Diffusion tensor imaging segmentation of white matter structures using a Reproducible Objective Quantification Scheme (ROQS)

NeuroImage

Volumn 35, Issue 1, 2007, Pages 166-174

  Niogi, Sumit N ^a   Mukherjee, Pratik ^b   McCandliss, Bruce D ^a  

^a WEILL CORNELL MEDICAL COLLEGE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ALGORITHM; ANISOTROPY; ARTICLE; AUTOMATION; BRAIN REGION; CORPUS CALLOSUM; CORRELATION COEFFICIENT; DIFFUSION TENSOR IMAGING; HUMAN; METHODOLOGY; NORMAL HUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; REPRODUCIBLE OBJECTIVE QUANTIFICATION SCHEME; TECHNIQUE; VOLUNTEER; WHITE MATTER;

ADULT; ALGORITHMS; ANISOTROPY; BRAIN; CORPUS CALLOSUM; DATABASES, FACTUAL; DIFFUSION MAGNETIC RESONANCE IMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; OBSERVER VARIATION; REFERENCE VALUES; REPRODUCIBILITY OF RESULTS;

EID: 33846926345     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.10.040     Document Type: Article

References (36)

1. Arfanakis K., Haughton V.M., Carew J.D., Baxter P.R., Dempsey R.J., and Meyerand M.E. Diffusion tensor MR imaging in diffuse axonal injury. AJNR Am. J. Neuroradiol. 23 (2002) 794-802
2. Ashburner J., and Friston K.J. Voxel-based morphometry-The methods. NeuroImage 11 6 Pt 1 (2001) 805-821
3. Ashton E.A., Takahashi C., Berg M.J., Goodman A., Totterman S., and Ekholm S. Accuracy and reproducibility of manual and semiautomated quantification of ms lesions by MRI. JMRI 17 (2003) 300-308
4. Basser P.J., Mattiello J., and LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 66 1 (1994) 259-267
5. Bueno G., Musse O., Heitz F., and Armspach J.P. Three-dimensional segmentation of anatomical structures in MR images on large data bases. Magn. Reson. Imaging 19 (2001) 73-88
6. Ciccarelli O., Toosy A.T., Parker G.J.M., Wheeler-Kingshott C.A.M., Barker G.J., Miller D.H., and Thompson A.J. Diffusion tractography based group mapping of major white-matter pathways in the human brain. NeuroImage 19 (2003) 1545-1555
7. Eriksson S.H.m., rug-Gunn F.J., Symms M.R., Barker G.J., and Duncan J.S. Diffusion tensor imaging in patients with epilepsy and malformations of cortical development. Brain 124 Pt3 (2001) 617-626
8. Friston K.F. Commentary and opinion: II. Statistical parametric mapping: ontology and current issues. J. Cereb. Blood Flow Metab. 15 3 (1995) 361-370
9. Good C.D., Johnsrude I., Ashburner J., Henson R.N., Friston K.J., and Frackowiak R.S. Cerebral asymmetry and the effects of sex and handedness on brain structure: a voxel-based morphometric analysis of 465 normal adult human brains. NeuroImage 14 3 (2001) 685-700
10. Grenander U., and Miller M. Computational anatomy: an emerging discipline. Q. Appl. Math. 56 4 (1998) 617-694
11. Huisman T.A., Sorensen A.G., Hergan K., Gonzalez R.G., and Schaefer P.W. Diffusion-weighted imaging for the evaluation of diffuse axonal injury in closed head injury. J. Comput. Assist. Tomogr. 27 1 (2003) 5-11
12. Huisman T.A., Schwamm L.H., Schaefer P.W., Koroshetz W.J., Shetty-Alva N., Ozsunar Y., Wu O., and Sorensen A.G. Diffusion tensor imaging as potential biomarker of white matter injury in diffuse axonal injury. AJNR Am. J. Neuroradiol. 25 3 (2004) 370-376
13. Jones D.K., Symms M.R., Cercignani M., and Howard R.J. The effect of filter size on VBM analyses of DT-MRI data. NeuroImage 26 2 (2005) 546-554 (Jun)
14. Kubicki M., Westin C.F., Maier S.E., Frumin M., Nestor P.G., Salisbury D.F., Kikinis R., Jolesz F.A., McCarley R.W., and Shenton M.E. Uncinate fasciculus findings in schizophrenia: a magnetic resonance diffusion tensor imaging study. Am. J. Psychiatry 159 5 (2002) 813-820
15. Lee C., Huh S., Ketter T.A., and Unser M. Automated segmentation of the corpus callosum in midsagittal brain magnetic resonance images. Opt. Eng. 39 4 (2000) 924-935
16. Lee Z.I., Byun W.M., Jang S.H., Ahn S.H., Moon H.K., and Chang Y. Diffusion tensor magnetic resonance imaging of microstructural abnormalities in children with brain injury. Am. J. Phys. Med. Rehabil. 82 7 (2003) 556-559
17. Lin C., Sun S., Hong C., and Chang C. Unsupervised identification of white matter tracts in a mouse brain using a directional correlation-based region growing (DCRG) algorithm. NeuroImage 28 2 (2005) 380-388
