Petrotoga halophila sp. nov., a thermophilic, moderately halophilic, fermentative bacterium isolated from an offshore oil well in Congo

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 1, 2007, Pages 40-44

  Miranda Tello, Elizabeth ^a,b   Fardeau, Marie Laure ^a   Joulian, Catherine ^a,c   Magot, Michel ^d   Thomas, Pierre ^a   Tholozan, Jean Luc ^a   Olivier, Bernard ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b EL COLEGIO DE LA FRONTERA SUR   (Mexico)

^c BRGM   (France)

^d UNIVERSITÉ DE PAU ET DES PAYS DE L'ADOUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CHLORAMPHENICOL; CYTOSINE; GUANINE; KANAMYCIN; RIFAMPICIN; SMALL SUBUNIT RIBOSOMAL RNA; SODIUM CHLORIDE; SULFATE; SULFIDE; SULFITE; SULFUR; THIOSULFATE; VANCOMYCIN;

ANIMAL CELL; ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONGO; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENUS; GRAM NEGATIVE BACTERIUM; HALOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OFFSHORE OIL INDUSTRY; PETROTOGA HALOPHILA; PH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; TEMPERATURE; THERMOPHILIC BACTERIUM;

BACTERIAL TYPING TECHNIQUES; CONGO; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GRAM-NEGATIVE ANAEROBIC STRAIGHT, CURVED, AND HELICAL RODS; HEAT; MOLECULAR SEQUENCE DATA; PETROLEUM; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE;

BACTERIA (MICROORGANISMS); HALOPHILA; NEGIBACTERIA; PETROTOGA; PETROTOGA MEXICANA; PETROTOGA MIOTHERMA; PETROTOGA OLEARIA;

EID: 33846547143     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64516-0     Document Type: Article

References (22)

1. Balch, W. E., Fox, G. E., Magrum, R. J. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
2. Benson, D., Boguski, M. S., Lipman, D. J., Ostell, J., Ouellette, B. F., Rapp, B. A. & Wheeler, D. L. (1999). GenBank. Nucleic Acids Res 27, 12-17.
3. Connan, J., Lacrampe-Couloume, G. & Magot, M. (1996). Origin of gases in reservoirs. In Proceedings of the 1995 Gas Research Conference, vol. 1, pp. 21-61. Edited by D. A. Dolenc. Rockville, MD: Government Institutes.
4. Cord-Ruwisch, R. (1985). A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbial Methods 4, 33-36.
5. Davey, M. E., Wood, W. A., Key, R., Nakamura, K. & Stahl, D. A. (1993). Isolation of three species of Geotoga and Petrotoga: two new genera, representing a new lineage in the bacterial line of descent distantly related to the "Thermotogales". Syst Appl Microbiol 16, 191-200.
6. Fardeau, M.-L., Ollivier, B., Patel, B. K. C., Magot, M., Thomas, P., Rimbault, A., Rocchiccioli, F. & Garcia, J.-L. (1997). Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacterial 47, 1013-1019.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
9. Hungate, R. E. (1969). A roll-tube method for the cultivation of strict anaerobes. Methods Microbiol 3B, 117-132.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-232. Edited by H. N. Munro. New York: Academic Press.
11. L'Haridon, S., Miroshnichenko, M. L., Hippe, H., Fardeau, M. L., Bonch-Osmolovskaya, E. A., Stackebrandt, E. & Jeanthon, C. (2002). Petrotoga olearia sp. nov. and Petrotoga sibirica sp. nov., two thermophilic bacteria isolated from a continental petroleum reservoir in Western Siberia. Int J Syst Evol Microbiol 52, 1715-1722.
12. Lien, T., Madsen, M., Rainey, F. A. & Birkeland, N. K. (1998). Petrotoga mobilis sp. nov., from a North Sea oil-production well. Int J Syst Bacteriol 48, 1007-1013.
13. Magot, M., Ollivier, B. & Patel, B. K. C. (2000). Microbiology of petroleum reservoirs. Antonie van Leeuwenhoek 77, 103-116.
14. Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker, C. T., Jr, Saxman, P. R., Farris, R. J., Garrity, G. M., Olsen, G. J., Schmidt T. M. & Tiedje, J. M. (2001). The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29, 173-174.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Miranda-Tello, E., Fardeau, M.-L., Thomas, P., Ramirez, F., Casalot, L., Cayol, J.-L., Garcia, J.-L. & Ollivier, B. (2004). Petrotoga mexicana sp. nov., a novel thermophilic, anaerobic and xylanolytic bacterium isolated from an oil-producing well in the Gulf of Mexico. Int J Syst Evol Microbiol 54, 169-174.
17. Ollivier, B. & Cayol, J.-L. (2005). The fermentative, iron-reducing, and nitrate-reducing microorganisms. In Petroleum Microbiology, pp. 71-88. Edited by B. Ollivier & M. Magot. Washington, DC: American Society for Microbiology.
18. Saito, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Stetter, K. O., Huber, R., Blöchl, E., Kurr, M., Eden, R. D., Fielder, M., Cash, H. & Vance, I. (1993). Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs. Nature 365, 743-745.
20. Thabet, O. B., Fardeau, M.-L., Joulian, C., Thomas, P., Hamdi, M., Garcia, J.-L. & Ollivier, B. (2004). Clostridium tunisiense sp. nov., a new proteolytic, sulfur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse. Anaerobe 10, 185-190.
21. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. L, Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.