Novel algorithm for MALDI-TOF baseline drift removal

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05

Volumn 2005, Issue , 2005, Pages

  Kolibal, Joseph ^a   Howard, Daniel ^b  

^a The University of Southern Mississippi   (United States)

^b QINETIQ   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; MASS SPECTROMETRY; OPTIMIZATION; PROTEINS; RANDOM PROCESSES; SIGNAL PROCESSING;

BASELINE DRIFTS; FLIGHT MASS SPECTROMETRY; STOCHASTIC BERNSTEIN FUNCTION APPROXIMATION (SBFA);

EVOLUTIONARY ALGORITHMS;

EID: 33847216533     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/cibcb.2005.1594946     Document Type: Conference Paper

References (12)

1. M. Karas, F. Hillenkamp, "Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons", Anal Chem., 1988, Oct 15; 60(20):2299-301
2. B. Williams, S. Cornell, A. Crecelius, R. Caprioli, B. Dawant, and B. Bodenheimer, "An algorithm for baseline correction of MALDI mass spectra", Proceedings of the 43rd ACM Southeast Conference, March 18-20, 2005, Kennesaw, GA USA.
3. J. Kolibal, C. Saltiel, "Data regularization using stochastic methods", submitted to: SIAM Journal on Numerical Analysis. Paper ID (manuscript #) 063083, 2005.
4. G. Lorentz, Bernstein Polynomials, Chelsea, New York, 1986.
5. A. Krutchinsky, B. Chait, J. Am. Soc. Mass Spectrom, 13, 2002, pp. 129-134.
6. T. Bäck, D.B. Fogel, and Z. Michalewicz, (eds.), Handbook on Evolutionary Computation. Bristol: Institute of Physics Publishing and Oxford, New York: Oxford University Press, 1997.
7. T. Bäck, Evolutionary Algorithms in Theory and Practice - Evolution Strategies, Evolutionary Programming, Genetic Algorithms. New York, Oxford: Oxford University Press, 1996.
8. D. E. Goldberg, Genetic Algorithms in Search, Optimization, and Machine Learning. Reading, Mass.: Addison-Wesley, 1989.
9. J. R. Koza, Genetic Programming: On the Programming of Computers by Means of Natural Selection. Cambridge: MIT Press, 1992.
10. J. R. Koza, Genetic Programming II: Automatic Discovery of Reusable Programs. Cambridge: MIT Press, 1994.
11. J. R. Koza, F. H. Bennett, D. Andre, and M. A. Keane, Genetic Programming III: Darwinian Invention and Problem Solving. San Francisco, CA: Morgan Kaufmann, 1999.
12. D. Howard, J. Kolibal, "Solution of differential equations with genetic programming and the stochastic Bernstein interpolation", Biocomputing Developmental Systems Group, University of Limerick Technical Report No. BDS-TR-2005-001, Ireland, June 2005: http://www.genetic-programming. org/hc2005/cfe2005.html.