Evaluation of a Novel Approach for Peptide Sequencing: Laser-induced Acoustic Desorption Combined with P(OCH3)2+ Chemical Ionization and Collision-activated Dissociation in a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer

Journal of the American Society for Mass Spectrometry

Volumn 18, Issue 3, 2007, Pages 525-540

  Somuramasami, Jayalakshmi ^a   Kenttämaa, Hilkka I ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COLLISION ACTIVATED DISSOCIATION; INTACT NEUTRAL MOLECULES; LASER INDUCED ACOUSTIC DESORPTION; METHANOL MOLECULES;

CYCLOTRON RESONANCE; DESORPTION; FOURIER TRANSFORMS; IONIZATION; IRRADIATION; MASS SPECTROMETERS; METHANOL;

PROTEINS;

DIMETHOXYPHOSPHENIUM; PHOSPHORUS DERIVATIVE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; COLLISIONALLY ACTIVATED DISSOCIATION; DESORPTION; DISSOCIATION; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; IRRADIATION; LASER; MASS SPECTROMETER; PEPTIDE ANALYSIS;

CYCLOTRONS; EVALUATION STUDIES; FOURIER ANALYSIS; IONS; LASERS; MASS SPECTROMETRY; MOLECULAR STRUCTURE; PEPTIDES; PROTEIN ISOFORMS; SEQUENCE ANALYSIS, PROTEIN;

EID: 33847053560     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2006.10.009     Document Type: Article

References (62)

