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Volumn 64, Issue 2, 2007, Pages 223-236

Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae

Author keywords

Cryptomonad algae; Nuclear genomes; Retrotransposons; Tandem repeat sequences

Indexed keywords

ALGA; ARTICLE; CLONE; CRYPTOPHYTA; ENDOSYMBIONT; EUKARYOTE; EVOLUTION; GENE SEQUENCE; GENOME; GENOMIC FRAGMENT; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYNTHESIS; POLYMERASE CHAIN REACTION; RETROPOSON; SOUTHERN BLOTTING; TANDEM REPEAT;

EID: 33846453971     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-006-0088-9     Document Type: Article
Times cited : (11)

References (71)
  • 3
    • 25144471592 scopus 로고    scopus 로고
    • Jumping genes and shrinking genomes - probing the evolution of eukaryotic photosynthesis using genomics
    • Archibald JM (2005) Jumping genes and shrinking genomes - probing the evolution of eukaryotic photosynthesis using genomics. IUBMB Life 57:539-547
    • (2005) IUBMB Life , vol.57 , pp. 539-547
    • Archibald, J.M.1
  • 4
    • 0036843244 scopus 로고    scopus 로고
    • Recycled plastids: A green movement in eukaryotic evolution
    • Archibald JM, Keeling PJ (2002) Recycled plastids: a green movement in eukaryotic evolution. Trends Genet 18:577-584
    • (2002) Trends Genet , vol.18 , pp. 577-584
    • Archibald, J.M.1    Keeling, P.J.2
  • 5
    • 25144477714 scopus 로고    scopus 로고
    • On the origin and evolution of plastids
    • Saap J ed, Oxford University Press, New York, pp
    • Archibald JM, Keeling PJ (2005) On the origin and evolution of plastids. In: Saap J (ed) Microbial phylogeny and evolution. Oxford University Press, New York, pp 238-260
    • (2005) Microbial phylogeny and evolution , pp. 238-260
    • Archibald, J.M.1    Keeling, P.J.2
  • 6
    • 0034980698 scopus 로고    scopus 로고
    • Molecular chaperones encoded by a reduced nucleus - the cryptomonad nucleomorph
    • Archibald JM, Cavalier-Smith T, Maier U, Douglas S (2001) Molecular chaperones encoded by a reduced nucleus - the cryptomonad nucleomorph. J Mol Evol 52:490-501
    • (2001) J Mol Evol , vol.52 , pp. 490-501
    • Archibald, J.M.1    Cavalier-Smith, T.2    Maier, U.3    Douglas, S.4
  • 7
    • 0038714278 scopus 로고    scopus 로고
    • Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
    • Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ (2003) Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci USA 100:7678-7683
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 7678-7683
    • Archibald, J.M.1    Rogers, M.B.2    Toop, M.3    Ishida, K.4    Keeling, P.J.5
  • 8
    • 6044252163 scopus 로고    scopus 로고
    • Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kroger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS (2004) The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306:79-86
    • Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kroger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS (2004) The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306:79-86
  • 9
    • 0033595715 scopus 로고    scopus 로고
    • Eukaryotic non-coding DNA is functional: Evidence from the differential scaling of cryptomonad genomes
    • Beaton M, Cavalier-Smith T (1999) Eukaryotic non-coding DNA is functional: evidence from the differential scaling of cryptomonad genomes. Proc R Soc Lond B 266:2053-2059
    • (1999) Proc R Soc Lond B , vol.266 , pp. 2053-2059
    • Beaton, M.1    Cavalier-Smith, T.2
  • 10
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573-580
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 11
    • 0347635417 scopus 로고    scopus 로고
    • Photosynthetic eukaryotes unite: Endosymbiosis connects the dots
    • Bhattacharya D, Yoon HS, Hackett JD (2003) Photosynthetic eukaryotes unite: endosymbiosis connects the dots. Bioessays 26:50-60
    • (2003) Bioessays , vol.26 , pp. 50-60
    • Bhattacharya, D.1    Yoon, H.S.2    Hackett, J.D.3
  • 12
    • 20644433743 scopus 로고    scopus 로고
    • Do plastid-related characters support the chromalveolate hypothesis?
