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Volumn 120, Issue 2, 2007, Pages 309-319

Alternative RNA splicing complexes containing the scaffold attachment factor SAFB2

Author keywords

Nuclear organisation; RNA processing; Splicing

Indexed keywords

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U; PROTEIN SAFB2; PROTEIN SAM68; PROTEIN TRA2 BETA; REGULATOR PROTEIN; SCAFFOLD ATTACHMENT FACTOR B2 PROTEIN; SCAFFOLD PROTEIN; UNCLASSIFIED DRUG;

EID: 33847000872     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.03344     Document Type: Article
Times cited : (42)

References (48)
  • 1
    • 0034405427 scopus 로고    scopus 로고
    • Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry
    • Ajuh, P., Koster, B., Panov, K., Zomerdijk, J. C., Mann, M. and Lamond, A. I. (2000). Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. EMBO J. 19, 6569-6581.
    • (2000) EMBO J. , vol.19 , pp. 6569-6581
    • Ajuh, P.1    Koster, B.2    Panov, K.3    Zomerdijk, J.C.4    Mann, M.5    Lamond, A.I.6
  • 2
    • 31344454049 scopus 로고    scopus 로고
    • Native spliceosomes assemble with pre-mRNA to form supraspliceosomes
    • Azubel, M., Habib, N., Sperling, R. and Sperling, J. (2006). Native spliceosomes assemble with pre-mRNA to form supraspliceosomes. J. Mol. Biol. 356, 955-966.
    • (2006) J. Mol. Biol. , vol.356 , pp. 955-966
    • Azubel, M.1    Habib, N.2    Sperling, R.3    Sperling, J.4
  • 3
    • 30044441988 scopus 로고    scopus 로고
    • The human SWI/SNF subunit Brm is a regulator of alternative splicing
    • Batsche, E., Yaniv, M. and Muchardt, C. (2006). The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat. Struct. Mol. Biol. 13, 22-29.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 22-29
    • Batsche, E.1    Yaniv, M.2    Muchardt, C.3
  • 4
    • 0032740121 scopus 로고    scopus 로고
    • Identification of a bidirectional splicing enhancer: Differential involvement of SR proteins in 5′ or 3′ splice site activation
    • Bourgeois, C. F., Popielarz, M., Hildwein, G. and Stevenin, J. (1999). Identification of a bidirectional splicing enhancer: differential involvement of SR proteins in 5′ or 3′ splice site activation. Mol. Cell. Biol. 19, 7347-7356.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 7347-7356
    • Bourgeois, C.F.1    Popielarz, M.2    Hildwein, G.3    Stevenin, J.4
  • 6
    • 0033634948 scopus 로고    scopus 로고
    • Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing
    • Chou, M.-Y., Underwood, J. G., Nikolic, J., Luu, M. H. T. and Black, D. L. (2000). Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing. Mol. Cell 5, 949-957.
    • (2000) Mol. Cell , vol.5 , pp. 949-957
    • Chou, M.-Y.1    Underwood, J.G.2    Nikolic, J.3    Luu, M.H.T.4    Black, D.L.5
  • 7
    • 29744437121 scopus 로고    scopus 로고
    • Scaffold attachment factor B1 directly interacts with nuclear receptors in living cells and represses transcriptional activity
    • Debril, M. B., Dubuquoy, L., Feige, J. N., Wahli, W., Desvergne, B., Auwerx, J. and Gelman, L. (2005). Scaffold attachment factor B1 directly interacts with nuclear receptors in living cells and represses transcriptional activity. J. Mol. Endocrinol. 35, 503-517.
    • (2005) J. Mol. Endocrinol. , vol.35 , pp. 503-517
    • Debril, M.B.1    Dubuquoy, L.2    Feige, J.N.3    Wahli, W.4    Desvergne, B.5    Auwerx, J.6    Gelman, L.7
  • 8
    • 0035192625 scopus 로고    scopus 로고
    • Stress-induced nuclear bodies are sites of accumulation of pre-mRNA processing factors
    • Denegri, M., Chiodi, I., Corioni, M., Cobianchi, F., Riva, S. and Biamonti, G. (2001). Stress-induced nuclear bodies are sites of accumulation of pre-mRNA processing factors. Mol. Biol. Cell 12, 3502-3514.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 3502-3514
    • Denegri, M.1    Chiodi, I.2    Corioni, M.3    Cobianchi, F.4    Riva, S.5    Biamonti, G.6
  • 9
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J. D., Lebovitz, R. M. and Roeder, R. G. (1983). Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 10