1. Barber M., Bordoli R.S., Sedgwick R.D., and Tyler A.N. Fast Atom Bombardment of Solids (F.A.B.): A New Ion Source for Mass Spectrometry. J. Chem. Soc. Chem. Commun. 7 (1981) 325-327
2. Beranová-Giorgianni S., and Desiderio D.M. Fast Atom Bombardment Mass Spectrometry of Synthetic Peptides. Methods Enzymol. 289 (1987) 478-499
3. Caprioli R.M. Bombardment Mass Spectrometry. Anal. Chem. 62 (1990) 477A-485A
4. Karas M., and Hillenkamp F. Laser Desorption Ionization of Proteins with Molecular Masses Exceeding 10,000 Daltons. Anal. Chem. 60 (1988) 2299-2301
5. 2-laser. Rapid Commun. Mass Spectrom. 5 (1991) 128-131
6. Nordhoff E., Ingendoh A., Cramer R., Overberg A., Stahl B., Karas M., Hillenkamp F., Crain P.F., and Chait B. Matrix-assisted Laser Desorption/Ionization Mass Spectrometry of Nucleic Acids with Wavelengths in the Ultraviolet and Infrared. Rapid Commun. Mass Spectrom. 6 (1992) 771-776
7. Yamashita M., and Fenn J.B. Electrospray Ion Source. Another Variation on the Free-jet Theme. J. Phys. Chem. 88 (1984) 4451-4459
8. Yamashita M., and Fenn J.B. Negative Ion Production with the Electrospray Ion Source. J. Phys. Chem. 88 (1984) 4671-4675
9. Wong S.F., Meng C.K., and Fenn J.B. Multiple Charging in Electrospray Ionization of Poly(ethylene glycols). J. Phys. Chem. 92 (1988) 546-550
10. Fenn J.B., Mann M., Meng C.K., Wong S.F., and Whitehouse C.M. Electrospray Ionization for Mass Spectrometry of Large Biomolecules. Science 246 (1989) 64-71
11. Smith R.D., Loo J.A., Edmonds C.G., Barinaga C.J., and Udseth H.R. New Developments in Biochemical Mass Spectrometry: Electrospray Ionization. Anal. Chem. 62 (1990) 882-899
12. Fenn J.B., Mann M., Meng C.K., Wong S.F., and Whitehouse C.M. Electrospray Ionization-Principles and Practice. Mass Spectrom. Rev. 9 (1990) 37-70
13. Smith R.D., Loo J.A., Ogorzalek Loo R.R., Busman M., and Udseth H.R. Principles and Practice of Electrospray Ionization-Mass Spectrometry of Large Polypeptides and Proteins. Mass Spectrom. Rev. 10 (1991) 359-452
14. Papayannopoulos I.A. The Interpretation of Collision-induced Dissociation Tandem Mass Spectra of Peptides. Mass Spectrom. Rev. 14 (1995) 49-73
15. Somogyi A., Wysocki V.H., and Mayer I. The Effect of Protonation Site on Bond Strengths in Simple Peptides: Application of Ab Initio and Modified Neglect of Differential Overlap Bond Orders and Modified Neglect of Differential Overlap Energy Partitioning. J. Am. Soc. Mass Spectrom. 5 (1994) 704-717
16. Cox K.A., Gaskell S.J., Morris M., and Whiting A. Role of the Site of Protonation in the Low-energy Decompositions of Gas-phase Peptide Ions. J. Am. Soc. Mass Spectrom. 7 (1996) 522-531
17. Gorman G.S., and Amster I.J. Photodissociation Studies of Small Peptide Ions by Fourier Transform Mass Spectrometry. Org. Mass Spectrom. 28 (1993) 437-444
18. Dongré A.R., Somogyi A., and Wysocki V.H. Surface-induced Dissociation: An Effective Tool to Probe Structure, Energetics and Fragmentation Mechanisms of Protonated Peptides. J. Mass Spectrom. 31 (1996) 339-350
19. Zubarev R.A., Kelleher N.L., and McLafferty F.W. Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process. J. Am. Chem. Soc. 120 (1998) 3265-3266
20. Price W.D., and Williams E.R. Activation of Peptide Ions by Blackbody Radiation: Factors That Lead to Dissociation Kinetics in the Rapid Energy Exchange Limit. J. Phys. Chem. A 101 (1997) 8844-8852
21. Green M.K., and Lebrilla C.B. Ion-molecule Reactions as Probes of Gas-phase Structures of Peptides and Proteins. Mass Spectrom. Rev. 16 (1997) 53-71
22. Freitas M.A., O'Hair R.A.J., Dua S., and Bowie J.H. The Methoxymethyl Cation Cleaves Peptide Bonds in the Gas Phase. Chem. Commun. 15 (1997) 1409-1410
23. +. Int. J. Mass Spectrom. 195/196 (2000) 609-623
