Mclip: Motif detection based on cliques of gapped local profile-to-profile alignments

Bioinformatics

Volumn 23, Issue 4, 2007, Pages 502-503

  Frickey, Tancred ^a   Weiller, Georg ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; INTERNET; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; SCORING SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

EID: 33847292770     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl601     Document Type: Article

References (6)

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2. Hughes,J.D. et al. (2000) Computational identification of cis-regulatory elements associated with functionally coherent groups of genes in Saccharornyccs cerevisiae. J. Mol. Biol., 296, 1205-1214.
3. Matys,V. et al. (2003) Tranfac: Transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
4. Pavesi,C.L. et al. (2001) An algorithm for finding signals of unknown length in DNA sequences. Bioinformatics, 17, S207-S214.
5. Sadreyev,R. and Grishin,N. (2003) COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance. J. Mol. Biol., 326, 317-336.
6. Tharakaraman,K. et al. (2005) Alignments anchored on genomic landmarks can aid the identification of regulatory elements. Bioinformatics, 21, i440-i448.