    • 10944220623 scopus 로고    scopus 로고
    • Towards a splicing code
    • Fu, X. D. (2004). Towards a splicing code. Cell 119, 736-738.
    • (2004) Cell , vol.119 , pp. 736-738
    • Fu, X.D.1
  • 11
    • 21244493903 scopus 로고    scopus 로고
    • Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
    • Gornemann, J., Kotovic, K. M., Hujer, K. and Neugebauer, K. M. (2005). Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell 19, 53-63.
    • (2005) Mol. Cell , vol.19 , pp. 53-63
    • Gornemann, J.1    Kotovic, K.M.2    Hujer, K.3    Neugebauer, K.M.4
  • 12
    • 0032739144 scopus 로고    scopus 로고
    • The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn)
    • Hartmann, A. M., Nayler, O., Schwaiger, F. W., Obermeier, A. and Stamm, S. (1999). The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn). Mol. Biol. Cell 10, 3909-3926.
    • (1999) Mol. Biol. Cell , vol.10 , pp. 3909-3926
    • Hartmann, A.M.1    Nayler, O.2    Schwaiger, F.W.3    Obermeier, A.4    Stamm, S.5
  • 15
    • 21244469725 scopus 로고    scopus 로고
    • Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5′ss base pairing in yeast
    • Lacadie, S. A. and Rosbash, M. (2005). Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5′ss base pairing in yeast. Mol. Cell 19, 65-75.
    • (2005) Mol. Cell , vol.19 , pp. 65-75
    • Lacadie, S.A.1    Rosbash, M.2
  • 17
    • 33748351186 scopus 로고    scopus 로고
    • Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
    • Listerman, I., Sapra, A. K. and Neugebauer, K. M. (2006). Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat. Struct. Mol. Biol. 13, 815-822.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 815-822
    • Listerman, I.1    Sapra, A.K.2    Neugebauer, K.M.3
  • 18
    • 0037073946 scopus 로고    scopus 로고
    • Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome
    • Makarov, E. M., Makarova, O. V., Urlaub, H., Gentzel, M., Will, C. L., Wilm, M. and Luhrmann, R. (2002). Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome. Science 298, 2205-2208.
    • (2002) Science , vol.298 , pp. 2205-2208
    • Makarov, E.M.1    Makarova, O.V.2    Urlaub, H.3    Gentzel, M.4    Will, C.L.5    Wilm, M.6    Luhrmann, R.7
  • 19
    • 18344364099 scopus 로고    scopus 로고
    • Understanding alternative splicing: Towards a cellular code
    • Matlin, A. J., Clark, F. and Smith, C. W. (2005). Understanding alternative splicing: towards a cellular code. Nat. Rev. Mol. Cell Biol. 6, 386-398.
    • (2005) Nat. Rev. Mol. Cell Biol. , vol.6 , pp. 386-398
    • Matlin, A.J.1    Clark, F.2    Smith, C.W.3
  • 20
    • 0035793376 scopus 로고    scopus 로고
    • Protein dynamics: Implications for nuclear architecture and gene expression
    • Misteli, T. (2001). Protein dynamics: implications for nuclear architecture and gene expression. Science 291, 843-847.
    • (2001) Science , vol.291 , pp. 843-847
    • Misteli, T.1
  • 21
    • 17144453865 scopus 로고    scopus 로고
    • Human transformer-2-beta gene (SFRS 10): Complete nucleotide sequence, chromosomal localization, and generation of a tissue-specific isoform
    • Nayler, O., Cap, C. and Stamm, S. (1998a). Human transformer-2-beta gene (SFRS 10): complete nucleotide sequence, chromosomal localization, and generation of a tissue-specific isoform. Genomics 53, 191-202.
    • (1998) Genomics , vol.53 , pp. 191-202
    • Nayler, O.1    Cap, C.2    Stamm, S.3
  • 23
    • 0035955709 scopus 로고    scopus 로고
    • Cloning and characterization of an alternatively spliced form of SR protein kinase 1 that interacts specifically with scaffold attachment factor-B
    • Nikolakaki, E., Kohen, R., Hartmann, A. M., Stamm, S., Georgatsou, E. and Giannakouros, T. (2001). Cloning and characterization of an alternatively spliced form of SR protein kinase 1 that interacts specifically with scaffold attachment factor-B. J. Biol. Chem. 276, 40175-40182.
    • (2001) J. Biol. Chem. , vol.276 , pp. 40175-40182
