Genetic variations in rice in vitro cultures at the EPSPs-RPS20 region

Theoretical and Applied Genetics

Volumn 114, Issue 4, 2007, Pages 705-711

  Noro, Yuji ^a   Takano Shimizu, Toshiyuki ^b,c   Syono, Kunihiko ^d   Kishima, Yuji ^a   Sano, Yoshio ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

^d JAPAN WOMEN'S UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CULTIVATION; GENETIC ENGINEERING; PLANT CELL CULTURE; PLANTS (BOTANY);

CELL LINES; EXONS; NUCLEOTIDE SUBSTITUTIONS;

GRAIN (AGRICULTURAL PRODUCT);

PRIMER DNA;

ARTICLE; COMPARATIVE STUDY; DNA SEQUENCE; GENE; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; RICE; SPECIES DIFFERENCE;

BASE SEQUENCE; DNA PRIMERS; GENES, PLANT; MOLECULAR SEQUENCE DATA; MUTATION; ORYZA SATIVA; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VARIATION (GENETICS);

CELLS; CULTIVATION; GENETIC ENGINEERING; GRAIN; PLANTS;

JAPONICA; ORYZA;

EID: 33846839502     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0470-4     Document Type: Article

References (34)

1. Baba A, Hasezawa S, Syono K (1986) Cultivation of rice protoplasts and their transformation mediated by agrobacterium spheroplasts. Plant Cell Physiol 27:463-471
2. Brettell RIS, Dennis ES, Scowcroft WR, Peacock WJ (1986) Molecular analysis of a somaclonal mutant of maize alcohol-dehydrogenase. Mol Gen Genet 202:235-239
3. Chen CC, Chen CM (1980) Changes in chromosome-number in microspore callus of rice during successive subcultures. Can J Genet Cytol 22:607-614
4. Courtial B, Feuerbach F, Eberhard S, Rohmer L, Chiapello H, Camilleri C, Lucas H (2001) Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes. Mol Genet Genomics 265:32-42
5. Dennis ES, Brettell RIS, Peacock WJ (1987) A tissue culture induced Adh1 null mutant of maize results from a single base change. Mol Gen Genet 210:181-183
6. Filkowski J, Besplug J, Burke P, Kovalchuk I, Kovalchuk O (2003) Genotoxicity of 2,4-D and dicamba revealed by transgenic Arabidopsis thaliana plants harboring recombination and point mutation markers. Mutat Res-Gen Tox En 542:23-32
7. Freese E (1959) The specific mutagenic effect of base analogues on phage T4. J Mol Biol 1:87-105
8. Furukawa T, Syono K (1998) Increased production of IAA by Rhizoctonia solani is induced by culture filtrate from rice suspension cultures. Plant Cell Physiol 39:43-48
9. Gonzalez M, Soloneski S, Reigosa MA, Larramendy ML (2005) Genotoxicity of the herbicide 2,4-dichlorophenoxyacetic and a commercial formulation, 2,4-dichlorophenoxyacetic acid dimethylamine salt. I. Evaluation of DNA damage and cytogenetic endpoints in chinese hamster ovary (CHO) cells. Toxicol In Vitro 19:289-297
10. Goodman MF, Hopkins RL, Lasken R, Mhaskar DN (1985) The biochemical basis of 5-bromouracil- and 2-aminopurine-induced mutagenesis. Basic Life Sci 31:409-423
11. Hirochika H (1993) Activation of tobacco retrotransposons during tissue-culture. EMBO J 12:2521-2528
12. Hirochika H (1997) Retrotransposons of rice: their regulation and use for genome analysis. Plant Mol Biol 35:231-240
13. Hirochika H, Sugimoto K, Otsuki Y, Tsugawa H, Kanda M (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci USA 93:7783-7788
14. Ina Y (1995) New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J Mol Evol 40:190-226
15. Jiang N, Bao ZR, Zhang XY, Hirochika H, Eddy SR, McCouch SR, Wessler SR (2003) An active DNA transposon family in rice. Nature 421:163-167
16. Kobayashi S, Noro Y, Nagano H, Yoshida KT, Takano-Shimizu T, Kishima Y, Sano Y (2005) Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer. Gene 346:231-240
17. Komatsu M, Shimamoto K, Kyozuka J (2003) Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma. Plant Cell 15:1934-1944
18. Larkin PJ, Scowcroft WR (1981) Somaclonal variation - a novel source of variability from cell-cultures for plant improvement. Theor Appl Genet 60:197-214
19. Larkin PJ, Ryan SA, Brettell RIS, Scowcroft WR (1984) Heritable somaclonal variation in wheat. Theor Appl Genet 67:443-455
20. Larkin PJ, Banks PM, Bhati R, Brettell RIS, Davies PA, Ryan SA, Scowcroft WR, Spindler LH, Tanner GJ (1989) From somatic variation to variant plants - mechanisms and applications. Genome 31:705-711
21. Lasken RS, Goodman MF (1984) The biochemical basis of 5-bromouracil-induced mutagenesis. Heteroduplex base mispairs involving bromouracil in G x C-A x T and A x T-G x C mutational pathways. J Biol Chem 259:11491-11495
22. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473-497
23. Murray MG, Thompson WF (1980) Rapid isolation of high molecular-weight plant DNA. Nucleic Acids Res 8:4321-4325
24. Nagano H, Kunii M, Azuma T, Kishima Y, Sano Y (2002) Characterization of the repetitive sequences in a 200-kb region around the rice waxy locus: diversity of transposable elements and presence of veiled repetitive sequences. Genes Genet Syst 77:69-79
25. Nishi R, Hashimoto H, Uchimiya H, Kato A (1993) The primary structure of 2 proteins from the small ribosomal-subunit of rice. Biochim Biophys Acta 1216:113-114
26. Ogura H (1990) Chromosome variation in plant tissue culture. In: Bajaj YPS (ed) Biotechnology in agriculture and forestry 11. Somaclonal variation in crop improvement I. Springer, Berlin Heidelberg New York, pp 49-84
27. Ozeki Y, Davies E, Takeda J (1997) Somatic variation during long term subculturing of plant cells caused by insertion of a transposable element in a phenylalanine ammonia-lyase (PAL) gene. Mol Gen Genet 254:407-416
28. Phillips RL, Kaeppler SM, Olhoft P (1994) Genetic instability of plant-tissue cultures - breakdown of normal controls. Proc Natl Acad Sci USA 91:5222-5226
29. Sato T, Wu LH, Nagano H, Kishima Y, Sano Y (1999) Rice EPSP synthase gene resides 45-kb downstream of the waxy gene. Rice Genet Newsl 16:108-110
30. Sokal RR, Rohlf FJ (1995) Biometry: the principles and practice of statistics in biological research. W.H. Freeman, New York, xix, 887 pp
31. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
32. Trautner TA, Swartz MN, Kornberg A (1962) Enzymatic synthesis of deoxyribonucleic acid. X. Influence of bromouracil substitutions on replication. Proc Natl Acad Sci USA 48:449-455
33. Tripathy NK, Routray PK, Sahu GP, Kumar AA (1993) Genotoxicity of 2,4-dichlorophenoxyacetic acid tested in somatic and germ-line cells of Drosophila. Mutat Res 319:237-242
34. Watanabe SM, Goodman MF (1981) On the molecular basis of transition mutations: frequencies of forming 2-aminopurine·cytosine and adenine·cytosine base mispairs in vitro. Proc Natl Acad Sci USA 78:2864-2868