 (1987) 163-169
15. Lunn K.E., Hartov A., Hansen E., Sun H., Roberts D., and Paulsen K. A quantitative comparison of edges in 3d intraoperative ultrasound and preoperative mr images of the brain. Lecture Notes in Computer Science: Medical Image Computing and Computer-Assisted Intervention 2208 (2001) 1081-1090
16. Lunn K., Paulsen K., Lynch D.R., Roberts D.W., Kennedy F.E., and Hartov A. Assimilating intraoperative data with brain shift modeling using the adjoint equations. Medical Image Analysis 9 (2005) 281-293
17. In: Lynch D.R. (Ed). Numerical Partial Differential Equations for Environmental Scientists and Engineers (2004), Springer
18. Miga, M.I., 1998. Development and quantification of a 3d brain deformation model for model-updated image-guided stereotactic neurosurgery, Ph.D. thesis, Thayer School of Engineering, Dartmouth College.
19. Miga M.I., Paulsen K.D., Kennedy F.E., Hoopes P.J., Hartov A., and Roberts D.W. Initial in-vivo analysis of 3d heterogeneous brain computations for model-updated image-guided neurosurgery. Medical Image Computing and Computer-Assisted Intervention - Miccai'98. Lecture Notes in Computer Science vol. 1496 (1998), Springer-Verlag 743-752
20. Miga M.I., Paulsen K.D., Lemery J.M., Eisner S.D., Hartov A., Kennedy F.E., and Roberts D.W. Model-updated image guidance: initial clinical experiences with gravity-induced brain deformation. IEEE Transactions on Medical Imaging 18 10 (1999) 866-874
21. Miga M., Paulsen K., Kennedy F., Hartov A., and Roberts D. Model-updated image-guided neurosurgery using the finite element method: incorporation of the falx cerebri. In: Colchester T.A. (Ed). Lecture Notes in Computer Science for 2nd International Conference on Medical Image Computing and Computer-Assisted Intervention vol. 1679 (1999), Springer-Verlag, New York 900-909
22. Miga M.I., Paulsen K.D., Hoopes P.J., Kennedy F.E., Hartov A., and Roberts D.W. In vivo quantification of a homogeneous brain deformation model for updating preoperative images during surgery. IEEE Transactions on Biomedical Engineering 47 2 (2000) 266-273
23. Miga M.I., Paulsen K.D., Hoopes P.J., Kennedy F.E., Hartov A., and Roberts D.W. In vivo modeling of interstitial pressure in the brain under surgical load using finite elements. Journal of Biomechanical Engineering-Transactions of the Asme 122 4 (2000) 354-363
24. Miga M.I., Roberts D.W., Kennedy F.E., Platenik L.A., Hartov A., Lunn K.E., and Paulsen K.D. Modeling of retraction and resection for intraoperative updating of images. Neurosurgery 49 1 (2001) 75-84
25. Miga M.I., Fitzpatrick J.M., Galloway Jr. R.L., and Paulsen K.D. Incorporation of surface-based deformations for updating images intraoperatively. Medical Imaging 2001: Visualization, Display, and Image-guided Procedures 2 24 (2001) 169-178
26. Miga M.I., Sinha T.K., Cash D.M., Galloway R.L., and Weil R.J. Cortical surface registration for image-guided neurosurgery using laser range scanning. IEEE Transactions on Medical Imaging 22 8 (2003) 973-985
27. Miller K. Constitutive model of brain tissue suitable for finite element analysis of surgical procedures. Journal of Biomechanics 32 5 (1999) 531-537
28. Nabavi A., Black P.M., Gering D.T., Westin C.F., Mehta V., Pergolizzi R.S., Ferrant M., Warfield S.K., Hata N., Schwartz R.B., Wells W.M., Kikinis R., and Jolesz F.A. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery 48 4 (2001) 787-797
29. Nagashima T., Shirakuni T., and Rapoport I. A two-dimensional finite element analysis of vasogenic brain edema. Neurologia Medico-Chirurgica 30 (1990) 1-9
