Dimeric Core Structure of Modular Stator Subunit E of Archaeal H+-ATPase

Journal of Molecular Biology

Volumn 366, Issue 3, 2007, Pages 933-944

  Lokanath, Neratur K ^a   Matsuura, Yoshinori ^a   Kuroishi, Chizu ^a   Takahashi, Naoko ^a   Kunishima, Naoki ^a  

^a Japan   (Japan)

Author keywords

A ATPase; crystal structure; stator; subunit E; V ATPase

Indexed keywords

PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE;

ARCHAEBACTERIUM; ARTICLE; CIRCULAR DICHROISM; CRYSTAL STRUCTURE; ELECTROPHORESIS; ENZYME STRUCTURE; LIGHT SCATTERING; MASS SPECTROMETRY; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN QUATERNARY STRUCTURE; PYROCOCCUS HORIKOSHII; SEQUENCE ANALYSIS; STOICHIOMETRY;

ARCHAEA; PYROCOCCUS HORIKOSHII;

EID: 33846625950     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.11.088     Document Type: Article

References (44)

1. 1-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis. Cell 106 (2001) 331-341
2. Yoshida M., Muneyuki E., and Hisabori T. ATP synthase - a marvellous rotary engine of the cell. Nature Rev. Mol. Cell Biol. 2 (2001) 669-677
3. +-ATPases - nature's most versatile proton pumps. Nature Rev. Mol. Cell Biol. 3 (2002) 94-103
4. +-ATPase/synthase from a thermophilic eubacterium, Thermus thermophilus. Subunit structure and operon. J. Biol. Chem. 275 (2000) 13955-13961
5. 1-ATPase. Proc. Natl Acad. Sci. USA 100 (2003) 2312-2315
6. Yokoyama K., Nakano M., Imamura H., Yoshida M., and Tamakoshi M. Rotation of the proteolipid ring in the V-ATPase. J. Biol. Chem. 278 (2003) 24255-24258
7. Boekema E.J., Ubbink-Kok T., Lolkema J.S., Brisson A., and Konings W.N. Visualization of a peripheral stalk in V-type ATPase: evidence for the stator structure essential to rotational catalysis. Proc. Natl Acad. Sci. USA 94 (1997) 14291-14293
8. Wilkens S., Vasilyeva E., and Forgac M. Structure of the vacuolar ATPase by electron microscopy. J. Biol. Chem. 274 (1999) 31804-31810
9. Arai H., Terres G., Pink S., and Forgac M. Topography and subunit stoichiometry of the coated vesicle proton pump. J. Biol. Chem. 263 (1988) 8796-8802
10. +-ATPase. J. Biol. Chem. 277 (2002) 3357-3363
11. Arata Y., Baleja J.D., and Forgac M. Localization of subunits D, E, and G in the yeast V-ATPase complex using cysteine-mediated cross-linking to subunit B. Biochemistry 41 (2002) 11301-11307
12. Maegawa Y., Morita H., Iyaguchi D., Yao M., Watanabe N., and Tanaka I. Structure of the catalytic nucleotide-binding subunit A of A-type ATP synthase from Pyrococcus horikoshii reveals a novel domain related to the peripheral stalk. Acta Crystallog. sect. D 62 (2006) 483-488
13. Schäfer I.B., Bailer S.M., Düser M.G., Börsch M., Bernal R.A., Stock D., and Grüber G. Crystal structure of the archaeal A1Ao ATP synthase subunit B from Methanosarcina mazei Go1: implications of nucleotide-binding differences in the major A1Ao subunits A and B. J. Mol. Biol. 358 (2006) 725-740
14. Doherty R.D., and Kane P.M. Partial assembly of the yeast vacuolar H(+)-ATPase in mutants lacking one subunit of the enzyme. J. Biol. Chem. 268 (1993) 16845-16851
15. 1-ATPase: affinity purification and structural features by electron microscopy. J. Biol. Chem. 278 (2003) 47299-47306
16. Kane P.M., and Smardon A.M. Assembly and regulation of the yeast vacuolar H+-ATPase. J. Bioenerg. Biomembr. 35 (2003) 313-321
17. +-ATPase (V-ATPase) interacts with the H subunit and is required for V-ATPase function. J. Biol. Chem. 277 (2002) 38409-38415
18. +-ATPase. J. Biol. Chem. 279 (2004) 8732-8739
19. Matthews B.W. Solvent content of protein crystals. J. Mol. Biol. 33 (1968) 491-497
