Computational analysis of rice (Oryza sativa L.) panicle topology and ripening

Seed Science Research

Volumn 16, Issue 4, 2006, Pages 243-250

  Hay, Jordan O ^a   Spanswick, Roger M ^a  

^a Department of Biological and Environmental Engineering   (United States)

Author keywords

Caryopsis; Computational analysis; Grain filling; Oryza sativa; Panicle architecture; Panicle topology; Rice

Indexed keywords

CARYOPSIS; ORYZA SATIVA;

EID: 33846807315     PISSN: 09602585     EISSN: None     Source Type: Journal    
DOI: 10.1017/SSR2006257     Document Type: Article

References (24)

1. Chino, M., Hayashi, H. and Fukumorita, T. (1987) Chemical composition of rice phloem sap and its fluctuation. Journal of Plant Nutrition 10, 1651-1661.
2. Fukumorita, T. and Chino, M. (1982) Sugar, amino acid and inorganic contents in rice phloem sap. Plant and Cell Physiology 23, 273-283.
3. Furbank, R.T., Scofield, G.N., Hirose, T., Wang, X.D., Patrick, J.W. and Offler, C.E. (2001) Cellular localisation and function of a sucrose transporter OsSUT1 in developing rice grains. Australian Journal of Plant Physiology 28, 1187-1196.
4. Godin, C. (2000) Representing and encoding plant architecture: a review. Annals of Forest Science 57, 413-438.
5. Hay, J.O. (2005) Growth, architecture, cell separation, electrophysiology and sucrose transport of ripening rice caryopses. PhD dissertation, Cornell University, Ithaca, New York, USA.
6. Hay, J.O. and Spanswick, R.M. (2006) Mechanical and enzymatic separation of ripening rice (Oryza sativa L.) caryopsis tissues. Seed Science Research 16, 223-227.
7. Hirose, T., Imaizumi, N., Scofield, G.N., Furbank, R.T. and Ohsugi, R. (1997) cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.). Plant and Cell Physiology 38, 1389-1396.
8. Hirose, T., Takano, M. and Terao, T. (2002) Cell wall invertase in developing rice caryopsis: molecular cloning of OsCIN1 and analysis of its expression in relation to its role in grain filling. Plant and Cell Physiology 43, 452-459.
9. Hoshikawa, K. (1989) The growing rice plant: An anatomical monograph. Tokyo, Nobunkyo.
10. Hoshikawa, K. (1993) Anthesis, fertilization and development of caryopsis. pp. 339-376 in Matsuo, T.; Hoshikawa, K. (Eds) Science of the rice plant. Tokyo, Food and Agricultural Policy Research Center.
11. Ishimaru, T., Matsuda, T., Ohsugi, R. and Yamagishi, T. (2003) Morphological development of rice caryopses located at the different positions in a panicle from early to middle stage of grain filling. Functional Plant Biology 30, 1139-1149.
12. Ishimaru, T., Hirose, T., Matsuda, T., Goto, A., Takahashi, K., Sasaki, H., Terao, T., Ishii, R., Ohsugi, R. and Yamagishi, T. (2005) Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relationship to grain filling in rice (Oryza sativa L.): comparison of caryopses located at different positions in a panicle. Plant and Cell Physiology 46, 620-628.
13. Kobayasi, K. and Imaki, T. (1997) Varietal differences of rice in differentiation and degeneration of secondary rachisbranches and spikelets in terms of their nodal distribution on a rachis. Japanese Journal of Crop Science 66, 578-587.
14. Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J. (2001) The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. Developmental Biology 231, 364-373.
15. Matsushima, S. (1967) Crop science in rice: Theory of yield determination and its application. Tokyo, Fuji Publishing.
16. Mitra, S. and Bera, A.K. (2003) Influence of grain density on some qualitative characters of rice (Oryza sativa L.). Crop Research 25, 400-405.
17. Mohapatra, P.K., Patel, R. and Sahu, S.K. (1993) Time of flowering affects grain quality and spikelet partitioning within the rice panicle. Australian Journal of Plant Physiology 20, 231-241.
18. Oparka, K.J. and Gates, P. (1981a) Transport of assimilates in the developing caryopsis of rice (Oryza sativa L.): The pathways of water and assimilated carbon. Planta 152, 388-396.
19. Oparka, K.J. and Gates, P. (1981b) Transport of assimilates in the developing caryopsis of rice (Oryza sativa L.): Ultrastructure of the pericarp vascular bundle and its connections with the aleurone layer. Planta 151, 561-573.
20. Patel, R. and Mohapatra, P.K. (1996b) Assimilate partitioning within floret components of contrasting rice spikelets producing qualitatively different types of grains. Australian Journal of Plant Physiology 23, 85-92.
21. Scofield, G.N., Hirose, T., Gaudron, J.A., Upadhyaya, N.M., Ohsugi, R. and Furbank, R.T. (2002) Antisense suppression of the rice sucrose transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis. Functional Plant Biology 29, 815-826.
22. Takeoka, Y., Shimizu, M. and Wada, T. (1993) Panicles. pp. 295-338 in Matsuo, T.; Hoshikawa, K. (Eds) Science of the rice plant. Tokyo, Food and Agricultural Policy Research Center.
23. Tsukaguchi, T., Horie, T. and Koshioka, M. (1999) Dynamics of abscisic acid levels during grain-filling in rice: comparisons between superior and inferior spikelets. Plant Production Science 2, 223-226.
24. Xu, X.B. and Vergara, B.S. (1986) Morphological changes in rice panicle development: a review of literature. IRRI Research Paper Series 117, 1-13.