Genetic characterisation of African swine fever viruses from outbreaks in southern Africa (1973-1999)

Veterinary Microbiology

Volumn 121, Issue 1-2, 2007, Pages 45-55

  Boshoff, C I ^a,b   Bastos, A D S ^a,c   Gerber, L J ^b   Vosloo, W ^a,c  

^a ARC OVI   (South Africa)

^b TSHWANE UNIVERSITY OF TECHNOLOGY   (South Africa)

^c UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

African swine fever; CVR; Epidemiology; p72 genotypes

Indexed keywords

PROTEIN P72;

AFRICA; AFRICAN SWINE FEVER VIRUS; ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; CENTRAL VARIABLE REGION; DOMESTIC PIG; GENE SEQUENCE; GENETIC ANALYSIS; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; P72 GENE; POPULATION MIGRATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SWINE DISEASE; VIRUS CHARACTERIZATION; VIRUS GENE;

AFRICA, SOUTHERN; AFRICAN SWINE FEVER; AFRICAN SWINE FEVER VIRUS; ANIMALS; BASE SEQUENCE; DISEASE OUTBREAKS; DNA, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; POLYMERASE CHAIN REACTION; RETROSPECTIVE STUDIES; SEQUENCE ALIGNMENT; SWINE; VARIATION (GENETICS);

AFRICAN SWINE FEVER VIRUS; ANIMALIA; SUIDAE; SUS SCROFA DOMESTICA;

EID: 33847278438     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2006.11.007     Document Type: Article

References (26)

1. Anderson E.C., Hutchings G.H., Mukarati N., and Wilkinson P.J. African swine fever virus infection of the bushpig (Potamochoerus porcus) and its significance in the epidemiology of the disease. Vet. Microbiol. 62 (1998) 1-15
2. Bastos A.D.S., Penrith M.-L., Crucière C., Edrich J.L., Hutchings G., Roger F., Couacy-Hymann E., and Thomson G.R. Genotyping field strains of African swine fever virus by partial p72 gene characterization. Arch. Virol. 148 (2003) 693-706
3. Bastos A.D., Penrith M.L., Macome F., Pinto F., and Thomson G.R. Co-circulation of two genetically distinct viruses in an outbreak of African swine fever in Mozambique: no evidence for individual co-infection. Vet. Microbiol. 103 (2004) 169-182
4. Blasco R., Aguero M., Almendral J.M., and Viñuela E. Variable and constant regions in African swine fever virus DNA. Virology 168 (1989) 330-338
5. Dixon L.K., and Wilkinson P.J. Genetic diversity of African swine fever isolates from soft ticks (Ornithodoros moubata) inhabiting warthog burrows in Zambia. J. Gen. Virol. 69 (1988) 2981-2993
6. Dixon L.K., Costa J.V., Escribano J.M., Rock D.L., Viñuela E., and Wilkinson P.J. Family Asfarviridae. In: Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carestens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., Wickner R.B.F.A., Murphy C.M., Fauquet D.H.L., Bishop S.A., Ghabrial A.W., Jarvis G.P., and Martelli M.D. (Eds). Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses (2000), Summers Academic Press, San Diego 159-165
7. Huelsenbeck J.P., and Ronquist F. MrBayes: A Program for the Bayesian Inference of Phylogeny, 3.0 (2003), Rochester, New York
8. Irusta P.M., Borca M.V., Kutish G.F., Lu Z., Caler E., Carrillo C., and Rock D.L. Amino acid tandem repeats within a late viral gene define the central variable region of African swine fever virus. Virology 220 (1996) 20-27
9. Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
10. Lubisi, B.A., 2005. Molecular epidemiology of African swine fever in East Africa. M.Sc. Dissertation. University of Pretoria, pp. 27-83.
11. Lubisi B.A., Bastos A.D., Dwarka R.M., and Vosloo W. Molecular epidemiology of African swine fever in East Africa. Arch. Virol. 150 (2005) 2439-2452
12. Malmquist W.A., and Hay D. Haemadsorption and cytopathic effect produced by African swine fever virus in swine bone marrow and buffy coat cultures. Am. J. Vet. Res. 21 (1960) 104-108
13. Montgomery R.E. On a form of swine fever occurring in British East Africa (Kenya Colony). J. Comp. Pathol. 34 (1921) 159-191
14. Nix R.J., Gallardo C., Hutchings G., Blanco E., and Dixon L.K. Molecular epidemiology of African swine fever virus studied by analysis of four variable genome regions. Arch. Virol. 151 (2006) 2475-2494
15. Penrith M.-L. Control of African swine fever for smallholder pig producers in sub-Saharan Africa. Proceedings of the Vet Africa Congress. Johannesburg, South Africa, 30th July-1st August 2005 (2005) 63-70
16. Penrith M.-L., Thomson G.R., and Bastos A.D.S. African swine fever. In: Coetzer J.A.W., and Tustin R.C. (Eds). Infectious Diseases of Livestock with Special Reference to Southern Africa. 2nd ed. (2004), Oxford University Press, Cape Town, London, New York 1087-1119
17. Penrith, M.L., Lopes Pereira, C., Lopes da Silva, M.M.R., Quembo, C., Nhamusso, A., Banze, J., in press. African swine fever in Mozambique: review, risk factors and considerations for control. Onderstepoort J. Vet. Res.
18. Phologane S.B., Bastos A.D.S., and Penrith M.L. Intra- and inter-genotypic size variation in the central variable region of the 9RL open reading frame of diverse African swine fever viruses. Virus Genes 31 (2005) 357-360
19. Pini A., and Hurter L.R. African swine fever: an epizootiological review with special reference to the South African situation. J. S. Afr. Vet. Ass. 46 (1975) 227-232
20. Posada D., and Crandall K.A. ModelTest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
21. Steyn D.G. East African virus disease in pigs. Proceedings of the 18th Report of the Director of Veterinary Services and Animal Industry, vol. 1. Union of South Africa (1932) 99-109
22. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.10 MA (2003), Sinauer Associates, Inc., USA
23. Thomson G.R., Gainaru G., and van Dellen A.F. Experimental infection of warthog (Phacochoerus aethiopicus) with African swine fever virus. Onderstepoort J. Vet. Res. 47 (1980) 19-22
24. Vosloo W., Bastos A.D.S., and Boshoff C.I. Retrospective genetic analysis of SAT-1 type foot-and-mouth disease outbreaks in southern Africa. Arch. Virol. 151 (2006) 285-298
25. Wesley R.D., and Tuthill A.E. Genome relatedness among African swine fever virus field isolates by restriction endonuclease analysis. Prev. Vet. Med. 2 (1984) 53-62
26. Yu M., Morrissy C.J., and Westbury H.A. Strong sequence conservation of African swine fever virus p72 protein provides the molecular basis for its antigenic stability. Arch. Virol. 141 (1996) 1795-1802