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Volumn 91, Issue 2, 2007, Pages 115-126

Role of eukaryotic microbiota in soil survival and catabolic performance of the 2,4-D herbicide degrading bacteria Cupriavidus necator JMP134

Author keywords

Bioaugmentation; Protozoa; Ralstonia eutropha JMP134; T RFLP; tfdA gene

Indexed keywords

2,4 DICHLOROPHENOXYACETIC ACID; BACTERIAL PROTEIN; CYCLOHEXIMIDE; PROTEIN TFDA; RNA 16S; RNA 18S; UNCLASSIFIED DRUG;

EID: 33847055463     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-006-9101-y     Document Type: Article
Times cited : (20)

References (33)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 0003855149 scopus 로고
    • Ausubel F, Brent R, Kingston R, Moore D, Seidman J, Smith J, Struhl K (eds) 2nd edn. Greene Publishing Associate, New York
    • Ausubel F, Brent R, Kingston R, Moore D, Seidman J, Smith J, Struhl K (eds) (1992) Short Protocols in Molecular Biology, 2nd edn. Greene Publishing Associate, New York
    • (1992) Short Protocols in Molecular Biology
  • 3
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18:117-143
    • (1993) Aust J Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 4
    • 0016608257 scopus 로고
    • Regulation of predation by prey density: The protozoan- Rhizobium relationship
    • Danso SK, Alexander M (1975) Regulation of predation by prey density: the protozoan- Rhizobium relationship. Appl Microbiol 29:515-521
    • (1975) Appl Microbiol , vol.29 , pp. 515-521
    • Danso, S.K.1    Alexander, M.2
  • 6
  • 7
    • 0019511050 scopus 로고
    • Related properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus
    • Don RH, Pemberton JM (1981) Related properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J Bacteriol 145:681-686
    • (1981) J Bacteriol , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 8
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4)
    • Don RH, Weightman AJ, Knackmuss HJ, Timmis KN (1985) Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4). J Bacteriol 161:85-90
    • (1985) J Bacteriol , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.J.3    Timmis, K.N.4
  • 9
    • 0005536404 scopus 로고
    • Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway
    • Franklin FCH, Bagdasarian M, Bagdasarian MM, Timmis KN (1981) Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc Natl Acad Sci USA 78:7458-7462
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 7458-7462
    • Franklin, F.C.H.1    Bagdasarian, M.2    Bagdasarian, M.M.3    Timmis, K.N.4
  • 10
    • 0036304247 scopus 로고    scopus 로고
    • tfdA -like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium - Agromonas - Nitrobacter - Afipia cluster in α- proteobacteria
    • Itoh K, Kanda R, Sumita Y, Kim H, Kamagata Y, Suyama K, Yamamoto H, Hausinger RP, Tiedje JM (2002) tfdA -like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium - Agromonas - Nitrobacter - Afipia cluster in α- proteobacteria. Appl Environ Microbiol 68:3449-3454
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3449-3454
    • Itoh, K.1    Kanda, R.2    Sumita, Y.3    Kim, H.4    Kamagata, Y.5    Suyama, K.6    Yamamoto, H.7    Hausinger, R.P.8    Tiedje, J.M.9
  • 11
    • 0031009131 scopus 로고    scopus 로고
    • Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria
    • Kamagata Y, Fulthorpe RR, Tamura K, Takami H, Forney LJ, Tiedje JM (1997) Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria. Appl Environ Microbiol 63:2266-2272
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2266-2272
    • Kamagata, Y.1    Fulthorpe, R.R.2    Tamura, K.3    Takami, H.4    Forney, L.J.5    Tiedje, J.M.6
  • 12
    • 0036134929 scopus 로고    scopus 로고
    • Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment
    • Kitagawa W, Takami S, Miyauchi K, Masai E, Kagamata Y, Tiedje JM, Fukuda M (2002) Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. J Bacteriol 184:509-518
    • (2002) J Bacteriol , vol.184 , pp. 509-518
    • Kitagawa, W.1    Takami, S.2    Miyauchi, K.3    Masai, E.4    Kagamata, Y.5    Tiedje, J.M.6    Fukuda, M.7
  • 13
    • 0029659658 scopus 로고    scopus 로고
    • Competition between Pseudomonas fluorescens Ag1 and Alcaligenes eutrophus JMP134 (pJP4) during colonization of barley roots
    • Kragelund L, Nybroe O (1996) Competition between Pseudomonas fluorescens Ag1 and Alcaligenes eutrophus JMP134 (pJP4) during colonization of barley roots. FEMS Microbiol Ecol 20:41-51
    • (1996) FEMS Microbiol Ecol , vol.20 , pp. 41-51
    • Kragelund, L.1    Nybroe, O.2
  • 14
    • 0002542478 scopus 로고
    • Information theory in ecology
    • Margalef R (1958) Information theory in ecology. Gen Syst 3:36-71
    • (1958) Gen Syst , vol.3 , pp. 36-71
    • Margalef, R.1
  • 15
    • 2142689713 scopus 로고    scopus 로고
    • Efficient degradation of 2,4,6-trichlorophenol requires a set of catabolic genes related to tcp genes from Ralstonia eutropha JMP134 (pJP4)
    • Matus V, Sánchez MA, Martínez M, González B (2003) Efficient degradation of 2,4,6-trichlorophenol requires a set of catabolic genes related to tcp genes from Ralstonia eutropha JMP134 (pJP4). Appl Environ Microbiol 69:7108-7115
