The comparison of three methods for chromosomal abnormality detection

Journal of Bioinformatics and Computational Biology

Volumn 4, Issue 6, 2006, Pages 1217-1226

  Shakuov, Timur S ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Array CGH; Intensity; Monosomy; Polysomy

Indexed keywords

ANALYTIC METHOD; ARTICLE; CHEMICAL ANALYSIS; CHROMOSOME ABERRATION; CHROMOSOME ANALYSIS; CHROMOSOME IDENTIFICATION; COMPARATIVE GENOMIC HYBRIDIZATION; GENETIC ALGORITHM; HUMAN; IMAGE PROCESSING; INFORMATION PROCESSING; INTERMETHOD COMPARISON; QUANTITATIVE ANALYSIS; SENSITIVITY AND SPECIFICITY;

ALGORITHMS; CHROMOSOME ABERRATIONS; CHROMOSOME MAPPING; DNA MUTATIONAL ANALYSIS; GENE DOSAGE; IN SITU HYBRIDIZATION, FLUORESCENCE; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 33846485173     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720006002429     Document Type: Article

References (7)

1. Lejeune J, Gautier M, Turpin R, Mongolism; a chromosomal disease (trisomy), Bull Acad Natl Med 143:256-265, 1959.
2. 1 and chromosome 21 in human chronic granulocytic leukemia, Science 144:1229-1232, 1964.
3. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D, Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors, Science 258:818-821, 1992.
4. Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG, Assembly of microarrays for genomewide measurement of DNA copy number, Nature Gen 29:263-264, 2001.
5. Price TS, Regan R, Mott R, Hedman A, Honey B, Daniels RJ, Smith L, Greenfield A, Tiganescu A, Buckle V, Ventress N, Ayyub H, Salhan A, Pedraza-Diaz S, Broxholme J, Ragoussis J, Higgs DR, Flint J, Knight SJL, SW-ARRAY: A dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data, Nucleic Acids Res 33:3455-3464, 2005.
6. Canny J, A Computational approach to edge detection, ITPAM PAMI-8(6):679-697, 1986.
7. Leontovich AM, Brodsky LI, Gorbalenya AE, Construction of the full local similarity map for two biopolymers, BioSystems 30(1-3):57-63, 1993.