Correspondence analysis approach for finding allele associations in population genetic study

Computational Statistics and Data Analysis

Volumn 51, Issue 6, 2007, Pages 3145-3155

  Park, Mira ^a   Lee, Jae Won ^b   Kim, Choongrak ^c  

^a Eulji University   (South Korea)

^b Korea University   (South Korea)

^c Pusan National University   (South Korea)

Author keywords

Biplot; Correspondence analysis; Hardy Weinberg equilibrium; Linkage disequilibrium; Supplementary data analysis

Indexed keywords

DATA REDUCTION; GENES; GRAPH THEORY; INFORMATION RETRIEVAL; NUMERICAL METHODS;

BIPLOT; CORRESPONDENCE ANALYSIS; HARDY WEINBERG EQUILIBRIUM; LINKAGE DISEQUILIBRIUM; SUPPLEMENTARY DATA ANALYSIS;

POPULATION STATISTICS;

EID: 33846567169     PISSN: 01679473     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.csda.2006.09.002     Document Type: Article

References (20)

1. Abecasis G.R., and Cookson W.O.C. GOLD-Graphical overview of linkage disequilibrium. Bioinformatics 16 2 (2000) 182-183
2. Albeza A.V., Picornell A., Acreche N., Tomas C., Castro J.A., and Ramon M.M. Genetic variability at 14 STR loci in the Puna population of north western Argentina. Internat. J. Leg. Med. 116 (2002) 126-132
3. Budowle B., Nhari L.Y., Moretti T.R., Kanoyangwa S.B., Masuka E., Defenbaugyh D.A., and Smerick J.B. Zimbabwe black population data on six short tandem repeat loci-CSF1PO, TPOX, THO1, D3S1358, VWA and FGA. Forensic Sci. Internat. 90 (1997) 215-221
4. Fregeau C.J., Tan-Siew W.F., Yap K.H., Carmody G.R., Chowm S.T., and Fourney R.M. Population genetic characteristics of the STR loci D21S11 and FGA in eight diverse human populations. Human Biol. 70 5 (1998) 813-844
5. Gabriel K.R. The biplot graphics display of matrices with applications to principal component analysis. Biometrika 58 (1971) 453-467
6. Gabriel K.R. Least square approximation of matrices by additive and multiplicative models. J. Roy. Statist. Soc. Ser. B 40 (1978) 186-196
7. Gehrig C., Hochmeister M., Borer U.V., Dirnhofer R., and Budowle B. Swiss Caucasian population data for 13 STR loci using AmpFISTR profiler pplus and cofiler PCR amplification kits. J. Forensic Sci. Med. 44 5 (1999) 1035-1038
8. Gower J.C., and Hand D.J. Biplots (1996), Chapman & Hall, London
9. Greenacre M. Correspondence analysis of multivariate categorical data by weighted least squares. Biometrika 75 3 (1988) 457-467
10. Greenacre M. Correspondence Analysis in Practice (1993), Academic Press, New York
11. Greenacre M., and Hastie T. Geometric interpretation of correspondence analysis. J. Amer. Statist. Assoc. 82 (1987) 437-447
12. Guo S.W., and Thomson E.A. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48 (1992) 361-372
13. Iwasa M., Wiegand P., Rand S., Schrenkamp M., Atasoy S., and Brinkmann B. Genetic variation at five STR loci in subpopulations living in Turkey. Internat. J. Legal Med. 110 (1997) 170-172
14. Langley C.H., Tobari Y.N., and Kojima K.I. Linkage disequilibrium in natural populations of Drosophila melanogaster. Genetics 78 (1974) 921-936
15. Louis E.J., and Dempster E.R. An exact test for Hardy-Weinberg and multiple alleles. Biometrics 43 (1987) 805-811
16. Shin C.H., Jang P., Hong K.M., and Paik M.K. Allele frequencies of 10 STR loci in Koreans. Forensic Sci. Internat. 140 (2004) 133-135
17. Sjerps M., van der Geest N., Pierson C., Gajadhar M., and Kloosterman A. A Dutch population study of the STR loci HUMTHO1, HUMFES/FPS, HUMVWA21/1 and HUMF13A1, conducted for forensic purposes. Internat. J. Legal Med. 108 (1995) 127-134
18. Waiyawuth W., Zhang L., Rittner C., and Peter and Schneider M. Genetic analysis of the short tandem repeat system D12S391 in the German and three Asian populations. Forensic Sci. Internat. 94 (1998) 25-31
19. Weir B.S. Genetic Data Anlaysis II (1996), Sinauer Associates Inc., Massachusetts
20. Weir, B.S., Brooks, L.D., 1986. Disequilibrium on human chromosome 11p. Genetic Epidemiology (Suppl. 1), 177-183.