The evolutionary history of Drosophila buzzatii. XXXVI. Molecular structural analysis of Osvaldo retrotransposon insertions in colonizing populations unveils drift effects in founder events

Genetics

Volumn 175, Issue 1, 2007, Pages 301-310

  García Guerreiro, María Pilar ^a   Fontdevila, Antonio ^a  

^a UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED DNA POLYMERASE;

ARTICLE; CHEMICAL STRUCTURE; CONTROLLED STUDY; DNA FLANKING REGION; DROSOPHILA; DROSOPHILA BUZZATII; EUCHROMATIN; EVOLUTION; FOUNDER EFFECT; GENE FREQUENCY; GENE INSERTION; GENE SEQUENCE; LIFE HISTORY; MOLECULAR BIOLOGY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RETROPOSON;

ANIMALS; BASE SEQUENCE; DROSOPHILA; EVOLUTION, MOLECULAR; FEMALE; FOUNDER EFFECT; GENE DOSAGE; GENE FREQUENCY; GENES, INSECT; GENETIC DRIFT; GENETICS, POPULATION; HAPLOTYPES; MALE; MOLECULAR SEQUENCE DATA; RETROELEMENTS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

DROSOPHILA BUZZATII;

EID: 33846522246     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.064378     Document Type: Article

References (43)

