Developing indices of abundance using habitat data in a statistical framework

Bulletin of Marine Science

Volumn 79, Issue 3, 2006, Pages 545-559

  Maunder, Mark N ^a   Hinton, Michael G ^a   Bigelow, Keith A ^b   Langley, Adam D ^c  

^a INTER AMERICAN TROPICAL TUNA COMMISSION   (United States)

^b PACIFIC ISLANDS FISHERIES SCIENCE CENTER   (United States)

^c SECRETARIAT OF THE PACIFIC COMMUNITY   (New Caledonia)

Author keywords

[No Author keywords available]

Indexed keywords

CATCH PER UNIT EFFORT; FISHERY MODELING; HABITAT SELECTION; HABITAT STRUCTURE; MULTIVARIATE ANALYSIS; PERCIFORM; RELATIVE ABUNDANCE; TUNA FISHERY; UNCERTAINTY ANALYSIS;

PACIFIC OCEAN; PACIFIC OCEAN (CENTRAL); PACIFIC OCEAN (WEST);

ANIMALIA; SCOMBRIDAE; THUNNUS OBESUS;

EID: 33846528937     PISSN: 00074977     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (28)

1. Batch, P., L. Dagorn, A. Bertrand, E. Josse, and C. Misselis. 2003. Acoustic telemetry versus monitored longline fishing for studying the vertical distribution of pelagic fish: bigeye tuna (Thunnus obesus) in French Polynesia. Fish. Res. 60: 281-292.
2. Bigelow, K. A., J. Hampton, and N. Miyabe. 2002. Application of the habitat-based model to estimate effective longline effort and relative abundance of Pacific bigeye tuna (Thunnus obesus). Fish. Ocean. 11: 143-155.
3. _, M. N. Maunder, and M. G. Hinton. 2003. Comparison of deterministic and statistical habitat-based models to estimate effective longline effort and standardized CPUE for bigeye and yellowfin tuna. Standing Committee on Tuna and Billfish 16 RG-3. 19 p.
4. _, A. Langley, T. Patterson, and N. Miyabe. 2005. Relative abundance indices of the Japanese longline fishery for bigeye tuna: analysis of data from the western and central Pacific Ocean. Pages 110-129 in Migration and habitat preferences of bigeye tuna, Thunnus obesus, on the east coast of Australia - a project using archival and conventional tags to determine key uncertainties in the species stock structure, movement dynamics and CPUE trends. CSIRO Marine Research, FRDC Project no. 1999. Report 109.
5. Boggs, C. H. 1992. Depth, capture time, and hooked longevity of longline-caught pelagic fish: timing bites of fish with chips. Fish. Bull. 90: 642-658.
6. Carton, H., G. Chepurin, and X. Cao. 2000a. A simple ocean data assimilation analysis of the global upper ocean 1950-95. Part I: Methodology. J. Phys. Ocean. 30: 294-309.
7. _, _, and _. 2000b. A simple ocean data assimilation analysis of the global upper ocean 1950-95. Part II: Results. J. Phys. Ocean. 30: 311-326.
8. Francis, R. I. C. C. 1999. The impact of correlations in standardized CPUE indices. NZ Fish. Ass. Res. Doc. 99/42.
9. Goodyear, C. P., D. Die, D. W. Kerstetter, D. B. Olson, E. Prince, and G. P. Scott. 2003. Habitat standardization of CPUE indices: research needs. Pages 613-623 in ICCAT collective volume of scientific papers 55.
10. Hampton, J., P. Kleiber, A. Langley, Y. Takeuchi, and M. Ichinokawa. 2005. Stock assessment of bigeye tuna in the western and central Pacific Ocean. Western and Central Pacific Fisheries Commission Science Committee 1 Stock Assessment Working Paper 2. 77 p.