    • Bodyl A (2005) Do plastid-related characters support the chromalveolate hypothesis? J Phycol 41:712-719
    • (2005) J Phycol , vol.41 , pp. 712-719
    • Bodyl, A.1
  • 13
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T (1999) Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46:347-366
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 14
    • 0033789676 scopus 로고    scopus 로고
    • Evidence for nucleomorph to host nucleus gene transfer: Light-harvesting complex proteins from cryptomonads and chlorarachniophytes
    • Deane JA, Fraunholz M, Su V, Maier UG, Martin W, Durnford DG, McFadden GI (2000) Evidence for nucleomorph to host nucleus gene transfer: light-harvesting complex proteins from cryptomonads and chlorarachniophytes. Protist 151:239-252
    • (2000) Protist , vol.151 , pp. 239-252
    • Deane, J.A.1    Fraunholz, M.2    Su, V.3    Maier, U.G.4    Martin, W.5    Durnford, D.G.6    McFadden, G.I.7
  • 15
    • 0025776579 scopus 로고
    • A sequence assembly and editing program for efficient management of large projects
    • Dear S, Staden R (1991) A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res 19:3907-3911
    • (1991) Nucleic Acids Res , vol.19 , pp. 3907-3911
    • Dear, S.1    Staden, R.2
  • 16
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche CF (1999) Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154(Suppl):S164-S177
    • (1999) Am Nat , vol.154 , Issue.SUPPL.
    • Delwiche, C.F.1
  • 17
    • 0032900424 scopus 로고    scopus 로고
    • The plastid genome from the cryptomonad alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
    • Douglas SE, Penny SL (1999) The plastid genome from the cryptomonad alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol 48:236-244
    • (1999) J Mol Evol , vol.48 , pp. 236-244
    • Douglas, S.E.1    Penny, S.L.2
  • 18
    • 0026423881 scopus 로고
    • Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes
    • Douglas SE, Murphy CA, Spencer DF, Gray MW (1991) Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes. Nature 350:148-151
    • (1991) Nature , vol.350 , pp. 148-151
    • Douglas, S.E.1    Murphy, C.A.2    Spencer, D.F.3    Gray, M.W.4
  • 20
    • 15544363206 scopus 로고    scopus 로고
    • A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses
    • Dusan K (2005) A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses. Gene 347:161-173
    • (2005) Gene , vol.347 , pp. 161-173
    • Dusan, K.1
  • 21
    • 0035812294 scopus 로고    scopus 로고
    • Molecular biology of the chromo domain: An ancient chromatin module comes of age
    • Eissenberg JC (2001) Molecular biology of the chromo domain: an ancient chromatin module comes of age. Gene 275:19-29
    • (2001) Gene , vol.275 , pp. 19-29
    • Eissenberg, J.C.1
  • 22
    • 22244453726 scopus 로고    scopus 로고
    • El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B (2005a) The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 3
    • El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S , Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B (2005a) The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 309:409-415
  • 23
    • 22244472295 scopus 로고    scopus 로고
    • El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N (2005b) Comparative genomics of trypanosomatid parasitic protozoa. Science 309:404-409
    • El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N (2005b) Comparative genomics of trypanosomatid parasitic protozoa. Science 309:404-409
  • 25
    • 0023058739 scopus 로고
    • Repetitive DNA and chromosome evolution in plants
    • Flavell RB (1986) Repetitive DNA and chromosome evolution in plants. Philos Trans R Soc Lond B Biol Sci 312:227-42
    • (1986) Philos Trans R Soc Lond B Biol Sci , vol.312 , pp. 227-242
    • Flavell, R.B.1
  • 26
    • 0345305427 scopus 로고    scopus 로고
    • Translational recoding signals between gag and pol in diverse LTR retrotransposons
    • Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF (2003) Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA 9:1422-1430
    • (2003) RNA , vol.9 , pp. 1422-1430
    • Gao, X.1    Havecker, E.R.2    Baranov, P.V.3    Atkins, J.F.4    Voytas, D.F.5
  • 27
    • 0037015614 scopus 로고    scopus 로고
    • Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419:498-511
    • Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419:498-511
  • 28
    • 21644437935 scopus 로고    scopus 로고
    • Gardner MJ, Bishop R, Shah T, de Villiers EP , Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, Silva JC, Utterback TR, Feldblyum TV, Pertea M, Allen J, Nierman WC, Taracha EL, Salzberg SL, White OR, Fitzhugh HA, Morzaria S, Venter JC, Fraser CM, Nene V (2005) Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science 309:134-137
    • Gardner MJ, Bishop R, Shah T, de Villiers EP , Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, Silva JC, Utterback TR, Feldblyum TV, Pertea M, Allen J, Nierman WC, Taracha EL, Salzberg SL, White OR, Fitzhugh HA, Morzaria S, Venter JC, Fraser CM, Nene V (2005) Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science 309:134-137
  • 29
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685-695
    • (1997) Mol Biol Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 30
    • 0034888792 scopus 로고    scopus 로고
    • Gilson PR (2001) Nucleomorph genomes: much ado about practically nothing. Genome Biol 2:REVIEWS1022
    • Gilson PR (2001) Nucleomorph genomes: much ado about practically nothing. Genome Biol 2:REVIEWS1022
  • 31
    • 0036021692 scopus 로고    scopus 로고
    • Jam packed genomes - a preliminary, comparative analysis of nucleomorphs
    • Gilson PR, McFadden GI (2002) Jam packed genomes - a preliminary, comparative analysis of nucleomorphs. Genetica 115:13-28
    • (2002) Genetica , vol.115 , pp. 13-28
    • Gilson, P.R.1    McFadden, G.I.2
  • 32
    • 33745476746 scopus 로고    scopus 로고
    • From the cover: Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus
    • Gilson PR, Su V, Slamovits CH, Reith ME, Keeling PJ, McFadden GI (2006) From the cover: complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus. Proc Natl Acad Sci USA 103:9566-9571
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9566-9571
    • Gilson, P.R.1    Su, V.2    Slamovits, C.H.3    Reith, M.E.4    Keeling, P.J.5    McFadden, G.I.6
  • 33
    • 1942498768 scopus 로고    scopus 로고
    • Evolutionary genomics of chromoviruses in eukaryotes
    • Gorinsek B, Gubensek F, Kordis D (2004) Evolutionary genomics of chromoviruses in eukaryotes. Mol Biol Evol 21:781-798
    • (2004) Mol Biol Evol , vol.21 , pp. 781-798
    • Gorinsek, B.1    Gubensek, F.2    Kordis, D.3
  • 34
    • 0035090476 scopus 로고    scopus 로고
    • Coincidence, coevolution or causation? DNA content, cell size, and the C-value enigma
    • Gregory TR (2001) Coincidence, coevolution or causation? DNA content, cell size, and the C-value enigma. Biol Rev 76:65-101
    • (2001) Biol Rev , vol.76 , pp. 65-101
    • Gregory, T.R.1
  • 35
    • 19544376410 scopus 로고    scopus 로고
    • The C-value enigma in plants and animals: A review of parallels and an appeal for partnership
    • Gregory TR (2005) The C-value enigma in plants and animals: a review of parallels and an appeal for partnership. Ann Bot 95:133-146
    • (2005) Ann Bot , vol.95 , pp. 133-146
    • Gregory, T.R.1
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 37
    • 0036021704 scopus 로고    scopus 로고
    • Genome size and the accumulation of simple sequence repeats: Implications of new data from genome sequencing projects
    • Hancock JM (2002) Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects. Genetica 115:93-103
    • (2002) Genetica , vol.115 , pp. 93-103
    • Hancock, J.M.1
  • 38
    • 13244270095 scopus 로고    scopus 로고
    • On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper JT, Waanders E, Keeling PJ (2005) On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 55:487-496
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 39
    • 23344435198 scopus 로고    scopus 로고
    • The Rhodomonas salina mitochondrial genome: Bacteria-like operons, compact gene arrangement and complex repeat region
    • Hauth AM, Maier UG, Lang BF, Burger G (2005) The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region. Nucleic Acids Res 33:4433-4442
    • (2005) Nucleic Acids Res , vol.33 , pp. 4433-4442
    • Hauth, A.M.1    Maier, U.G.2    Lang, B.F.3    Burger, G.4
  • 41
    • 16444372009 scopus 로고    scopus 로고
