Cryptic behaviours, inverse genetic landscapes, and spatial avoidance of inbreeding in the Pacific jumping mouse

Molecular Ecology

Volumn 16, Issue 4, 2007, Pages 853-866

  Vignieri, Sacha N ^a,b,c  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF SUSSEX   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Dispersal; Genetic landscapes; Inbreeding; Mating system; Parentage; Zapus trinotatus

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ANIMAL BEHAVIOR; ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENETICS; INBREEDING; MALE; PHYSIOLOGY; POPULATION GENETICS; RODENT; SEX DIFFERENCE; SEXUAL BEHAVIOR; UNITED STATES;

ANIMALS; FEMALE; GENETICS, POPULATION; HOMING BEHAVIOR; INBREEDING; LINKAGE DISEQUILIBRIUM; MALE; MICROSATELLITE REPEATS; MODELS, GENETIC; RODENTIA; SEX FACTORS; SEXUAL BEHAVIOR, ANIMAL; WASHINGTON;

ZAPUS TRINOTATUS;

EID: 33846929692     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.03182.x     Document Type: Article

References (75)

1. Andersen LW, Fog K, Damgaard C (2004) Habitat fragmentation causes bottlenecks and inbreeding in the European tree frog (Hyla arborea). Proceedings of the Royal Society of London. Series B, Biological Sciences, 271, 1293-1302.
2. Bailey V (1936) The mammals and life zones of Oregon. North American Fauna, 55, 1-416.
3. Brandt CA (1992) Social factors in immigration and emigration. In: Animal Dispersal: Small Mammals as a Model. Chapman & Hall, London.
4. Burland TM, Barratt EM, Nichols RA, Racey PA (2001) Mating patterns, relatedness and the basis of natal philopatry in the brown long-eared bat, Plecotus auritus. Molecular Ecology, 10, 1309-1321.
5. Chapuisat M, Goudet J, Keller L (1997) Microsatellites reveal high population viscosity and limited dispersal in the ant Formica paralugubris. Evolution, 51, 475-482.
6. Clobert JE, Danchin E, Dhondt AA, Nichols JD (2001) Dispersal. Oxford University Press, New York.
7. Crnokrak P, Roff DA (1999) Inbreeding depression in the wild. Heredity, 83, 260-270.
8. Crow JF, Kimura M (1970) An Introduction to Population Genetics Theory. Harper & Row, New York.
9. Darvill B, Ellis JS, Lye GC, Goulson D (2006) Population structure and inbreeding in a rare and declining bumblebee, Bombus muscorum (Hymenoptera: Apidae). Molecular Ecology, 15, 601-611.
10. Dieckmann U, O'Hara B, Weisser W (1999) The evolutionary ecology of dispersal. Trends in Ecology & Evolution, 14, 88-90.
11. Dobson FS (1982) Competition for mates and predominant male dispersal in mammals. Animal Behaviour, 30, 1183-1192.
12. Dobson FS (1994) Measures of gene flow in the Columbian ground-squirrel. Oecologia, 100, 190-195.
13. Dobson FS, Chesser RK, Hoogland JL, Sugg DW, Foltz DW (1997) Do black-tailed prairie dogs minimize inbreeding? Evolution, 51, 970-978.
14. Double MC, Peakall R, Beck NR, Cockburn A (2005) Dispersal, philopatry, and infidelity: dissecting local genetic structure in superb fairy-wrens (Maurus cyaneus). Evolution, 59, 625-635.
15. Edson JM (1932) Hibernation of the northwest jumping mouse. Murrelet, 13, 55-56.
16. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant-populations. Heredity, 72, 250-259.
17. Epperson BK, Li T-Q (1997) Gene dispersal and spatial genetic structure. Evolution, 51, 672-681.
18. Flahaut MR (1939) Unusual location of hibernating jumping mice. Murrelet, 20, 17-18.
19. Foerster K, Delhey K, Johnsen A, Lifjeld JT, Kempenaers B (2003) Females increase offspring heterozygosity and fitness through extra-pair matings. Nature, 425, 714-717.
20. Gerlach G (1996) Emigration mechanisms in feral house mice - a laboratory investigation of the influence of social structure, population density, and aggression. Behavioral Ecology and Sociobiology, 39, 159-170.
