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Volumn 1, Issue 1, 2006, Pages

Tools for knowledge acquisition within the NeuroScholar system and their application to anatomical tract-tracing data

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EID: 33846593763     PISSN: None     EISSN: 17475333     Source Type: Journal    
DOI: 10.1186/1747-5333-1-10     Document Type: Article
Times cited : (17)

References (58)
  • 1
    • 34248362956 scopus 로고    scopus 로고
    • Website
    • The NeuroScholar Project Website http://www.neuroscholar.org/
  • 2
    • 0003614970 scopus 로고
    • New solutions for science communication problems needed now
    • 10.1016/0166-2236(78)90002-4
    • Bloom FE New solutions for science communication problems needed now Trends in Neurosciences 1978 1 1 10.1016/0166-2236(78)90002-4
    • (1978) Trends in Neurosciences , vol.1 , pp. 1
    • Bloom, F.E.1
  • 3
    • 0028821532 scopus 로고
    • Neuroscience-knowledge management: Slow change so far
    • 10.1016/0166-2236(95)93864-T 7537402
    • Bloom FE Neuroscience-knowledge management: Slow change so far Trends Neurosci 1995 18 48-49 10.1016/0166-2236(95)93864-T 7537402
    • (1995) Trends Neurosci , vol.18 , pp. 48-49
    • Bloom, F.E.1
  • 4
    • 0035968429 scopus 로고    scopus 로고
    • Knowledge management of the neuroscientific literature: The data model and underlying strategy of the NeuroScholar system
    • 10.1098/rstb.2001.0909 11545698
    • Burns GA Knowledge management of the neuroscientific literature: The data model and underlying strategy of the NeuroScholar system Philos Trans R Soc Lond B Biol Sci 2001 356 1187-1208 10.1098/rstb.2001.0909 11545698
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 1187-1208
    • Burns, G.A.1
  • 5
    • 0035968438 scopus 로고    scopus 로고
    • Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac)
    • 10.1098/rstb.2001.0908 11545697
    • Stephan KE Kamper L Bozkurt A Burns GA Young MP Kotter R Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac) Philos Trans R Soc Lond B Biol Sci 2001 356 1159-1186 10.1098/rstb.2001.0908 11545697
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 1159-1186
    • Stephan, K.E.1    Kamper, L.2    Bozkurt, A.3    Burns, G.A.4    Young, M.P.5    Kotter, R.6
  • 6
    • 24944447969 scopus 로고    scopus 로고
    • The Brain Architecture Management System
    • 10.1385/NI:3:1:015 15897615
    • Bota M Dong H Swanson LW The Brain Architecture Management System. Neuroinformatics 2005 3 15-48 10.1385/NI:3:1:015 15897615
    • (2005) Neuroinformatics , vol.3 , pp. 15-48
    • Bota, M.1    Dong, H.2    Swanson, L.W.3
  • 7
    • 0025332063 scopus 로고
    • Connection, a microcomputer program for storing and analyzing structural properties of neural circuits
    • 10.1016/0010-4809(90)90007-Y 2306935
    • Nicolelis M Tinone G Sameshima K Timo-Iaria C Yu C Bilt MV Connection, a microcomputer program for storing and analyzing structural properties of neural circuits. Comput Biomed Res 1990 23 64-81 10.1016/ 0010-4809(90)90007-Y 2306935
    • (1990) Comput Biomed Res , vol.23 , pp. 64-81
    • Nicolelis, M.1    Tinone, G.2    Sameshima, K.3    Timo-Iaria, C.4    Yu, C.5    Bilt, M.V.6
  • 8
    • 0025718412 scopus 로고
    • Distributed hierarchical processing in the primate cerebral cortex
    • 1822724
    • Felleman DJ Van Essen DC Distributed hierarchical processing in the primate cerebral cortex Cereb Cortex 1991 1 1-47 1822724
    • (1991) Cereb Cortex , vol.1 , pp. 1-47
    • Felleman, D.J.1    Van Essen, D.C.2
  • 9
    • 0027273888 scopus 로고