11. Hinton, M. G. 1996. Standardizing catch and effort statistics using physiological, ecological, or behavioral constraints, and environmental data, with applications to blue marlin (Makaira nigricans) and swordfish (Xiphias gladius) of the Pacific Ocean. Ph.D. Diss., Scripps Institution of Oceanography, University of California, San Diego. 139 p.
12. _. 2001. Status of blue marlin in the Pacific Ocean. Inter. Amer. Trop. Tuna Comm., Stock Assess. Rep. 1: 284-316.
13. _. 2003. Status of swordfish stocks in the eastern Pacific Ocean estimated using data from Japanese tuna longline fisheries. Mar. Freshw. Res. 54: 393-399.
14. _ and W. H. Bayliff. 2002. Status of striped marlin in the eastern Pacific Ocean in 2001 and outlook for 2002. Inter. Amer. Trop. Tuna Comm., Stock Assess. Rep. 3: 328-364.
15. _ and R. B. Deriso. 1998. Distribution and stock assessment of swordfish, Xiphias gladius, in the eastern Pacific Ocean from catch and effort data standardized on biological and environmental parameters. NOAA Tech. Rep. NMFS 142: 161-179.
16. _ and M. N. Maunder. 2004a. Methods for standardizing CPUE and how to select among them. Pages 169-177 in ICCAT collective volume of scientific papers 56.
17. _ and _. 2004b. Status of striped marlin in the eastern Pacific Ocean in 2002 and outlook for 2003-2004. Inter. Amer. Trop. Tuna Comm. Stock Assess. Rep. 4: 287-310.
18. _ and H. Nakano. 1996. Standardizing catch and effort statistics using physiological, ecological, or behavioral constraints and environmental data, with an application to blue marlin (Makaira nigricans) catch and effort data from the Japanese longline fisheries in the Pacific. Inter-Am. Trop. Tuna Comm. Bull. 21: 171-200.
19. Holland, K. N., R. W. Brill, and R. K. C. Chang. 1990. Horizontal and vertical movements of Pacific blue marlin captured and released using sportfishing gear. Fish. Bull. 88: 397-402.
20. Kleiber, P., M. G. Hinton, and Y. Uozumi. 2003. Stock assessment of blue marlin (Makaira nigricans) in the Pacific with Multifan-CL. Mar. Freshw. Res. 54: 349-360.
21. Langley, A., K. Bigelow, M. N. Maunder, and N. Miyabe. 2005. Longline CPUE indices for big-eye and yellowfin in the Pacific Ocean using GLM and statistical habitat standardisation methods. Western and Central Pacific Fisheries Commission Science Committee 1 Stock Assessment Working Paper 8. 40 p.
22. Longhurst, A., S. Sathyendranath, T. Platt, and C. Caverhill. 1995. An estimate of global primary production in the ocean from satellite radiometer data. J. Plankton Res. 17: 1245-1271.
23. Maunder, M. N. and A. E. Punt. 2004. Standardizing catch and effort data: a review of recent approaches. Fish. Res. 70: 141-159.
24. _, M. G. Hinton, K. A. Bigelow, and S. J. Harley. 2002. Statistical comparisons of habitat standardized effort and nominal effort. SCTB 15 MWG-7 18 p.
25. Nakano, H. and W. B. Bayliff. 1992. A review of the Japanese longline fishery for tunas and billfishes in the eastern Pacific Ocean, 1981-1987. Inter-Am. Trop. Tuna Comm. Bull. 20: 187-237.
26. Pawitan, Y. 2003. In all likelihood: statistical modeling and inference using likelihood. Oxford University Press, Oxford, UK. 528 p.
27. Prince, E. D. and C. P. Goodyear. 2006. Hypoxia-based habitat compression of tropical pelagic fishes. Fish. Ocean. 15: 451-464.
28. Ward, P. and R. A. Myers. 2005. Inferring the depth distribution of catchability for pelagic fishes and correcting for variations in the depth of longline fishing gear. Can. J. Fish. Aquat. Sci. 62: 1130-1142.