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7108-7115
    • Matus, V.1    Sánchez, M.A.2    Martínez, M.3    González, B.4
  • 16
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71:491-499
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 20
    • 0033855541 scopus 로고    scopus 로고
    • Comparison of 2,4- dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors
    • Newby DT, Gentry TJ, Pepper IL (2000a) Comparison of 2,4- dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl Environ Microbiol 66:3399-3407
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3399-3407
    • Newby, D.T.1    Gentry, T.J.2    Pepper, I.L.3
  • 21
    • 0033989202 scopus 로고    scopus 로고
    • Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria
    • Newby DT, Josephson KL, Pepper IL (2000b) Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria. Appl Environ Microbiol 66:290-296
    • (2000) Appl Environ Microbiol , vol.66 , pp. 290-296
    • Newby, D.T.1    Josephson, K.L.2    Pepper, I.L.3
  • 22
    • 0029668834 scopus 로고    scopus 로고
    • Growth and viability of Alcaligenes eutropha JMP134 in seawater is affected by substrate and nutrient amendment
    • Nybroe O, Einarson K, Ahl T (1996) Growth and viability of Alcaligenes eutropha JMP134 in seawater is affected by substrate and nutrient amendment. Lett Appl Microbiol 22:366-370
    • (1996) Lett Appl Microbiol , vol.22 , pp. 366-370
    • Nybroe, O.1    Einarson, K.2    Ahl, T.3
  • 24
    • 0242417580 scopus 로고    scopus 로고
    • Impact of protozoan grazing on bacterial community structure in soil microcosms
    • Ronn R, McCaig AE, Griffiths BS, Prosser JL (2002) Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl Environ Microbiol 68:6094-6105
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6094-6105
    • Ronn, R.1    McCaig, A.E.2    Griffiths, B.S.3    Prosser, J.L.4
  • 25
    • 10444275157 scopus 로고    scopus 로고
    • A previously unexposed forest soil microbial community degrades high levels of the pollutant 2,4,6-trichlorophenol
    • Sánchez MA, Vásquez MA, González B (2004) A previously unexposed forest soil microbial community degrades high levels of the pollutant 2,4,6-trichlorophenol. Appl Environ Microbiol 70:7567-7570
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7567-7570
    • Sánchez, M.A.1    Vásquez, M.A.2    González, B.3
  • 26
    • 0029903298 scopus 로고    scopus 로고
    • Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase from Burkholderia sp. strain RASC
    • Suwa Y, Wright AD, Fukimori F, Nummy KA, Hausinger RP, Holben WE, Forney LJ (1996) Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase from Burkholderia sp. strain RASC. Appl Environ Microbiol 62:2464-2469
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2464-2469
    • Suwa, Y.1    Wright, A.D.2    Fukimori, F.3    Nummy, K.A.4    Hausinger, R.P.5    Holben, W.E.6    Forney, L.J.7
  • 27
    • 0019170284 scopus 로고
    • Survival of two enterobacteria in feces buried in soil under field conditions
    • Temple KL, Camper AK, McFeters GA (1980) Survival of two enterobacteria in feces buried in soil under field conditions. Appl Environ Microbiol 40:794-797
    • (1980) Appl Environ Microbiol , vol.40 , pp. 794-797
    • Temple, K.L.1    Camper, A.K.2    McFeters, G.A.3
  • 29
    • 0031959693 scopus 로고    scopus 로고
    • Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation in soil by dissemination of catabolic plasmids
    • Top EM, Van Daele P, De Saeyer N, Forney LJ (1998) Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation in soil by dissemination of catabolic plasmids. Anton Leeuw Int J G 73:87-94
    • (1998) Anton Leeuw Int J G , vol.73 , pp. 87-94
    • Top, E.M.1    Van Daele, P.2    De Saeyer, N.3    Forney, L.J.4
  • 30
    • 0036848574 scopus 로고    scopus 로고
    • Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters
    • Top EM, Springael D, Boon N (2002) Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters. FEMS Microbiol Ecol 42:199-208
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 199-208
    • Top, E.M.1    Springael, D.2    Boon, N.3
  • 31
    • 3042826882 scopus 로고    scopus 로고
    • Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
    • Trefault N, De la Iglesia R, Molina AM, Manzano M, Ledger T, Pérez-Pantoja D, Sánchez MA, Stuardo M, González B (2004) Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ Microbiol 6:655-668
    • (2004) Environ Microbiol , vol.6 , pp. 655-668
    • Trefault, N.1    De la Iglesia, R.2    Molina, A.M.3    Manzano, M.4    Ledger, T.5    Pérez-Pantoja, D.6    Sánchez, M.A.7    Stuardo, M.8    González, B.9
  • 32
    • 0031015445 scopus 로고    scopus 로고
    • Degradation of chlorophenols by Alcaligenes eutrophus JMP134 (pJP4) in bleached Kraft mill effluent
    • Valenzuela J, Bumann U, Céspedes R, Padilla L, González B (1997) Degradation of chlorophenols by Alcaligenes eutrophus JMP134 (pJP4) in bleached Kraft mill effluent. Appl Environ Microbiol 63:227-232
    • (1997) Appl Environ Microbiol , vol.63 , pp. 227-232
    • Valenzuela, J.1    Bumann, U.2    Céspedes, R.3    Padilla, L.4    González, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.