    • Multiple independent losses of photosynthesis and differing evolutionary rates in the genus Cryptomonas (Cryptophyceae): Combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons
    • Hoef-Emden K (2005) Multiple independent losses of photosynthesis and differing evolutionary rates in the genus Cryptomonas (Cryptophyceae): combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons. J Mol Evol 60:183-195
    • (2005) J Mol Evol , vol.60 , pp. 183-195
    • Hoef-Emden, K.1
  • 42
    • 0036301949 scopus 로고    scopus 로고
    • Nuclear and nucleomorph SSU rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity
    • Hoef-Emden K, Marin B, Melkonian M (2002) Nuclear and nucleomorph SSU rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity. J Mol Evol 55:161-179
    • (2002) J Mol Evol , vol.55 , pp. 161-179
    • Hoef-Emden, K.1    Marin, B.2    Melkonian, M.3
  • 43
    • 0031450395 scopus 로고    scopus 로고
    • The origin of chlorarachniophyte plastids, as inferred from phylogenetic comparisons of amino acid sequences of EF-Tu
    • Ishida K, Cao Y, Hasegawa M, Okada N, Hara Y (1997) The origin of chlorarachniophyte plastids, as inferred from phylogenetic comparisons of amino acid sequences of EF-Tu. J Mol Evol 45:682-687
    • (1997) J Mol Evol , vol.45 , pp. 682-687
    • Ishida, K.1    Cao, Y.2    Hasegawa, M.3    Okada, N.4    Hara, Y.5
  • 44
    • 0032989696 scopus 로고    scopus 로고
    • Ishida K, Green BR, Cavalier-Smith T (1999) Diversification of a chimaeric algal group, the chlorarachniophytes: phylogeny of nuclear and nucleomorph small-subunit rRNA genes. Mol Biol Evol 16:321-331
    • Ishida K, Green BR, Cavalier-Smith T (1999) Diversification of a chimaeric algal group, the chlorarachniophytes: phylogeny of nuclear and nucleomorph small-subunit rRNA genes. Mol Biol Evol 16:321-331
  • 45
    • 13244259056 scopus 로고    scopus 로고
    • Diversity and evolutionary history of plastids and their hosts
    • Keeling PJ (2004) Diversity and evolutionary history of plastids and their hosts. Am J Bot 91:1481-1493
    • (2004) Am J Bot , vol.91 , pp. 1481-1493
    • Keeling, P.J.1
  • 47
    • 0036021699 scopus 로고    scopus 로고
    • Transposable elements and the evolution of genome size in eukaryotes
    • Kidwell MG (2002) Transposable elements and the evolution of genome size in eukaryotes. Genetica 115:49-63
    • (2002) Genetica , vol.115 , pp. 49-63
    • Kidwell, M.G.1
  • 48
    • 15544363206 scopus 로고    scopus 로고
    • A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses
    • Kordis D (2005) A genomic perspective on the chromodomain-containing retrotransposons: chromoviruses. Gene 347:161-173
    • (2005) Gene , vol.347 , pp. 161-173
    • Kordis, D.1
  • 50
    • 2042437650 scopus 로고    scopus 로고
    • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, S
    • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M et al. (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
  • 52
    • 0029033912 scopus 로고
    • A novel mechanism of self-primed reverse transcription defines a new family of retroelements
    • Levin HL (1995) A novel mechanism of self-primed reverse transcription defines a new family of retroelements. Mol Cell Biol 15:3310-3317
    • (1995) Mol Cell Biol , vol.15 , pp. 3310-3317
    • Levin, H.L.1
  • 53
    • 33644520519 scopus 로고    scopus 로고
    • Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC (2006) The genomes on line database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res 34:D332-334
    • Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC (2006) The genomes on line database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res 34:D332-334
  • 54
    • 14544294428 scopus 로고    scopus 로고
    • Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillen N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Sayed NM, Petri WA Jr, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N (2005) The genome of the protist parasite Entamoeba histolytica. Nature 433:865-868
    • Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillen N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Sayed NM, Petri WA Jr, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N (2005) The genome of the protist parasite Entamoeba histolytica. Nature 433:865-868