    • Nikolakaki, E.1    Kohen, R.2    Hartmann, A.M.3    Stamm, S.4    Georgatsou, E.5    Giannakouros, T.6
  • 24
    • 0242443220 scopus 로고    scopus 로고
    • Scaffold attachment factors SAFB1 and SAFB2: Innocent bystanders or critical players in breast tumorigenesis?
    • Oesterreich, S. (2003). Scaffold attachment factors SAFB1 and SAFB2: Innocent bystanders or critical players in breast tumorigenesis? J. Cell. Biochem. 90, 653-661.
    • (2003) J. Cell. Biochem. , vol.90 , pp. 653-661
    • Oesterreich, S.1
  • 25
    • 0030885751 scopus 로고    scopus 로고
    • Novel nuclear matrix protein HET binds to and influences activity of the HSP27 promoter in human breast cancer cells
    • Oesterreich, S., Lee, A. V., Sullivan, T. M., Samuel, S. K., Davie, J. R. and Fuqua, S. A. (1997). Novel nuclear matrix protein HET binds to and influences activity of the HSP27 promoter in human breast cancer cells. J. Cell. Biochem. 67, 275-286.
    • (1997) J. Cell. Biochem. , vol.67 , pp. 275-286
    • Oesterreich, S.1    Lee, A.V.2    Sullivan, T.M.3    Samuel, S.K.4    Davie, J.R.5    Fuqua, S.A.6
  • 26
    • 0034463079 scopus 로고    scopus 로고
    • Tamoxifen-bound estrogen receptor (ER) strongly interacts with the nuclear matrix protein HET/SAF-B, a novel inhibitor of ER-mediated transactivation
    • Oesterreich, S., Zhang, Q., Hopp, T., Fuqua, S. A., Michaelis, M., Zhao, H. H., Davie, J. R., Osborne, C. K. and Lee, A. V. (2000). Tamoxifen-bound estrogen receptor (ER) strongly interacts with the nuclear matrix protein HET/SAF-B, a novel inhibitor of ER-mediated transactivation. Mol. Endocrinol. 14, 369-381.
    • (2000) Mol. Endocrinol. , vol.14 , pp. 369-381
    • Oesterreich, S.1    Zhang, Q.2    Hopp, T.3    Fuqua, S.A.4    Michaelis, M.5    Zhao, H.H.6    Davie, J.R.7    Osborne, C.K.8    Lee, A.V.9
  • 27
    • 27944488662 scopus 로고    scopus 로고
    • Use of RNA interference to dissect the roles of trans-acting factors in alternative pre-mRNA splicing
    • Park, J. W. and Graveley, B. R. (2005). Use of RNA interference to dissect the roles of trans-acting factors in alternative pre-mRNA splicing. Methods 37, 341-344.
    • (2005) Methods , vol.37 , pp. 341-344
    • Park, J.W.1    Graveley, B.R.2
  • 28
    • 0026527447 scopus 로고
    • Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm
    • Pinol-Roma, S. and Dreyfuss, G. (1992). Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm. Nature 355, 730-732.
    • (1992) Nature , vol.355 , pp. 730-732
    • Pinol-Roma, S.1    Dreyfuss, G.2
  • 29
    • 0036674269 scopus 로고    scopus 로고
    • Large-scale proteomic analysis of the human spliceosome
    • Rappsilber, J., Ryder, U., Lamond, A. I. and Mann, M. (2002). Large-scale proteomic analysis of the human spliceosome. Genome Res. 12, 1231-1245.
    • (2002) Genome Res. , vol.12 , pp. 1231-1245
    • Rappsilber, J.1    Ryder, U.2    Lamond, A.I.3    Mann, M.4
  • 30
    • 0029918905 scopus 로고    scopus 로고
    • Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S /MAR-DNA
    • Renz, A. and Fackelmayer, F. O. (1996). Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S/MAR-DNA. Nucleic Acids Res. 24, 843-849.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 843-849
    • Renz, A.1    Fackelmayer, F.O.2
  • 31
    • 26944489645 scopus 로고    scopus 로고
    • Building specificity with nonspecific RNA-binding proteins
    • Singh, R. and Valcarcel, J. (2005). Building specificity with nonspecific RNA-binding proteins. Nat. Struct. Mol. Biol. 12, 645-653.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 645-653
    • Singh, R.1    Valcarcel, J.2
  • 34
    • 0036798006 scopus 로고    scopus 로고
    • Signals and their transduction pathways regulating alternative splicing: A new dimension of the human genome
    • Stamm, S. (2002). Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome. Hum. Mol. Genet. 11, 2409-2416.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2409-2416
    • Stamm, S.1
  • 35
    • 1542359466 scopus 로고    scopus 로고
    • Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA
    • Stoilov, P., Daoud, R., Nayler, O. and Stamm, S. (2004). Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum. Mol. Genet. 13, 509-524.
    • (2004) Hum. Mol. Genet. , vol.13 , pp. 509-524
    • Stoilov, P.1    Daoud, R.2    Nayler, O.3    Stamm, S.4
  • 36
  • 37
    • 4444308970 scopus 로고    scopus 로고
    • P59(fyn)-mediated phosphorylation regulates the activity of the tissue-specific splicing factor rSLM-1
    • Stoss, O., Novoyatleva, T., Gencheva, M., Olbrich, M., Benderska, N. and Stamm, S. (2004). p59(fyn)-mediated phosphorylation regulates the activity of the tissue-specific splicing factor rSLM-1. Mol. Cell. Neurosci. 27, 8-21.
    • (2004) Mol. Cell. Neurosci. , vol.27 , pp. 8-21
    • Stoss, O.1    Novoyatleva, T.2    Gencheva, M.3    Olbrich, M.4    Benderska, N.5    Stamm, S.6
  • 38
    • 33745622860 scopus 로고    scopus 로고
    • Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription
    • Swinburne, I. A., Meyer, C. A., Liu, X. S., Silver, P. A. and Brodsky, A. S. (2006). Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription. Genome Res. 16, 912-921.
    • (2006) Genome Res. , vol.16 , pp. 912-921
    • Swinburne, I.A.1    Meyer, C.A.2    Liu, X.S.3    Silver, P.A.4    Brodsky, A.S.5
  • 41
    • 2942711582 scopus 로고    scopus 로고
    • Structure-function analysis of the estrogen receptor alpha corepressor scaffold attachment factor-B1: Identification of a potent transcriptional repression domain
    • Townson, S. M., Kang, K., Lee, A. V. and Oesterreich, S. (2004). Structure-function analysis of the estrogen receptor alpha corepressor scaffold attachment factor-B1: identification of a potent transcriptional repression domain. J. Biol. Chem. 279, 26074-26081.
    • (2004) J. Biol. Chem. , vol.279 , pp. 26074-26081
    • Townson, S.M.1    Kang, K.2    Lee, A.V.3    Oesterreich, S.4
  • 42
    • 0037462794 scopus 로고    scopus 로고
    • The tight junction protein ZO-2 localizes to the nucleus and interacts with the heterogeneous nuclear ribonucleoprotein scaffold attachment factor-B
    • Traweger, A., Fuchs, R., Krizbai, I. A., Weiger, T. M., Bauer, H. C. and Bauer, H. (2003). The tight junction protein ZO-2 localizes to the nucleus and interacts with the heterogeneous nuclear ribonucleoprotein scaffold attachment factor-B. J. Biol. Chem. 278, 2692-2700.
    • (2003) J. Biol. Chem. , vol.278 , pp. 2692-2700
    • Traweger, A.1    Fuchs, R.2    Krizbai, I.A.3    Weiger, T.M.4    Bauer, H.C.5    Bauer, H.6
  • 46
    • 26444575502 scopus 로고    scopus 로고
    • Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon
    • Venables, J. P., Bourgeois, C. F., Dalgliesh, C., Kister, L., Stevenin, J. and Elliott, D. J. (2005). Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum. Mol. Genet. 14, 2289-2303.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 2289-2303
    • Venables, J.P.1    Bourgeois, C.F.2    Dalgliesh, C.3    Kister, L.4    Stevenin, J.5    Elliott, D.J.6
  • 47
    • 0033015180 scopus 로고    scopus 로고
    • A novel hnRNP protein (HAP/SAF-B) enters a subset of hnRNP complexes and relocates in nuclear granules in response to heat shock
    • Weighardt, F., Cobianchi, F., Cartegni, L., Chiodi, I., Villa, A., Riva, S. and Biamonti, G. (1999). A novel hnRNP protein (HAP/SAF-B) enters a subset of hnRNP complexes and relocates in nuclear granules in response to heat shock. J. Cell Sci. 112, 1465-1476.
    • (1999) J. Cell Sci. , vol.112 , pp. 1465-1476
    • Weighardt, F.1    Cobianchi, F.2    Cartegni, L.3    Chiodi, I.4    Villa, A.5    Riva, S.6    Biamonti, G.7
  • 48
    • 0030909002 scopus 로고    scopus 로고
    • Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity
    • Zeng, C., Kim, E., Warren, S. L. and Berget, S. M. (1997). Dynamic relocation of transcription and splicing factors dependent upon transcriptional activity. EMBO J. 16, 1401-1412.
    • (1997) EMBO J. , vol.16 , pp. 1401-1412
    • Zeng, C.1    Kim, E.2    Warren, S.L.3    Berget, S.M.4


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