18. Lundervold A., Taxt T., Duta N., and Jain A.K. Model-guided segmentation of corpus callosum in MR images. Proceedings of IEEE on CPVR (1999) 231-237
19. Mazziotta J.C., Toga A.W., Evans A., Fox P., and Lancaster J. A probabilistic atlas of the human brain: theory and rationale for its development. The International Consortium for Brain Mapping (ICBM). NeuroImage 2 2 (1995) 89-101
20. Mukherjee P., Bahn M.M., McKinstry R.C., Shimony J.S., Cull T.S., Akbudak E., Snyder A.Z., and Conturo T.E. Differences between gray matter and white matter water diffusion in stroke: diffusion-tensor MR imaging in 12 patients. Radiology 215 1 (2000) 211-220
21. Mukherjee P., Miller J.H., Shimony J.S., Conturo T.E., Lee B.C., Almli C.R., and McKinstry R.C. Normal brain maturation during childhood: developmental trends characterized with diffusion-tensor MR imaging. Radiology 221 2 (2001) 349-358
22. Niogi S.N., and McCandliss B.D. Left lateralized white matter microstructure accounts for individual differences in reading ability and disability. Neuropsychologia 44 11 (2006) 2178-2188
23. Peled S., Gudbjartsson H., Westin C.F., Kikinis R., and Jolesz F.A. Magnetic resonance imaging shows orientation and asymmetry of white matter fiber tracts. Brain Res. 780 1 (1998) 27-33
24. Pierpaoli C., Jezzard P., Basser P.J., Barnett A., and Di Chiro G. Diffusion tensor MR imaging of the human brain. Radiology 201 3 (1996) 637-648
25. Quarantelli M., Larobina M., Volpe U., Amati G., Tedeschi E., Ciarmiello A., Brunetti A., Galderisi S., and Alfano B. Stereotaxy-based regional brain volumetry applied to segmented MRI: validation and results in deficit and nondeficit schizophrenia. NeuroImage 17 (2002) 373-384
26. Rugg-Gunn F.J., Eriksson S.H., Symms M.R., Barker G.J., and Duncan J.S. Diffusion tensor imaging of cryptogenic and acquired partial epilepsies. Brain 124 Pt3 (2001) 627-636
27. Thompson P.M., and Toga A.W. Detectino, visualization and animation of abnormal anatomic structure with a deformable probabilistic brain atlas based on random vector field transformations. Med. Image Anal. 1 4 (1997) 271-294
28. Tisserand D.J., Pruessner J.C., Arigita E.J.S., van Boxtel M.P.J., Evans A.C., Jolles J., and Uylings H.B.M. Regional frontal cortical volumes decrease differentially in aging: an MRI study to compare volumetric approaches and voxel-based morphometry. NeuroImage 17 (2002) 657-669
29. Ulug A., and van Zijl P.C. Orientation-independent diffusion imaging without tensor diaonalization: anisotropy definitions based on physical attributes of the diffusion ellipsoid. J. Magn. Reson. Imaging 9 6 (1999) 804-813
30. Virta A., Barnett A., and Pierpaoli C. Visualizing and characterizing white matter fiber structure and architecture in the human pyramidal tract using diffusion tensor MRI. Magn. Reson. Imaging 17 (1999) 1121-1133
31. Wakana S., Jiang H., Nagae-Poetscher L.M., vanZijl P., and Mori S. Fiber tract-based atlas of human white matter anatomy. Radiology 230 1 (2004) 77-87
32. Wakana S., Nagae-Poetscher L.M., Jiang H., van Zijl P., Golay X., and Mori S. Macroscopic orientation component analysis of brain white matter and thalamus based on diffusion tensor imaging. Magn. Reson. Med. 53 (2005) 649-657
33. Watkins K.E., Paus T., Lerch J.P., Zijdenbos A., Collins D.L., Neelin P., Taylor J., Worsley K.J., and Evans A.C. Structural asymmetries in the human brain: a voxel-based statistical analysis of 142 MRI scans. Cereb. Cortex 11 (2001) 868-877
34. Watts R., Liston C., Niogi S., and Ulug A. Fiber tracking using magnetic resonance diffusion tensor imaging and its applications to human brain development. Dev. Disabil. Res. 9 (2003) 168-177
35. Werring D.J., Clark C.A., Barker G.J., Thompson A.J., and Miller D.H. Diffusion tensor imaging of lesions and normal-appearing white matter in multiple sclerosis. Neurology 52 (1999) 1626-1632
36. Wu C.H., and Horng S.J. Run-length chain coding and scalable computation of a shape's moments using reconfigurable optical buses. IEEE Trans. Syst. Man Cybern., B Cybern. 34 2 (2004) 845-855