21. Goossens B, Graziani L, Waits LP et al. (1998) Extra-pair paternity in the monogamous alpine marmot revealed by nuclear DNA microsatellite analysis. Behavioral Ecology and Sociobiology, 43, 281-288.
22. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices, http://www.unil.ch/izea/softwares/ fstat.html.
23. Greenwood PJ (1980) Mating systems, philopatry, and dispersal in birds and mammals. Animal Behaviour, 28, 1140-1162.
24. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
25. Hansson B, Bensch S, Hasselquist D, Nielsen B (2002) Restricted dispersal in a long-distance migrant bird with a patchy distribution, the great reed warbler. Oecologia, 130, 536-542.
26. Hood GM (2000) POPTOOLS: software for the analysis of ecological models, http://www.cse.csiro.au/poptools.
27. Hoogland JL (1982) Prairie dogs avoid extreme inbreeding. Science, 215, 1639-1641.
28. Jansson N, Uller T, Olsson M (2005) Female dragons, Ctenophorus pictus, do not prefer scent from unrelated males. Australian Journal of Zoology, 53, 279-282.
29. Kawamura K (2005) Low genetic variation and inbreeding depression in small isolated populations of the Japanese rosy bitterling, Rhodeus ocellatus kurumeus. Zoological Science, 22, 517-524.
30. Keane B, Creel SR, Waser PM (1996) No evidence of inbreeding avoidance or inbreeding depression in a social carnivore. Behavioral Ecology, 7, 480-489.
31. Keller LF, Arcese P, Smith JNM, Hochachka WM, Stearns SC (1994) Selection against inbred song sparrows during a natural-population bottleneck. Nature, 372, 356-357.
32. Keller LF, Waller DM (2002) Inbreeding effects in wild populations. Trends in Ecology & Evolution, 17, 230-241.
33. Kerth G, Mayer F, Petit E (2002) Extreme sex-biased dispersal in the communally breeding, nonmigratory Bechstein's bat (Myotis bechsteinii). Molecular Ecology, 11, 1491-1498.
34. Koenig WD, VanVuren D, Hooge PN (1996) Detectability, philopatry, and the distribution of dispersal distances in vertebrates. Trends in Ecology & Evolution, 11, 514-517.
35. Lampert KP, Bernal XE, Rand AS, Mueller UG, Ryan MJ (2006) No evidence for female mate choice based on genetic similarity in the Tungara frog Physalaemus pustulosus. Behavioral Ecology and Sociobiology, 59, 796-804.
36. Marshall TC, Slate JBKE, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639-655.
37. Maser C, Mate BR, Franklin JF, Dyrness CT (1981) Natural history of Oregon coast mammals, pp. 1-476. US Department of Agriculture, Forest Service.
38. Miller MP (2005) Alleles in space (AIS): computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity, 96, 722-724.
39. Miller MP, Bellinger MR, Forsman ED, Haig SM (2006) Effects of historical climate change, habitat connectivity, and vicariance on genetic structure and diversity across the range of the red tree vole (Phenacomys longicaudus) in the Pacific Northwestern United States. Molecular Ecology, 15, 145-159.
40. Mossman CA, Waser PM (1999) Genetic detection of sex-biased dispersal. Molecular Ecology, 8, 1063-1067.
41. Nei M (1983) Genetic diversity and the neutral mutation theory. Heredity, 51, 531-531.
42. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
43. Neigel JE (1997) A comparison of alternative strategies for estimating gene flow from genetic markers. Annual Review of Ecology and Systematics, 28, 105-128.
44. Newman D, Pilson D (1997) Increased probability of extinction due to decreased genetic effective population size: experimental populations of Clarkia pulchella. Evolution, 51, 354-362.
45. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology 4, 347-354.
46. Paetkau D, Shields GF, Strobeck C (1998) Gene flow between insular, coastal and interior populations of brown bears in Alaska. Molecular Ecology, 7, 1283-1292.
47. Paetkau D, Slade R, Burden M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65.