    • The organization of neural systems in the primate cerebral cortex
    • Young MP The organization of neural systems in the primate cerebral cortex Proc R Soc Lond B Biol Sci 1993 252 13-18
    • (1993) Proc R Soc Lond B Biol Sci , vol.252 , pp. 13-18
    • Young, M.P.1
  • 10
    • 0028909231 scopus 로고
    • Analysis of connectivity in the cat cerebral cortex
    • 7869111
    • Scannell JW Blakemore C Young MP Analysis of connectivity in the cat cerebral cortex J Neurosci 1995 15 1463-1483 7869111
    • (1995) J Neurosci , vol.15 , pp. 1463-1483
    • Scannell, J.W.1    Blakemore, C.2    Young, M.P.3
  • 11
    • 33846588760 scopus 로고    scopus 로고
    • Neural connectivity in the rat: Theory, methods and applications
    • Oxford, Oxford University
    • Burns GAPC Neural connectivity in the rat: Theory, methods and applications Department of Physiological Sciences Oxford, Oxford University 1997 1-481
    • (1997) Department of Physiological Sciences , pp. 1-481
    • Burns, G.A.P.C.1
  • 12
    • 0032931567 scopus 로고    scopus 로고
    • The connectional organization of the cortico-thalamic system of the cat
    • 10.1093/cercor/9.3.277 10355908
    • Scannell JW Burns GA Hilgetag CC O'Neil MA Young MP The connectional organization of the cortico-thalamic system of the cat Cereb Cortex 1999 9 277-299 10.1093/cercor/9.3.277 10355908
    • (1999) Cereb Cortex , vol.9 , pp. 277-299
    • Scannell, J.W.1    Burns, G.A.2    Hilgetag, C.C.3    O'Neil, M.A.4    Young, M.P.5
  • 13
    • 0034728117 scopus 로고    scopus 로고
    • Analysis of the connectional organization of neural systems associated with the hippocampus in rats
    • 10.1098/rstb.2000.0549
    • Burns GA Young MP Analysis of the connectional organization of neural systems associated with the hippocampus in rats Philos Trans R Soc Lond B Biol Sci 2001 355 55-70 10.1098/rstb.2000.0549
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.355 , pp. 55-70
    • Burns, G.A.1    Young, M.P.2
  • 14
    • 0038343596 scopus 로고    scopus 로고
    • Tools and approaches for the construction of knowledge models from the neuroscientific literature
    • 10.1385/NI:1:1:081 15055395
    • Burns GA Khan AM Ghandeharizadeh S O'Neill MA Chen YS Tools and approaches for the construction of knowledge models from the neuroscientific literature Neuroinformatics 2003 1 81-109 10.1385/ NI:1:1:081 15055395
    • (2003) Neuroinformatics , vol.1 , pp. 81-109
    • Burns, G.A.1    Khan, A.M.2    Ghandeharizadeh, S.3    O'Neill, M.A.4    Chen, Y.S.5
  • 15
    • 0026684846 scopus 로고
    • Objective analysis of the topological organization of the primate cortical visual system
    • 10.1038/358152a0 1614547
    • Young MP Objective analysis of the topological organization of the primate cortical visual system Nature 1992 358 152-155 10.1038/358152a0 1614547
    • (1992) Nature , vol.358 , pp. 152-155
    • Young, M.P.1
  • 16
    • 0028569042 scopus 로고
    • Analysis of connectivity: Neural systems in the cerebral cortex
    • 7889215
    • Young MP Scannell JW Burns GA Blakemore C Analysis of connectivity: neural systems in the cerebral cortex Rev Neurosci 1994 5 227-250 7889215
    • (1994) Rev Neurosci , vol.5 , pp. 227-250
    • Young, M.P.1    Scannell, J.W.2    Burns, G.A.3    Blakemore, C.4
  • 17
    • 0004187059 scopus 로고
    • The analysis of cortical connectivity
    • Austin, Texas, R. G. Landes
    • Young MP Scannell JW Burns GAPC The analysis of cortical connectivity Austin, Texas, R. G. Landes 1995
    • (1995)
    • Young, M.P.1    Scannell, J.W.2    Burns, G.A.P.C.3
  • 18
    • 0029654473 scopus 로고
