Collision-induced dissociation of cytidine and its derivatives

Journal of Mass Spectrometry

Volumn 42, Issue 1, 2007, Pages 49-57

  Jensen, Søren S ^a   Ariza, Xavier ^b   Nielsen, Poul ^a   Vilarrasa, Jaume ^b   Kirpekar, Finn ^a  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b UNIVERSITY OF BARCELONA   (Spain)

Author keywords

Cytidine derivatives; Electrospray ionization; Ion trap mass spectrometry; Modified nucleosides; Nucleosides

Indexed keywords

CYTIDINE DERIVATIVES; ELECTROSPRAY IONIZATION; ION TRAP MASS SPECTROMETRY; MODIFIED NUCLEOSIDES; NUCLEOSIDES;

AMMONIA; DISSOCIATION; ISOTOPES; MASS SPECTROMETRY; REACTION KINETICS;

NUCLEIC ACIDS;

2 THIOCYTIDINE; 3 METHYLCYTIDINE; 5 METHYLCYTIDINE; AMMONIA; CYTIDINE; CYTIDINE DERIVATIVE; N 4 ACETYLCYTIDINE; N 4 METHYL 2' DEOXYCYTIDINE; NUCLEIC ACID BASE; RIBOSE; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL ANALYSIS; COLLISIONALLY ACTIVATED DISSOCIATION; ELIMINATION REACTION; ISOTOPE LABELING; PRIORITY JOURNAL; TANDEM MASS SPECTROMETRY;

CYTIDINE; NITROGEN ISOTOPES; PHOSPHORYLATION; RIBOSE; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 33846638637     PISSN: 10765174     EISSN: 10969888     Source Type: Journal    
DOI: 10.1002/jms.1136     Document Type: Article

References (15)

1. Nelson CC, McCloskey JA. Collision-induced dissociation of adenine. J. Am. Chem. Soc. 1992; 114: 3661.
2. Gregson JM, McCloskey JA. Collision-induced dissociation of protonated guanine. Int. J. Mass Spectrom. Ion Process. 1997; 165/166: 475.
3. Nelson CC, McCloskey JA. Collision-induced dissociation of uracil and its derivatives. J. Am. Soc. Mass Spectrom. 1994; 5: 339.
4. Limbach PA, Crain PF, McCloskey JA. Summary: the modified nucleosides of RNA. Nucleic Acids Res. 1994; 22: 2183, http://medlib.med.utah. edu/RNAmods/.
5. Yarian C, Townsend H, Czestkowski W, Sochaka E, Malkiewicz AJ, Guenther R, Miskiewicz A, Agris PF. Accurate translation of the genetic code depends on tRNA modified nucleosides. J. Biol. Chem. 2002; 277: 16391.
6. Phelps SS, Malkiewicz A, Agris PF, Joseph S. Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation. J. Mol. Biol. 2004; 338: 439.
7. Decatur WA, Fournier MJ. rRNA modifications and ribosome function. Trends Biochem. Sci. 2002; 27: 344.
8. King TH, Liu B, McCully RR, Fournier MJ. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell 2003; 11: 425.
9. Dudley E, Lemiere F, Van Dongen W, Langridge JI, El-Sharkwai S, Games DE, Esmans EL, Newton RP. Analysis of urinary nucleosides. III. Identification of 5′-deoxycytidine in urine of a patient with head and neck cancer. Rapid Commun. Mass Spectrom. 2003; 17: 1132.
10. Nakano K, Nakao T, Schram KH, Hammargren WH, McClure TD, Katz M, Petersen E. Urinary excretion of modified nucleosides as biological marker of RNA turnover in patients with cancer and AIDS. Clin. Chim. Acta 1993; 218: 169.
11. Weimann A, Belling D, Poulsen HE. Quantification of 8-oxo-guanine and guanine as the nucleobase, nucleoside and deoxynucleoside forms in human urine by high-performance liquid chromatography-electrospray tandem mass spectrometry. Nucleic Acids Res. 2002; 30: e7.
12. 15N]cytidine. J. Org. Chem. 2000; 65: 2827.
13. Larsen MR, Graham ME, Robinson PJ, Roepstorff P. Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry-evidence for in vivo doubly phosphorylated dynamin I and dynamin III. Mol. Cell. Proteomics 2004; 3: 456.
14. El Ashry ESH, El Kilany Y, Rashed N, Assafir H. Dimroth rearrangement: translocation of heteroatoms in heterocyclic rings and its role in ring transformations of heterocycles. Adv. Heterocycl. Chem. 1999; 75: 79.
15. Chiarelli MP, Jackson OL. Differentiation of isomeric C8-and N2-deoxyguanosine adducts of 2-acetylaminofluorene by fast-atom bombardment and mass spectrometry. J. Am. Soc. Mass Spectrom. 1994; 5: 58.