48. Peacock MM (1997) Determining natal dispersal patterns in a population of North American pikas (Ochotona princeps) using direct mark-resight and indirect genetic methods. Behavioral Ecology, 8, 340-350.
49. Peacock MM, Smith AT (1997) Nonrandom mating in pikas Ochotona princeps: evidence for inbreeding between individuals of intermediate relatedness. Molecular Ecology, 6, 801-811.
50. Peakall R, Ruibal M, Lindenmayer DB (2003) Spatial autocorrelation analysis offers new insights into gene flow in the Australian bush rat, Rattus fuscipes. Evolution, 57, 1182-1195.
51. Peakall R, Smouse PE (2005) GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. The Australian National University, Canberra.
52. Piry S, Alapetite A, Cornuet JM et al. (2004) GENECLASS 2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity, 95, 536-539.
53. Proctor MF, McLellan BN, Strobeck C, Barclay RMR (2004) Gender-specific dispersal distances of grizzly bears estimated by genetic analysis. Canadian Journal of Zoology-Revue Canadienne de Zoologie, 82, 1108-1118.
54. Queller DC, Goodnight KF (1989) Estimating relatedness using genetic-markers. Evolution, 43, 258-275.
55. Raymond M, Rousset F (1995) GENEPOP (version-1.2) - population-genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
56. Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conservation Biology, 17, 230-237.
57. Richardson DS, Komdeur J, Burke T (2004) Inbreeding in the Seychelles warbler: environment-dependent maternal effects. Evolution, 58, 2037-2048.
58. Saccheri I, Kuussaari M, Kankare M et al. (1998) Inbreeding and extinction in a butterfly metapopulation. Nature, 392, 491-494.
59. Schulte-Hostedde AI, Gibbs HL, Millar JS (2001) Microgeographic genetic structure in the yellow-pine chipmunk (Tamias amoenus). Molecular Ecology, 10, 1625-1631.
60. Shields WM (1987) Dispersal and mating systems: investigating their causal connections. In: Mammalian Dispersal Patterns: The Effects of Social Structure on Population Genetics (eds Chepko-Sade BD, Halping ZT). University of Chicago Press, Chicago, Illinois.
61. Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity, 82, 561-573.
62. Stow AJ, Sunnucks P (2004) Inbreeding avoidance in Cunningham's skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology, 13, 443-447.
63. Sumner J, Rousset F, Estoup A, Moritz C (2001) 'Neighbourhood' size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods. Molecular Ecology, 10, 1917-1927.
64. Tallmon DA, Luikart G, Waples RS (2004) The alluring simplicity and complex reality of genetic rescue. Trends in Ecology & Evolution, 19, 489-496.
65. Tregenza T, Wedell N (2002) Polyandrous females avoid costs of inbreeding. Nature, 415, 71-73.
66. Vignieri SN (2003) Isolation and characterization of eight highly variable microsatellite markers in the Pacific jumping mouse (Zapus trinotatus). Molecular Ecology Notes, 3, 638-640.
67. Vignieri SN (2005) Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus). Molecular Ecology, 14, 1925-1937.
68. Vucetich JA, Waite TA (1999) Erosion of heterozygosity in fluctuating populations. Conservation Biology, 13, 860-868.
69. Waser PM, Elliott LF (1991) Dispersal and genetic-structure in kangaroo rats. Evolution, 45, 935-943.
70. Watson DF, Philip GM (1985) A refinement of inverse distance weighted interpolation. Geo-Processing, 2, 315-327.
71. Watson DF (1992) Contouring: a guide to the analysis and display of spatial data. New York, Pergamon Press.
72. Wilson EO (1975) Sociobiology: the New Synthesis. Belknap Press, Cambridge, UK.
73. Winters JB, Waser PM (2003) Gene dispersal and outbreeding in a philopatric mammal. Molecular Ecology, 12, 2251-2259.
74. Wright S (1943) Isolation by distance. Genetics, 28, 114-138.
75. Wright S (1978) Evolution and the Genetics of Populations. University of Chicago Press, Chicago.