    • Non-metric multidimensional scaling in the analysis of neuroanatomical connection data and the organization of the primate cortical visual system
    • 8577827
    • Young MP Scannell JW O'Neill MA Hilgetag CC Burns G Blakemore C Non-metric multidimensional scaling in the analysis of neuroanatomical connection data and the organization of the primate cortical visual system Philos Trans R Soc Lond B Biol Sci 1995 348 281-308 8577827
    • (1995) Philos Trans R Soc Lond B Biol Sci , vol.348 , pp. 281-308
    • Young, M.P.1    Scannell, J.W.2    O'Neill, M.A.3    Hilgetag, C.C.4    Burns, G.5    Blakemore, C.6
  • 19
    • 0034728146 scopus 로고    scopus 로고
    • Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat
    • 10.1098/rstb.2000.0551 10703046
    • Hilgetag CC Burns GA O'Neill MA Scannell JW Young MP Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat Philos Trans R Soc Lond B Biol Sci 2000 355 91-110 10.1098/rstb.2000.0551 10703046
    • (2000) Philos Trans R Soc Lond B Biol Sci , vol.355 , pp. 91-110
    • Hilgetag, C.C.1    Burns, G.A.2    O'Neill, M.A.3    Scannell, J.W.4    Young, M.P.5
  • 20
    • 13844284450 scopus 로고    scopus 로고
    • Motifs in brain networks
    • 524253 15510229 10.1371/journal.pbio.0020369
    • Sporns O Kotter R Motifs in brain networks PLoS Biol 2004 2 e369 524253 15510229 10.1371/journal.pbio.0020369
    • (2004) PLoS Biol , vol.2
    • Sporns, O.1    Kotter, R.2
  • 21
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: A structural description of the human brain
    • 1239902 16201007 10.1371/journal.pcbi.0010042
    • Sporns O Tononi G Kotter R The human connectome: A structural description of the human brain PLoS Comput Biol 2005 1 e42 1239902 16201007 10.1371/journal.pcbi.0010042
    • (2005) PLoS Comput Biol , vol.1
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 24
    • 34248338082 scopus 로고    scopus 로고
    • CoCoMac (Collations of Connectivity data on the Macaque brain) http://www.cocomac.org/
  • 25
    • 34248343208 scopus 로고    scopus 로고
    • UniProt: The Universal Protein Resource http://www.uniprot.org/
  • 26
    • 33746411084 scopus 로고    scopus 로고
    • NeuroScholar's Electronic Laboratory Notebook and its Application to Neuroendocrinology
    • 10.1385/NI:4:2:139 16845166
    • Khan AM Hahn JD Cheng WC Watts AG Burns GAPC NeuroScholar's Electronic Laboratory Notebook and its Application to Neuroendocrinology Neuroinformatics 2006 4 139-160 10.1385/NI:4:2:139 16845166
    • (2006) Neuroinformatics , vol.4 , pp. 139-160
    • Khan, A.M.1    Hahn, J.D.2    Cheng, W.C.3    Watts, A.G.4    Burns, G.A.P.C.5
  • 27
    • 34248401335 scopus 로고    scopus 로고
    • Extracting and managing model parameters from the literature
    • San Antonio, TX
    • Burns G Extracting and managing model parameters from the literature.: San Antonio, TX. 2005
    • (2005)
    • Burns, G.1
  • 28
    • 34248365823 scopus 로고    scopus 로고
    • A 'Stress Management' System: Computational knowledge representation of experiments that delineate neural circuits and histochemical expression patterns based on the primary literature and raw data: San Diego
    • Burns GAPC Khan AM Cheng WC Watts AG A 'Stress Management' System: Computational knowledge representation of experiments that delineate neural circuits and histochemical expression patterns based on the primary literature and raw data: San Diego. 2005
    • (2005)
    • Burns, G.A.P.C.1    Khan, A.M.2    Cheng, W.C.3    Watts, A.G.4
  • 29
    • 77951466342 scopus 로고    scopus 로고
    • Interactive Knowledge Acquisition: A Tutoring Perspective: George Mason University, Fairfax, Virginia