30. Nauta H.J. Error assessment during "image guided" and "imaging interactive" stereotactic surgery. Computerized Medical Imaging and Graphics 18 4 (1994) 279-287
31. Nimsky C., Ganslandt O., Cerny S., Hastreiter P., Greiner G., and Fahlbusch R. Quantification of visualization of and compensation for brain shift using intraoperative magnetic resonance imaging. Neurosurgery 47 5 (2000) 1070-1079
32. Nimsky C., Ganslandt O., Hastreiter P., and Fahlbusch R. Intraoperative compensation for brain shift. Surgical Neurology 56 6 (2001) 357-364
33. Paulsen K.D., Miga M.I., Kennedy F.E., Hoopes P.J., Hartov A., and Roberts D.W. A computational model for tracking subsurface tissue deformation during stereotactic neurosurgery. IEEE Transactions on Biomedical Engineering 46 2 (1999) 213-225
34. Platenik L.A., Miga M.I., Roberts D., Lunn K.E., Kennedy F.E., Hartov A., and Paulsen K.D. In vivo quantification of retraction deformation modeling for updated image-guidance during neurosurgery. IEEE Transactions on Biomedical Engineering 49 8 (2002) 823-835
35. Reulen H.J., Graham R., and Klatzo I. Role of pressure gradients and bulk flow in dynamics of vasogenic brain edema. Journal of Neurosurgery 46 (1977) 24-35
36. Roberts D.W., Hartov A., Kennedy F.E., Miga M.I., and Paulsen K.D. Intraoperative brain shift and deformation: a quantitative analysis of cortical displacement in 28 cases. Neurosurgery 43 4 (1998) 749-758
37. Roberts D.W., Miga M.I., Hartov A., Eisner S., Lemery J.M., Kennedy F.E., and Paulsen K.D. Intraoperatively updated neuroimaging using brain modeling and sparse data. Neurosurgery 45 5 (1999) 1199-1206
38. Rubino, G.J., Lycettel, C., Farahani, K., McGill, D., Van de Wiele, B., Villablanca, J.P., 2000. Interventional magnetic resonance imaging guided neurosurgery - the ucla experience with the first 100 cases, Tech. Rep. ElectoMedica Neuro, Siemens HealthCare Systems.
39. Sinha, T.K., 2005. Cortical shift characterization using a laser range scanner for neurosurgery, Ph.D. thesis, Vanderbilt University.
40. Sinha T.K., Dawant B.M., Duay V., Cash D.M., Weil R.J., and Miga M.I. A method to track cortical surface deformations using a laser range scanner. IEEE Transactions on Medical Imaging 24 6 (2005) 767-781
41. Sinha T.K., Miga M.I., Cash D.M., and Weil R.J. Intraoperative cortical surface characterization using laser range scanning: preliminary results. Neurosurgery 59 4 (2006) 368-377
42. Skrinjar O., Nabavi A., and Duncan J. Model-driven brain shift compensation. Medical Image Analysis 6 4 (2002) 361-373
43. Sullivan J., Charron G., and Paulsen K. A three-dimensional mesh generator for arbitrary multiple material domains. Finite Elements in Analysis and Design 25 3-4 (1997) 219-241
44. Sun H., Farid H., Rick K., Hartov A., Roberts D.W., and Paulsen K.D. Estimating cortical surface motion using steropsis for brain deformation models. LNCS: Medical Image Computing and Computer Assisted Intervention: MICCAI '03 vol. 2878 (2003), Springer-Verlag 794-801
45. Sun H., Roberts D.W., Farid H., Wu Z., Hartov A., and Paulsen K.D. Cortical surface tracking using a stereoscopic operating microscope. Neurosurgery 56-1 (2005) 86-97
46. Warfield S., Talos F., Tei A., Bharatha A., Nabavi A., Ferrant M., Black P., Jolesz F.A., and Kikinis R. Real-time registration of volumetric brain mri by biomechanical simulation of deformation during image guided neurosurgery. Computing and Visualization in Science 5 1 (2002) 3-11
47. Wittek A., Kikinis R., Warfield S.K., and Miller K. Brain shift computation using a fully nonlinear biomechanical model. Lecture Notes in Computer Science (2005) 583-590