-
1
-
-
0020394792
-
Phycobilisomes, structure and dynamics
-
Glazer A.N. Phycobilisomes, structure and dynamics. Annu. Rev. Microbiol. 36 (1982) 173-198
-
(1982)
Annu. Rev. Microbiol.
, vol.36
, pp. 173-198
-
-
Glazer, A.N.1
-
2
-
-
0019876123
-
Association of Phycoerythrin and Phycocyanin: in vitro formation of a functional energy transferring phycobilisome complex of Porphyridium sordidum
-
Lipschutz C., and Gantt E. Association of Phycoerythrin and Phycocyanin: in vitro formation of a functional energy transferring phycobilisome complex of Porphyridium sordidum. Biochemistry 20 (1981) 3371-3376
-
(1981)
Biochemistry
, vol.20
, pp. 3371-3376
-
-
Lipschutz, C.1
Gantt, E.2
-
3
-
-
0020683752
-
Molecular architecture of a light harvesting antennae. Core substructure in Synechococcus 6301 phycobilisomes: two new allophycocyanins and allophycocyanin B complexes
-
Lundell D., and Glazer A.N. Molecular architecture of a light harvesting antennae. Core substructure in Synechococcus 6301 phycobilisomes: two new allophycocyanins and allophycocyanin B complexes. J. Biol. Chem. 258 (1983) 902-908
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 902-908
-
-
Lundell, D.1
Glazer, A.N.2
-
4
-
-
0029994573
-
Isolation, characterization and electron microscopy analysis of a hemidiscoidal phycobilisome type from the cyanobacteria Anabaena sp PCC7120
-
Ducret A., Sidler W., Wehrli E., Frank G., and Huber R. Isolation, characterization and electron microscopy analysis of a hemidiscoidal phycobilisome type from the cyanobacteria Anabaena sp PCC7120. Eur. J. Biochem. 236 (1996) 1010-1024
-
(1996)
Eur. J. Biochem.
, vol.236
, pp. 1010-1024
-
-
Ducret, A.1
Sidler, W.2
Wehrli, E.3
Frank, G.4
Huber, R.5
-
6
-
-
0006674490
-
Characterization of phycobiliproteins present in Gracilaria chilensis
-
Bunster M., Tellez J., and Candia A. Characterization of phycobiliproteins present in Gracilaria chilensis. Bol. Soc. Chil. Quím. 42 (1997) 449-455
-
(1997)
Bol. Soc. Chil. Quím.
, vol.42
, pp. 449-455
-
-
Bunster, M.1
Tellez, J.2
Candia, A.3
-
7
-
-
0035182197
-
Crystallization and 2.2 Å resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of a perfect hemihedral twinning
-
Contreras-Martel C., Martínez-Oyanedel J., Bunster M., Legrand P., Piras C., Venerde X., and Fontecilla-Camps J.C. Crystallization and 2.2 Å resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of a perfect hemihedral twinning. Acta Crystallogr., D Biol. Crystallogr. 57 (2001) 52-60
-
(2001)
Acta Crystallogr., D Biol. Crystallogr.
, vol.57
, pp. 52-60
-
-
Contreras-Martel, C.1
Martínez-Oyanedel, J.2
Bunster, M.3
Legrand, P.4
Piras, C.5
Venerde, X.6
Fontecilla-Camps, J.C.7
-
8
-
-
0025967561
-
Isolation, crystallization, crystal structure analysis and refinement of constitutive C-phycocyanin from the chromatically adapting cyanobacterium, Fremyella diplosiphon at 1.6 Å resolution
-
Duerring M., Schmidt G.B., and Huber R. Isolation, crystallization, crystal structure analysis and refinement of constitutive C-phycocyanin from the chromatically adapting cyanobacterium, Fremyella diplosiphon at 1.6 Å resolution. J. Mol. Biol. 217 (1991) 577-592
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 577-592
-
-
Duerring, M.1
Schmidt, G.B.2
Huber, R.3
-
9
-
-
0034989667
-
Structure of C-phycocyanin from Spirulina platensis at 2.2 Å resolution: a novel monoclinic crystal form for phycobiliproteins in phycobilisomes
-
Wang X.-Q., Li L.-N., Chang W.R., and Liang D.C. Structure of C-phycocyanin from Spirulina platensis at 2.2 Å resolution: a novel monoclinic crystal form for phycobiliproteins in phycobilisomes. Acta Crystallogr., D Biol. Crystallogr. 57 (2001) 784-792
-
(2001)
Acta Crystallogr., D Biol. Crystallogr.