    • Gil Y Kim J Interactive Knowledge Acquisition: A Tutoring Perspective: George Mason University, Fairfax, Virginia. 2002 357-362
    • (2002) , pp. 357-362
    • Gil, Y.1    Kim, J.2
  • 30
    • 0036064249 scopus 로고    scopus 로고
    • Software engineering tools and approaches for neuroinformatics: The design and implementation of the View-Primitive Data Model framework (VPDMf)
    • 10.1016/S0925-2312(02)00414-9
    • Burns GAPC Bian F Cheng WC Kapadia S Shahabi C Ghandeharizadeh S Software engineering tools and approaches for neuroinformatics: The design and implementation of the View-Primitive Data Model framework (VPDMf) Neurocomputing 2002 44-46 1049-1056 10.1016/S0925-2312(02)00414-9
    • (2002) Neurocomputing , vol.44-46 , pp. 1049-1056
    • Burns, G.A.P.C.1    Bian, F.2    Cheng, W.C.3    Kapadia, S.4    Shahabi, C.5    Ghandeharizadeh, S.6
  • 32
    • 34248330577 scopus 로고    scopus 로고
    • TouchGraph LLC http://www.touchgraph.com/
  • 34
    • 33748447418 scopus 로고    scopus 로고
    • Modelling Naturalistic Argumentation in Research Literatures: Representation and Interaction Design Issues
    • Knowledge Media Institute
    • Buckingham Shum SJ Uren V Li G Sereno B Mancini C Modelling Naturalistic Argumentation in Research Literatures: Representation and Interaction Design Issues. Tech Report kmi-04-28, Knowledge Media Institute 2004
    • (2004) Tech Report Kmi-04-28
    • Buckingham Shum, S.J.1    Uren, V.2    Li, G.3    Sereno, B.4    Mancini, C.5
  • 35
    • 0001146471 scopus 로고    scopus 로고
    • Knowledge Mechanics and the NeuroScholar Project: A New Approach to Neuroscientific Theory
    • San Diego, Academic Press Arbib MA and Grethe J
    • Burns GAPC Knowledge Mechanics and the NeuroScholar Project: A New Approach to Neuroscientific Theory Computing the Brain, A guide to Neuroinformatics San Diego, Academic Press Arbib MA and Grethe J 2001 319-335
    • (2001) Computing the Brain, A Guide to Neuroinformatics , pp. 319-335
    • Burns, G.A.P.C.1
  • 36
    • 33846636928 scopus 로고    scopus 로고
    • The NeuARt II system: A viewing tool for neuroanatomical data based on published neuroanatomical atlases
    • Burns G Cheng WC Thompson RF Swanson L The NeuARt II system: A viewing tool for neuroanatomical data based on published neuroanatomical atlases. BMC Bioinformatics 2006
    • (2006) BMC Bioinformatics
    • Burns, G.1    Cheng, W.C.2    Thompson, R.F.3    Swanson, L.4
  • 37
    • 0003479813 scopus 로고
    • Brain Maps: Structure of the Rat Brain
    • San Diego, Elsevier Academic Press 1
    • Swanson LW Brain Maps: Structure of the Rat Brain San Diego, Elsevier Academic Press 1 1992
    • (1992)
    • Swanson, L.W.1
  • 38
    • 34248368261 scopus 로고    scopus 로고
    • The NeuroScholar SourceForge Project Page http://www.sourceforge.net/ projects/neuroscholar
  • 40
    • 34248352368 scopus 로고    scopus 로고
    • Multivalent Homepage
    • Multivalent Homepage http://multivalent.sourceforge.net/
  • 41
    • 33746433086 scopus 로고    scopus 로고
    • The Multivalent Browser: A Platform for New Ideas: Atlanta, Georgia
    • Phelps TA Wilensky R The Multivalent Browser: A Platform for New Ideas: Atlanta, Georgia. 2001
    • (2001)
    • Phelps, T.A.1    Wilensky, R.2
  • 42
    • 13244254689 scopus 로고    scopus 로고
    • Practical RDF
    • Sebastopol, CA, O'Reilly & Associates, Inc
    • Powers S Practical RDF Sebastopol, CA, O'Reilly & Associates, Inc. 2003
    • (2003)
    • Powers, S.1
  • 43
    • 0026640307 scopus 로고
    • Connections of the posterior nucleus of the amygdala