24. Perez J., Petzold C.J., Watkins M.A., Vaughn W.E., and Kenttämaa H.I. Laser Desorption in Transmission Geometry Inside a Fourier-transform Ion Cyclotron Resonance Mass Spectrometer. J. Am. Soc. Mass Spectrom. 10 (1999) 1105-1110
25. Perez J., Ramirez-Arizmendi L.E., Petzold C.J., Guler L.P., Nelson E.D., and Kenttämaa H.I. Laser-induced Acoustic Desorption/Chemical Ionization in Fourier-transform Ion Cyclotron Resonance Mass Spectrometry. Int. J. Mass Spectrom. 198 (2000) 173-188
26. Petzold C.J. Ph.D. Thesis (2002), Purdue University, West Lafayette, IN
27. Shea, R. C.; Habicht, S. C.; Vaughn, W. E.; Kenttämaa, H. I. Design and Characterization of a High-power Laser-induced Acoustic Desorption (LIAD) Probe Coupled with a Fourier-transform Ion Cyclotron Resonance Mass Spectrometer. In preparation.
28. Gauthier J.W., Trautman T.R., and Jacbson D.B. Sustained Off-resonance Irradiation for Collision-activated Dissociation Involving Fourier Transform Mass Spectrometry. Collision-activated Dissociation Technique That Emulates Infrared Multiphoton Dissociation. Anal. Chim. Acta 246 (1991) 211-225
29. Cowley A.H., and Kemp R.A. Synthesis and Reaction Chemistry of Stable Two-Coordinate Phosphorus Cations (Phosphenium Ions). Chem. Rev. 85 (1985) 367-382
30. + Species and the Proton Affinities of HPO and POH. J. Phys. Chem. 95 (1991) 4318-4323
31. Harrison J.F. Electronic Structure of the Phosphenium Ions PH2+, HPH+, and PF2+. J. Am. Chem. Soc. 103 (1981) 7406-7413
32. + with Cyclic Vicinal Diols. J. Org. Chem. 62 (1997) 8702-8707
33. O'Hair R.A.J. Gas-Phase Positive and Negative Ion Chemistry of Organophosphorus Compounds via Mass Spectrometric Techniques. In: Hartley F.R. (Ed). The Chemistry of Organophosphorus Compounds-Volume 4 765 (1996), Wiley, New York, NY 731
34. + Ions. Chem. Phys. Lett. 98 (1983) 162-166
35. + Ions (n = 0 to 4) with Several Molecular Gases at 300 K. J. Chem. Phys. 90 (1989) 6213-6219
36. Hodges R.V., McDonnell T.J., and Beauchamp J.L. Properties and Reactions of Trimethyl Phosphite, Trimethyl Phosphate, Triethyl Phosphate, and Trimethyl Phosphorothionate by Ion Cyclotron Resonance Spectroscopy. J. Am. Chem. Soc. 102 (1980) 1327-1332
37. Holtz D., Beauchamp J.L., and Eyler J.R. Acidity, Basicity, and Ion-molecule Reactions of Phosphine in the Gas Phase by Ion Cyclotron Resonance Spectroscopy. J. Am. Chem. Soc. 92 (1970) 7045-7055
38. Wanczek K.P., Hartmann H., and Roeschenthaler G.V. Ion Chemistry of Dimethylaminodifluorophosphine and Its Mixtures with Methyldifluorophosphine and Dimethylfluorophosphine, Investigated by Ion Cyclotron Resonance Spectrometry. Adv. Mass Spectrom. 7B (1978) 1301-1307
39. NcNeal C.J., Macfarlane R.D., and Thurston E.L. Thin Film Deposition by the Electrospray Method for Californium-252 Plasma Desorption Studies of Involatile Molecules. Anal. Chem. 51 (1979) 2036-2039
40. Hensel R.R., King R.C., and Ownes K.G. Electrospray Sample Preparation for Improved Quantitation in Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry. Rapid Commun. Mass Spectrom. 11 (1997) 1785-1793
41. Guan S., Kim H.S., Marshall A.G., Wahl M.C., Wood T.D., and Xiang X. Shrink-wrapping an Ion Cloud for High-performance Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Chem. Rev. 94 (1994) 2161-2182
42. Dunbar R.C. Infrared Radiative Cooling of Gas-phase Cooling of Ions. Mass Spectrom. Rev. 11 (1992) 309-339
43. Chen L., Wang T.C.L., Ricca T.L., and Marshall A.G. Phase-modulated Stored Waveform Inverse Fourier Transform Excitation for Trapped Ion Mass Spectrometry. Anal. Chem. 59 (1987) 449-454
44. Marshall A.G., Wang T.C.L., and Ricca T.L. Tailored Excitation for Fourier Transform Ion Cyclotron Mass Spectrometry. J. Am. Chem. Soc. 107 (1985) 7893-7897
45. Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Zakrzewski V.G., Montgomery Jr. J.A., Stratmann R.E., Burant J.C., Dapprich S., Millam J.M., Daniels A.D., Kudin K.N., Strain M.C., Farkas O., Tomasi J., Barone V., Cossi M., Cammi R., Mennucci B., Pomelli C., Adamo C., Clifford S., Ochterski J., Petersson G.A., Ayala P.Y., Cui Q., Morokuma K., Malick D.K., Rabuck A.D., Raghavachari K., Foresman J.B., Cioslowski J., Ortiz J.V., Baboul A.G., Stefanov B.B., Liu G., Liashenko A., Piskorz P., Komaromi I., Gomperts R., Martin R.L., Fox D.J., Keith T., Al-Laham M.A., Peng C.Y., Nanayakkara A., Gonzalez C., Challacombe M., Gill P.M.W., Johnson B., Chen W., Wong M.W., Andres J.L., Gonzalez C., Head-Gordon M., Replogle E.S., and Pople J.A. Gaussian 98 (1998), Gaussian, Inc, Pittsburgh, PA
46. Roepstorff P., and Fohlman J. Proposal for a Common Nomenclature for Sequence Ions in Mass Spectra of Peptide Ions. Biomed. Mass Spectrom. 11 (1984) 601
47. Biemann K. Contributions of Mass Spectrometry to Peptide and Protein Structure. Biomed. Environ. Mass Spectrom. 16 (1988) 99-111
48. Nold M.J., Wesdemiotis C., Yalcin T., and Harrison A.G. Amide Bond Dissociation in Protonated Peptides. Structures of the N-terminal Ionic and Neutral Fragments. Int. J. Mass Spectrom. Ion Proc. 164 (1997) 137-153
49. Cordero M.M., Houser J.J., and Wesdemiotis C. The Neutral Products Formed during Backbone Fragmentations of Protonated Peptides in Tandem Mass Spectrometry. Anal. Chem. 65 (1993) 1594-1601
50. Yalcin T., Khouw C., Csizmadia I.G., Peterson M.R., and Harrison A.G. Why Are B Ions Stable Species in Peptide Spectra?. J. Am. Soc. Mass Spectrom. 6 (1995) 1164-1174
51. rnott D., ottmeier D., ates N., habanowitz J., and unt D.F. Proceedings of the 42nd ASMS Conference on Mass Spectrometry, Chicago, IL. Fragmentation of Multiply Protonated Peptides Under Low Energy Conditions (1994) 470 29 May-3 June
52. Ambihapathy K., Yalcin T., Leung H.-W., and Harrison A.G. Pathways to Immonium Ions in the Fragmentation of Protonated Peptides. J. Mass Spectrom. 32 (1997) 209-215
53. Vachet R.W., Ray K.L., and Glish G.L. Origin of Product Ions in the MS/MS Spectra of Peptides in a Quadrupole Ion Trap. J. Am. Soc. Mass Spectrom. 9 (1998) 341-344
54. n (n ≥ 3) Ions in Peptide Spectra. J. Am. Soc. Mass Spectrom. 7 (1996) 233-242
55. Vaisar T., and Urban J. Low-energy Collision Induced Dissociation of Protonated Peptides. Importance of an Oxazolone Formation for a Peptide Bond Cleavage. Eur. J. Mass Spectrom. 4 (1998) 359-364
56. Schlosser A., and Lehmann W.D. Five-membered Ring Formation in Unimolecular Reactions of Peptides: A Key Structural Element Controlling Low-energy Collision-induced Dissociation of Peptides. J. Mass Spectrom. 35 (2000) 1382-1390
57. Paizs B., and Suhai S. Towards Understanding the Tandem Mass Spectra of Protonated Oligopeptides. 1: Mechanism of Amide Bond Cleavage. J. Am. Soc. Mass Spectrom. 15 (2004) 103-113
58. Polce M.J., Ren D., and Wesdemiotis C. Dissociation of the Peptide Bond in Protonated Peptides. J. Mass Spectrom. 35 (2000) 1391-1398
59. Harrison A.G. Fragmentation Reactions of Protonated Peptides Containing Phenylalanine: A Linear Free Energy Correlation in the Fragmentation of H-Gly-XXX-Phe-OH. Int. J. Mass Spec. 217 (2002) 185-193
60. Grewal R.N., Aribi H.E., Harrison A.G., Michael Siu K.W., and Hopkinson A.C. Fragmentation of Protonated Tripeptides: The Proline Effect Revisited. J. Phys. Chem. B 108 (2004) 4899-4908
61. Laskin J., Denisov E., and Futrell J.H. Fragmentation of Small Peptides from Multiple-collision Activation and Surface-induced Dissociation in FT-ICR MS. Int. J. Mass Spectrom. 219 (2002) 189-201
62. Aribi H.E., Orlova G., Rodriquez C.F., Almeida D.R.P., Hopkinson A.C., and Siu M.K.M. Fragmentation Mechanisms of Product Ions from Protonated Tripeptides. J. Phys. Chem. B 108 (2004) 18743-18749