20. Laskowski R.A., Macarthur M.W., Moss D.S., and Thornton J.M. PROCHECK: a program to check the sterochemical quality of protein structures. J. Appl. Crystallog. 26 (1993) 283-291
21. Holm L., and Sander C. Touring protein fold space with Dali/FSSP. Nucl. Acids Res. 26 (1998) 316-319
22. Bujacz G., Jaskolski M., Alexandratos J., Wlodawer A., Merkel G., Katz R.A., and Skalka A.M. The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations. Structure 4 (1996) 89-96
23. Janin J. Specific versus non-specific contacts in protein crystals. Nature Struct. Biol. 4 (1997) 973-974
24. Jones S., and Thornton J.M. Principles of protein-protein interactions. Proc. Natl Acad. Sci. USA 93 (1996) 13-20
25. Owegi M.A., Carenbauer A.L., Wick N.M., Brown J.F., Terhune K.L., Bilbo S.A., et al. Mutational analysis of the stator subunit E of the yeast V-ATPase. J. Biol. Chem. 280 (2005) 18393-18402
26. Dunn S.D., McLachlin D.T., and Revington M. The second stalk of Escherichia coli ATP synthase. Biochim. Biophys. Acta 1458 (2000) 356-363
27. 0-ATP synthase. J. Biol. Chem. 278 (2003) 34751-34756
28. Rubinstein J.L., Walker J.E., and Henderson R. Structure of the mitochondrial ATP synthase by electron cryomicroscopy. EMBO J. 22 (2003) 6182-6192
29. Del Rizzo P.A., Bi Y., Dunn S.D., and Shilton B.H. The "second stalk" of Escherichia coli ATP synthase: structure of the isolated dimerization domain. Biochemistry 41 (2002) 6875-6884
30. Armbrüster A., Svergun D.I., Coskun U., Juliano S., Bailer S.M., and Grüber G. Structural analysis of the stalk subunit Vma5p of the yeast V-ATPase in solution. FEBS Letters 570 (2004) 119-125
31. Féthière J., Venzke D., Diepholz M., Seybert A., Geerlof A., Gentzel M., et al. Building the stator of the yeast vacuolar-ATPase: specific interaction between subunits E and G. J. Biol. Chem. 279 (2004) 40670-40676
32. Shao E., and Forgac M. Involvement of the nonhomologous region of subunit A of the yeast V-ATPase in coupling and in vivo dissociation. J. Biol. Chem. 279 (2004) 48663-48670
33. Coskun U., Chaban Y.L., Lingl A., Müller V., Keegstra W., Boekema E.J., and Grüber G. Structure and subunit arrangement of the A-type ATP synthase complex from the archaeon Methanococcus jannaschii visualized by electron microscopy. J. Biol. Chem. 279 (2004) 38644-38648
34. Lokanath N.K., Ukita Y., Sugahara M., and Kunishima N. Purification, crystallization and preliminary crystallographic analysis of the vacuole-type ATPase subunit E from Pyrococcus horikoshii OT3. Acta Crystallog. sect. F 61 (2005) 56-58
35. Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
36. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72 (1976) 248-254
37. Terwilliger T.C., and Berendzen J. Automated MAD and MIR structure solution. Acta Crystallog. sect. D 55 (1999) 849-861
38. Terwilliger T.C. Maximum-likelihood density modification with pattern recognition of structural motifs. Acta Crystallog. sect. D 57 (2001) 1755-1762
39. Collaborative Computational Project No. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallog. sect. D 50 (1994) 760-763
40. Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallographic & NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D 54 (1998) 905-921
41. Sreerama N., Venyaminov S.Y., and Woody R.W. Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy. Protein Sci. 8 (1999) 370-380
42. Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24 (1991) 946-950
43. Esnouf R.M. Further additions to Molscript version 1.4, including reading and contouring of electron-density maps. Acta Crystallog. sect. D 55 (1999) 938-940
44. Merritt E.A., and Bacon D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 277 (1997) 505-524