    • 10.1002/cne.903240203 1430327
    • Canteras NS Simerly RB Swanson LW Connections of the posterior nucleus of the amygdala J Comp Neurol 1992 324 143-179 10.1002/cne.903240203 1430327
    • (1992) J Comp Neurol , vol.324 , pp. 143-179
    • Canteras, N.S.1    Simerly, R.B.2    Swanson, L.W.3
  • 44
    • 33344468683 scopus 로고    scopus 로고
    • Text Mining for Biology and Biomedicine
    • London, Artech House
    • Ananiadou S McNaught J Text Mining for Biology and Biomedicine London, Artech House 2006
    • (2006)
    • Ananiadou, S.1    McNaught, J.2
  • 45
    • 34248329335 scopus 로고    scopus 로고
    • MGED - Microarray Gene Expression Data Society Home Page
    • MGED - Microarray Gene Expression Data Society Home Page http://www.mged.org/
  • 46
    • 0034677518 scopus 로고    scopus 로고
    • One-stop shop for microarray data
    • 10.1038/35001676 10693778
    • Brazma A Robinson A Cameron G Ashburner M One-stop shop for microarray data. Nature 2000 403 699-700 10.1038/35001676 10693778
    • (2000) Nature , vol.403 , pp. 699-700
    • Brazma, A.1    Robinson, A.2    Cameron, G.3    Ashburner, M.4
  • 48
    • 34248366694 scopus 로고    scopus 로고
    • Corpora and their annotation
    • Boston, Artech House Ananiadou S and McNaught J
    • Kim JD Tsujii J Corpora and their annotation Text Mining for Biology and Biomedicine Boston, Artech House Ananiadou S and McNaught J 2006 179-212
    • (2006) Text Mining for Biology and Biomedicine , pp. 179-212
    • Kim, J.D.1    Tsujii, J.2
  • 49
    • 34548135336 scopus 로고    scopus 로고
    • The Protégé Ontology Editor and Knowledge Acquisition System
    • The Protégé Ontology Editor and Knowledge Acquisition System http://protege.stanford.edu/
  • 50
    • 0026808394 scopus 로고
    • Dimensions of Knowledge Sharing and Reuse
    • 10.1016/0010-4809(92)90003-S
    • Musen MA Dimensions of Knowledge Sharing and Reuse. Computers and Biomedical Research 1992 25 435-467 10.1016/0010-4809(92)90003-S
    • (1992) Computers and Biomedical Research , vol.25 , pp. 435-467
    • Musen, M.A.1
  • 52
    • 34248365407 scopus 로고    scopus 로고
    • The NeuroCommons Science Commons http://sciencecommons.org/data/ neurocommons
  • 53
    • 4243743147 scopus 로고    scopus 로고
    • Knowledge-Based Integration of Neuroscience Data Sources
    • Gupta A Ludascher B Martone ME Knowledge-Based Integration of Neuroscience Data Sources 2000
    • (2000)
    • Gupta, A.1    Ludascher, B.2    Martone, M.E.3
  • 55
    • 0242468090 scopus 로고    scopus 로고
    • Towards a formalization of disease-specific ontologies for neuroinformatics
    • 10.1016/j.neunet.2003.07.008 14622884
    • Gupta A Ludascher B Grethe JS Martone ME Towards a formalization of disease-specific ontologies for neuroinformatics Neural Netw 2003 16 1277-1292 10.1016/j.neunet.2003.07.008 14622884
    • (2003) Neural Netw , vol.16 , pp. 1277-1292
    • Gupta, A.1    Ludascher, B.2    Grethe, J.S.3    Martone, M.E.4
  • 56
    • 21244495087 scopus 로고
    • EXPECT: Explicit Representations for Flexible Acquistion: Banff, Canada
    • Swartout B Gil Y EXPECT: Explicit Representations for Flexible Acquistion: Banff, Canada. 1995
    • (1995)
    • Swartout, B.1    Gil, Y.2
  • 57
    • 34248341118 scopus 로고    scopus 로고
    • An Integrated Environment for Knowledge Acquisition: Sante Fe, NM
    • Blythe J Jihie K Ramachandran S Gil Y An Integrated Environment for Knowledge Acquisition: Sante Fe, NM. 2001
    • (2001)
    • Blythe, J.1    Jihie, K.2    Ramachandran, S.3    Gil, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.