  • 55
    • 0033057257 scopus 로고    scopus 로고
    • Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons
    • Malik HS, Eickbush TH (1999) Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J Virol 73:5186-5190
    • (1999) J Virol , vol.73 , pp. 5186-5190
    • Malik, H.S.1    Eickbush, T.H.2
  • 56
    • 0343090765 scopus 로고    scopus 로고
    • Ty3/Gypsy retrotransposons: Description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data
    • Marín I, Lloréns C (2000) Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data. Mol Biol Evol 17:1040-1049
    • (2000) Mol Biol Evol , vol.17 , pp. 1040-1049
    • Marín, I.1    Lloréns, C.2
  • 57
    • 11144354393 scopus 로고    scopus 로고
    • Matsuzaki M, Misumi O, Shin IT, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T (2004) Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428:653-657
    • Matsuzaki M, Misumi O, Shin IT, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T (2004) Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428:653-657
  • 58
    • 0001754542 scopus 로고
    • Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences
    • McFadden GI, Gilson PR, Waller RF (1995) Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences. Arch Protistenkd 145:231-239
    • (1995) Arch Protistenkd , vol.145 , pp. 231-239
    • McFadden, G.I.1    Gilson, P.R.2    Waller, R.F.3
  • 59
    • 0346432464 scopus 로고    scopus 로고
    • Genome diversity in microbial eukaryotes
    • McGrath CL, Katz LA (2004) Genome diversity in microbial eukaryotes. Trends Ecol Evol 19:32-38
    • (2004) Trends Ecol Evol , vol.19 , pp. 32-38
    • McGrath, C.L.1    Katz, L.A.2
  • 60
    • 0032169874 scopus 로고    scopus 로고
    • Organisation and informational content of the Theileria parva genome
    • Nene V, Morzaria S, Bishop R (1998) Organisation and informational content of the Theileria parva genome. Mol Biochem Parasitol 95:1-8
    • (1998) Mol Biochem Parasitol , vol.95 , pp. 1-8
    • Nene, V.1    Morzaria, S.2    Bishop, R.3
  • 62
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: How many times and whodunnit?
    • Palmer JD (2003) The symbiotic birth and spread of plastids: How many times and whodunnit? J Phycol 39:4-11
    • (2003) J Phycol , vol.39 , pp. 4-11
    • Palmer, J.D.1
  • 63
    • 0028170971 scopus 로고
    • The presence of a nucleomorph hsp70 gene is a common feature of Cryptophyta and Chlorarachniophyta
    • Rensing SA, Goddemeier M, Hofmann CJ, Maier UG (1994) The presence of a nucleomorph hsp70 gene is a common feature of Cryptophyta and Chlorarachniophyta. Curr Genet 26:451-455
    • (1994) Curr Genet , vol.26 , pp. 451-455
    • Rensing, S.A.1    Goddemeier, M.2    Hofmann, C.J.3    Maier, U.G.4
  • 64
    • 18744429949 scopus 로고    scopus 로고
    • Genomic repetitive DNA elements of Trypanosoma cruzi
    • Requena JM, Lopez MC, Alonso C (1996) Genomic repetitive DNA elements of Trypanosoma cruzi. Parasitol Today 12:279-283
    • (1996) Parasitol Today , vol.12 , pp. 279-283
    • Requena, J.M.1    Lopez, M.C.2    Alonso, C.3
  • 67
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    von Haeseler, A.2
  • 68
    • 0032249767 scopus 로고    scopus 로고
    • The origin of red algae and cryptomonad nucleomorphs: A comparative phylogeny based on small and large subunit rRNA sequences of Palmaria palmata, Gracilaria verrucosa, and the Guillardia theta nucleomorph
    • Van der Auwera G, Hofmann CJB, De Rijk P, De Wachter R (1998) The origin of red algae and cryptomonad nucleomorphs: A comparative phylogeny based on small and large subunit rRNA sequences of Palmaria palmata, Gracilaria verrucosa, and the Guillardia theta nucleomorph. Mol Phylogenet Evol 10:333-342
    • (1998) Mol Phylogenet Evol , vol.10 , pp. 333-342
    • Van der Auwera, G.1    Hofmann, C.J.B.2    De Rijk, P.3    De Wachter, R.4
  • 69
    • 0141566304 scopus 로고    scopus 로고
    • Repetitive elements in genomes of parasitic protozoa
    • Wickstead B, Ersfeld K, Gull K (2003) Repetitive elements in genomes of parasitic protozoa. Microbiol Mol Biol Rev 67:360-375
    • (2003) Microbiol Mol Biol Rev , vol.67 , pp. 360-375
    • Wickstead, B.1    Ersfeld, K.2    Gull, K.3


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