BIRCH: A user-oriented, locally-customizable, bioinformatics system

BMC Bioinformatics

Volumn 8, Issue , 2007, Pages

  Fristensky, Brian ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS PROGRAMS; BIOINFORMATICS RESOURCES; BIOINFORMATICS SOFTWARE; BIOLOGICAL RESEARCH; COMPUTATIONAL RESOURCES; NETWORK-CENTRIC DESIGN; ORGANIZATIONAL FRAMEWORKS; SYSTEM ADMINISTRATORS;

TOOLS;

BIOINFORMATICS;

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; BIOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; COMPUTER SYSTEM; DATA BASE; GENETICS; HUMAN COMPUTER INTERACTION; INFORMATION PROCESSING; COMPUTER LANGUAGE; FACTUAL DATABASE; INFORMATION RETRIEVAL; INTERNET; PROCEDURES; SYSTEM ANALYSIS;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; INFORMATION STORAGE AND RETRIEVAL; INTERNET; PROGRAMMING LANGUAGES; SOFTWARE; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

EID: 33847138998     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-54     Document Type: Article

References (28)

1. Fristensky B Building a multiuser sequence analysis facility using freeware Bioinformatics Methods and Protocols Humana Press Misener S, Krawetz S 1999 131-145
2. Rice P Longden I Bleasby A EMBOSS: The European Molecular Biology Open Software Suite Trends in Genetics 2000 16 276-277 10827456
3. Staden R Beal KF Bonfield JK The Staden Package, 1998 Computer Methods in Molecular Biology, Bioinformatics Methods and Protocols Humana Press, Totowa, NJ Misener S, Krawetz SA 1998 132 115-130
4. BioRPMS http://apt.bea.ki.se/
5. Field D Tiwari B Booth T Houten S Swan D Bertrand N Thurston M Open Software for Biologists: From famine to feast Nature Biotechnology 2006 24 801-803 16841067
6. Carver T Bleasby A The design of Jemboss: A graphical user interface to EMBOSS Bioinformatics 2003 19 1837-1843 14512356
7. Kaptain extensions to EMBOSS http://userpage.fu-berlin.de/~sgmd/
8. Kaptain http://kaptain.sourceforge.net/
9. Letondal C A Web interface generator for molecular biology programs in Unix Bioinformatics 2001 17 73-82 11222264
10. Oinn T Addis M Ferris J Marvin D Senger M Greenwood M Carver T Glover K Pocock MR Wipat A Li P Taverna: A tool for the composition and enactment of bioinformatics workflows Bioinformatics 2004 20 17 3045-3054 15201187
11. Fristensky B Network computing: Restructuring how scientists use computers and what we get out of them Bioinformatics Methods and Protocols Humana Press Misener S, Krawetz S 1999 401-412
12. Fristensky B Installing bioinformatics software in a server-based computing environment Introduction to Bioinformatics Humana Press Krawetz S, Womble DD 2003 285-296
13. Fristensky B Management of a server-based bioinformatics resource Introduction to Bioinformatics Humana Press Krawetz S, Womble DD 2003 297-306
14. Smith SW Overbeek R Woese CR Gilbert W Gillevet PM The genetic data environment: An expandable GUI for multiple sequence analysis Comput Appl Biosci 1994 10 671-675 7704666
15. Linton E MacGDE: Genetic Data Environment for MacOSX http://www.msu.edu/ ~lintone/macgde/
16. NCBI applications ftp://ftp.ncbi.nih.gov
17. Pearson WR Flexible sequence similarity searching with the FASTA3 program package Methods Mol Biol 2000 132 185-219 10547837
18. Felsenstein J PHYLIP - Phylogeny Inference Package (Version 3.2) Cladistics 1989 5 164-166
19. Notredame C Higgins D Heringa J T-Coffee: A novel method for multiple sequence alignments J Mol Biol 2000 302 205-217 10964570
20. Gilbert D Readseq http://iubio.bio.indiana.edu/soft/molbio/readseq/java/
21. XWin32 http://www.starnet.com/
22. CygWin http://x.cygwin.com/
23. Sun Secure Global Desktop http://www.sun.com/software/products/sgd/
24. Real VNC http://www.realvnc.com
25. Paracel Blast http://www.paracel.com
26. Durbin R Thierry Mieg J A C. elegans Database http://www.acedb.org
27. Michalickova K Bader GD Dumontier M Lieu H Betel D Isserlin R Hogue CW Seqhound: Biological sequence and structure database as a platform for bioinformatics research BMC Bioinformatics 2002 3 32 138791 12401134
28. Bruno WJ Socci ND Halpern AL Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction Mol Biol Evol 2000 17 189-197 10666718