Genetic structure and phylogeography of the takin (Budorcas taxicolor) as inferred from mitochondrial DNA sequences

Canadian Journal of Zoology

Volumn 81, Issue 3, 2003, Pages 462-468

  Li, Ming ^a   Wei, Fuwen ^a   Groves, Pamela ^b   Feng, Zoujian ^a   Hu, Jinchu ^c  

^a INSTITUTE OF ZOOLOGY   (China)

^b UNIVERSITY OF ALASKA FAIRBANKS   (United States)

^c Sichuan Teachers College   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME; GENE FLOW; GENETIC STRUCTURE; GEOGRAPHICAL REGION; GOAT; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; POPULATION BOTTLENECK;

ASIA; CHINA; EURASIA; FAR EAST;

ANIMALIA; BUDORCAS TAXICOLOR;

EID: 33846668874     PISSN: 00084301     EISSN: None     Source Type: Journal    
DOI: 10.1139/z03-029     Document Type: Article

References (59)

1. Aquadro, C.F., and Greenberg, B.D. 1983. Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics, 103: 287-312.
2. Arctander, P., Kat, P.W., Aman, R.A., and Siegismund, H.R. 1996. Extreme genetic differences among populations of Gazella granti, Grant's gazelle in Kenya. Heredity, 76: 465-475.
3. Avise, J.C. 1989. Role of molecular genetics in recognition and conservation of endangered species. Trends Ecol. Evol. 4: 279-281.
4. Avise, J.C. 1994. Molecular markers, natural history and evolution. Chapman and Hall, New York.
5. Avise, J.C. 1998. The history and preview of phylogeography: a personal reflection. Mol. Ecol. 7: 371-379.
6. Avise, J.C. 2000. Phylogeography the history and formation of species. Harvard University Press, Cambridge, Mass.
7. Avise, J.C., Arnold, J., Ball, R.M., Berminham, E., Lamb, T., Neigel, J.E., Reeb, C.A., and Saunders, N.C. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18: 489-522.
8. Cooper, H.L. 1923. The Mishmi takin. J. Bombay Nat. Hist. Soc. 29: 550-551.
9. Di Rienzo, A., and Wilson, A.C. 1991. Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc. Natl. Acad. Sci. U.S.A. 88: 1597-1601.
10. Edwards, S.V. 1993. Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the grey-crowned babbler (Pomatostomus temporalis). Evolution, 47: 1118-1137.
11. Eizirik, E., Kim, J.H., Menotti-Raymond, M., Crawshaw, P.G., O'Brien, S.J., and Johnson, W.E. 2001. Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae). Ecol. Syst. 18: 489-522.
12. Escorza-Trevino, S., and Dizon, A.E. 2000. Phylogeography, intraspecific structure and sex-biased dispersal of Dall's Porpoise, Phocoennoides dalli, revealed by mitochondrial and microsatellite DNA analyses. Mol. Ecol. 9: 1049-1060.
13. Excoffier, L., Smouse, P.E., and Quattro, J.M. 1992. Analysis of molecular variance inferred from metric distance among DNA restriction data. Genetics, 131: 479-491.
14. Felsenstein, J. 1993. PHYLIP: phylogenetic inference package. Vers. 3.5p. Joseph Felsenstein and University of Washington, Seattle.
15. Gentry, A.W. 1992. The subfamilies and tribes of the family Bovidae. Mammal Rev. 22: 1-32.
16. Gray, D.R. 1987. The muskoxen of Polar Bear Pass. Fitzhenry and Whiteside, Markham, Ont.
17. Grimm, E.C., Jacobson, G.L., Watts, W.A., Hansen, B.C.S., and Maasch, K.A. 1993. A 50,000 year record of climatic oscillations from Florida and its temporal correlation with the Heinrich events. Science (Wash., D.C.), 261: 198-200.
18. Groves, P. 1997. Intraspecific variation in mitochondrial DNA of muskoxen, based on control-region sequences. Can. J. Zool. 75: 568-575.
19. Groves, P., and Shields, G.F. 1997. Cytochrome b sequences suggest convergent evolution of the Asian takin and Arctic muskox. Mol. Phylogenet. Evol. 8: 363-374.
20. Hassanin, A., Pasquet, E., and Vigne, J.D. 1998. Molecular systematics of the subfamily Caprinae (Artiodactyla, Bovidae) as determined from cytochrome b sequences. J. Mamm. Evol. 5: 217-236.
21. Hewitt, G.M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Linn. Soc. 58: 247-276.
22. Hewitt, G.M. 1999. Post-glacial re-colonization of European biota. Biol. J. Linn. Soc. 68: 87-112.
23. Hu, J.H., and Wei, F.W. 1993. Past and present of Sichuan Takin. In The successional changes of mammals in China under the influences of human activities. China Science & Technology Press, Beijing. pp. 115-117.
24. Jukes, T.H., and Cantor, C.R. 1969. Evolution of protein molecules. In Mammalian protein metabolism. Edited by H.N. Munro and J.B. Allison. Academic Press, New York. pp. 31-132.
25. Kimura, M. 1980. A simple method for estimating evolutionary area of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
26. Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X., and Wilson, A.C. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U.S.A. 86: 6196-6200.
27. Li, M., Liang, B., Tamate, H.B., and Feng, Z. 2001. Molecular phylogeny of Sichuan snub-nosed monkey (Rhinopithecus roxellae) with cytochrome b sequences. Primates, 42: 153-160.
28. Loftus, R.T., MacHugh, D.E., Bradley, D.G., and Sharp, P.M. 1994. Evidence for two independent domestications of cattle. Proc. Natl. Acad. Sci. U.S.A. 91: 2757-2761.
29. Moritz, C. 1994. Defining evolutionarily significant units for conservation. Trends Ecol. Evol. 8: 373-375.
30. Mouchaty, S.D., Cook, J.A., and Shields, G.F. 1995. Phylogenetic analysis of northern hair seals based on nucleotide sequences of the mitochondrial cytochrome b gene. J. Mammal. 76: 1178-1185.
31. Neas, J.F., and Hoffmann, R.S. 1987. Budorcas taxicolor. Mamm. Species, 277: 1-7.
32. Nei, M., Maruyama, T., and Chakraborty, R. 1975. The bottleneck effect and genetic variability. Evolution, 29: 1-10.
33. Pei, W.Z. 1957. The geographic distribution of Quaternary mammals in China. Acta Anthropol. Sinica, 11: 9-24.
34. Rao, G., Li, M., Niu, Y.D., Wang, J., and Wei, F.W. 2001. New method of DNA extraction from old skin samples. Chinese J. Zool. 36: 53-57.
35. Rozas, J., and Rozas, R. 1999. DnaSP Version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15: 174.
36. Ryder, O.A. 1986. Species conservation and systematics: the dilemma of subspecies. Trends Ecol. Evol. 1: 9-10.
37. Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
38. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
39. Schaller, G.B. 1977. Mountain monarchs. University of Chicago Press, Chicago.
40. Schaller, G.B. 1985. Talking of takins. Anim. Kingdom, 88: 22-29.
41. Schneider, S., Kueffer, J.M., Roessli, D., and Excoffier, L. 1997. ARLEQUIN 1.1. A software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
42. Selander, R.K., and Kaufman, D.W. 1973. Genetic variability and strategies of adaptation in animals. Proc. Natl. Acad. Sci. U.S.A. 70: 1875-1877.
43. Shields, G., and Kocher, T. 1991. Phylogenetic relationships of North American ursids based on analysis of mitochondrial DNA. Evolution, 45: 218-221.
44. Simpson, G.G. 1945. The principles of classification and a classification of mammals. Bull. Am. Mus. Nat. Hist. 85: 1-350.
45. Swofford, D.L. 1993. PAUP: phylogenetic analysis using parsimony. Vers. 3.1.1. Computer program distributed by the Illinois Natural History Survey, Champaign, Ill.
46. Taberlet, P., Fumagalli, L., and Wust-Saucy, A. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 7: 453-464.
47. Thomas, O. 1911. Abstract on the mammals from southern Shansi, central China. Proc. Zool. Soc. Lond. 19: 693-695.
48. Thomas, W.K., Paabo, S., Villablanca, F.X., and Wilson, A.C. 1990. Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. J. Mol. Evol. 31: 101-112.
49. Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity and progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
50. Walsh, P.S., Metzger, D.A., and Higuchi, R. 1991. Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques, 10: 506-513.
51. Wang, X.T. 1991. Vertebrate fauna of Gansu. Gansu Science and Technology Press, Lanzhou. pp. 1214-1216.
52. Wang, Z.Y., Wang, S., Lu, C.K., and Zhang, R.Z. 1963. The taxonomy, distribution and utilization of bovidae in China. Chinese Biol. Bull. 5: 24-30.
53. Wayne, R.K. 1996. Conservation genetics in the canidae. In Conservation genetics: case histories from nature. Edited by J.C. Avise and J.H. Hamrick. Chapman and Hall, New York. pp. 75-118.
54. Wooding, S., and Ward, R. 1997. Phylogeography and Pleistocene evolution in the North American black bear. Mol. Biol. Evol. 14: 1096-1105.
55. Wu, J.Y. 1985. Systematics and distribution of Chinese takin. In Contemporary mammalogy in China and Japan. Edited by T. Kawamachi. Mammalogy Society of Japan, Tokyo. pp. 95-100.
56. Wu, J.Y. 1986. Study on taxonomy and distribution of Takin in China. Zool. Res. 7: 167-175.
57. Wu, J.Y. 1990. The Chinese takin. China Forestry Publishing House, Beijing.
58. Zen, Z.G. 1997. Studies on home range, movement and activity rhythm of the golden takin (Budorcas taxicolor bedfordi). M.Sc. thesis, Institute of Zoology, The Chinese Academy of Sciences, Beijing.
59. Zhou, M.Z. 1964. The change of Quaternary animal fauna in China. Chinese J. Zool. 9: 274-278.