1. BARKER, J. S. F., 1982 Population genetics of Opuntia breeding Drosophila, pp. 209-224 in Ecological Genetics and Evolution, edited by J. S. F. BARKER and W. T. STARMER. Academic Press, New York.
2. BARTOLOMÉ, C., and X. MASIDE, 2004 The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster. Genet. Res. 83: 91-100.
3. BARTOLOMÉ, C., X. MASIDE and B. CHARLESWORTH, 2002 On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol. Biol. Evol. 19: 926-937.
4. BERG, D. E., and M. M. HOWE, 1989 Mobile DNA. American Society for Microbiology, Washington, DC.
5. BIÉMONT, C., 1992 Population genetics of transposable DNA elements. A Drosophila point of view. Genetica 86: 67-84.
6. BIÉMONT, C., C. NARDON, G. DECELIERE, D. LEPETIT, C. LOEVENBRUCK et al., 2003 World wide distribution of transposable element copy number in natural populations of Drosophila. Evolution 57: 159-167.
7. BOWEN, N. J., and J. F. MCDONALD, 2001 Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res. 11: 1527-1540.
8. CHARLESWORTH, B., and C. H. LANGLEY, 1989 The population genetics of Drosophila transposable elements. Annu. Rev. Genet. 23: 251-287.
9. CONTE, C., V. CALCO, S. DESSET, P. LEBLANC, B. DASTUGUE et al., 2000 Impact of multiple insertions of two retroelements, Zam and Idefix at an euchromatic locus. Genetica 109: 53-59.
10. DAVID, J., and L. TSACAS, 1980 Cosmopolitan, subcosmopolitan and widespread species: different strategies within the Drosophilid family (Diptera). Comptes Rendus de la Société Biogéographique 57: 11-26.
11. DIMITRI, P., 1997 Constitutive heterochromatin and transposable elements in Drosophila melanogaster. Genetica 100: 85-93.
12. EVGEN'EV, M. B., G. N. YENIKOLOPOV, N. I. PEUNOVA and Y. V. ILYIN, 1982 Transposition of mobile genetic elements in interspecific hybrids of Drosophila. Chromosoma 85: 375-386.
13. EVGEN'EV, M. B., H. ZELENTSOVA, H. POLUECTOVA, G. T. LYOZIN, V. VELEIKODVORSKAJA et al., 2000 Mobile elements and chromosomal evolution in the virilis group of Drosophila. Proc. Natl. Acad. Sci. USA 10: 11337-11342.
14. FONTDEVILA, A., 1989 Founder effects in colonizing populations: the case of Drosophila buzzatii, pp. 74-95 in Evolutionary Biology of Transient Unstable Populations, edited by A. FONTDEVILA. Springer, Berlin.
15. FONTDEVILA, A., 1991 Colonizing species of Drosophila, pp. 249-269 in Molecular Techniques in Taxonomy, edited by G. M. HEWITT, A. W. B. JOHNSTON and J. P. W. YOUNG. Springer-Verlag, Berlin/Heidelberg, Germany.
16. FONTDEVILA, A., A. RUÍZ, G. ALONSO and J. OCAÑA, 1981 Evolutionary history of Drosophila buzzatii I. Natural chromosomal polymorphism in colonized populations of the Old World. Evolution 35: 148-156.
17. GARCÍA GUERREIRO, M. P., and A. FONTDEVILA, 2001 Chromosomal distribution of the transposable elements Osvaldo and blanco in original and colonizer populations of Drosophila buzzatii. Genet. Res. 77: 227-238.
18. HIGGINS, D. G., J. D. THOMPSON and T. J. GIBSON, 1996 Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266: 383-402.
19. KAMINKER, J. S., C. M. BERGMAN, B. KRONMILLER, J. CARLSON, R. SVIRSKAS et al., 2002 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol. 3(12): RESEARCH 0085.
20. KAPITONOV, V., and J. JURKA, 1996 The age of Alus subfamilies. J. Mol. Evol. 42: 59-65.
21. KUMAR, S., K. TAMURA, I. B. JAKOBSEN and M. NEI, 2001 MEGA-2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17: 1244-1245.
22. LABRADOR, M., and A. FONTDEVILA, 1994 High transposition rates of Osvaldo, a new D. buzzatii retrotransposon. Mol. Gen. Genet. 245: 661-674.
23. LABRADOR, M., H. NAVEIRA and A. FONTDEVILA, 1990 Genetic mapping of the Adh locus in the repleta group of Drosophila by in situ hybridization. J. Hered. 81: 83-86.
24. LABRADOR, M., M. C. SELEME and A. FONTDEVILA, 1998 The evolutionary history of D. buzzatii. XXXIV. The distribution of the retrotransposon Osvaldo in original and colonizer populations. Mol. Biol. Evol. 15: 1532-1547.
25. LERAT, E., C. RIZZON and C. BIÉMONT, 2003 Sequence divergence of transposable elements in the D. melanogaster genome. Genome Res. 13: 1889-1896.
26. LI, W., 1997 Molecular Evolution. Sinauer, Sunderland, MA.
27. MANIATIS, T. E., E. F. FRITSCH and J. SAMBROOK, 1982 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
28. MARSANO, R. M., S. MARCONI, R. MOSCHETTI, P. BARSANTI, C. CAGGESE et al., 2004 Max, a novel retrotransposon of the BEL-Pao family, is nested within the Bari 1 cluster at the heterochromatic h39 region of chromosome 2 in Drosophila melanogaster. Mol. Genet. Genomics 270: 477-484.
29. NICHOLAS, K. B., H. B. J. NICHOLAS and D. W. DEERFIELD, 1997 Genedoc: analysis and visualization of genetic variation. Embnet News 4: 14.
30. PANTAZIDIS, A., M. LABRADOR and A. FONTDEVILA, 1999 The retrotransposon Osvaldo from D. buzzatii displays all structural features of functional retrovirus. Mol. Biol. Evol. 16: 909-921.
31. PETROV, D. A., 2002 DNA loss and evolution of genome size in Drosophila. Genetica 115: 81-91.
32. PIMPINELLI, S., M. BERLOCO, L. FANTI, P. DIMITRI, S. BONACCORSI et al., 1995 Transposable elements are stable structural components of Drosophila melanogaster heterochromatin. Proc. Natl. Acad. Sci. USA 92: 3804-3808.
33. PIÑOL, J., O. FRANCINO, A. FONTDEVILA and O. CABRE, 1988 Rapid isolation of Drosophila high molecular weight DNA to obtain genomic libraries. Nucleic Acids Res. 16: 2736-2737.
34. PRESTON, B. D., and J. P. DOUGHERTY, 1996 Mechanisms of retroviral mutation. Trends Microbiol. 4: 16-21.
35. SANGER, F., S. NICKLEN and A. R. COULSON, 1977 DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
36. SCHMIDT, E. R., 1992 A simplified and efficient protocol for nonradioactive in situ hybridisation to polytene chromosomes with a DIG.-labeled DNA probe, pp. 36-38 in Non Radioactive in Situ Hybridisation Application Manual. Roche, Indianapolis.
37. SHEVELYOV, Y. Y., M. D. BALAKIREVA and V. A. GVOZDEV, 1989 Heterochromatic regions in different Drosophila melanogaster stocks contain similar arrangements of moderate repeats with inserted copia-like elements (mdg1). Chromosoma 98: 117-122.
38. SNIEGOWSKY, P. D., and B. CHARLESWORTH, 1994 Transposable element numbers in cosmopolitan inversions from a natural population of Drosophila melanogaster. Genetics 137: 815-827.
39. VAURY, C., A. BUCHETON and A. PÉLISSON, 1989 The heterochromatin sequences flanking the I elements are themselves defective transposable elements. Chromosoma 98: 215-224.
40. VIEIRA, C., and C. BIÉMONT, 1996 Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans. J. Mol. Evol. 14: 185-188.
41. VIEIRA, C., D. LEPETIT, S. DUMONT and C. BIÉMONT, 1999 Wake up of transposable elements following Drosophila simulans worldwide colonization. Mol. Biol. Evol. 16: 1251-1255.
42. VIEIRA, C., C. NARDON, C. ARPIN, D. LEPETIT and C. BIÉMONT, 2002 Evolution of genome size in Drosophila. Is the invader's genome being invaded by transposable elements? Mol. Biol. Evol. 19: 1154-1161.
43. WISOTZKEY, R., I. FELDER and A. HUNT, 1997 Biogeographic analysis of the Uhu and LOA elements in the Hawaiian Drosophila. Chromosoma 106: 465-477.