, vol.57
, pp. 784-792
-
-
Wang, X.-Q.1
Li, L.-N.2
Chang, W.R.3
Liang, D.C.4
-
10
-
-
0035850751
-
Structure of c-phycocyanin from the thermophilic cyanobacterium Synechococcus vulcanus at 2.5 A: structural implications for thermal stability in phycobilisome assembly
-
Adir N., Dobrovetsky Y., and Lerner N. Structure of c-phycocyanin from the thermophilic cyanobacterium Synechococcus vulcanus at 2.5 A: structural implications for thermal stability in phycobilisome assembly. J. Mol. Biol. 313 (2001) 71-81
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 71-81
-
-
Adir, N.1
Dobrovetsky, Y.2
Lerner, N.3
-
11
-
-
0037010843
-
Refined Structure of C-phycocyanin from the Cyanobacterium Synechococcus vulcanus at 1.6 Å: insights in the role of solvent molecules in thermal stability and co-factor structure
-
Adir N., Vainer R., and Lerner V. Refined Structure of C-phycocyanin from the Cyanobacterium Synechococcus vulcanus at 1.6 Å: insights in the role of solvent molecules in thermal stability and co-factor structure. Biochim. Biophys. Acta 1556 (2002) 168-174
-
(2002)
Biochim. Biophys. Acta
, vol.1556
, pp. 168-174
-
-
Adir, N.1
Vainer, R.2
Lerner, V.3
-
12
-
-
0037291310
-
The 1.45 Å three dimensional structure of C-phycocyanin from the thermophylic Cyanobacterium Synechococcus elongatus
-
Nield J., Rizkallah P.J., Barber J., and Chayen N.E. The 1.45 Å three dimensional structure of C-phycocyanin from the thermophylic Cyanobacterium Synechococcus elongatus. J. Struct. Biol. 141 (2003) 149-155
-
(2003)
J. Struct. Biol.
, vol.141
, pp. 149-155
-
-
Nield, J.1
Rizkallah, P.J.2
Barber, J.3
Chayen, N.E.4
-
13
-
-
0030580059
-
Crystal structure of R-phycoerythrin from Polisiphonia urceolata at 2.0 Å resolution
-
Chang W.R., Jiang T., Wang Z.L., Yang Z.X., and Liang D.C. Crystal structure of R-phycoerythrin from Polisiphonia urceolata at 2.0 Å resolution. J. Mol. Biol. 262 (1996) 721-731
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 721-731
-
-
Chang, W.R.1
Jiang, T.2
Wang, Z.L.3
Yang, Z.X.4
Liang, D.C.5
-
14
-
-
0033047094
-
Crystal structure of C-phycocyanin from Cyanidium caldarium provides a new perspective on phycobilisome assembly
-
Stec B., Troxler R.F., and Teeter M.M. Crystal structure of C-phycocyanin from Cyanidium caldarium provides a new perspective on phycobilisome assembly. Biophys. J. 76 (1999) 2912-2921
-
(1999)
Biophys. J.
, vol.76
, pp. 2912-2921
-
-
Stec, B.1
Troxler, R.F.2
Teeter, M.M.3
-
15
-
-
0039143551
-
Direct measurement of excitation transfer dynamics between two trimers in C-phycocyanin hexamer from Cyanobacterium Anabaena variabilis
-
Zhang J., Zhao F., Zheng X., and Wang H. Direct measurement of excitation transfer dynamics between two trimers in C-phycocyanin hexamer from Cyanobacterium Anabaena variabilis. Chem. Phys. Lett. 304 (1999) 357-364
-
(1999)
Chem. Phys. Lett.
, vol.304
, pp. 357-364
-
-
Zhang, J.1
Zhao, F.2
Zheng, X.3
Wang, H.4
-
16
-
-
0027205092
-
Computer simulation of energy migration on C-phycocyanin of the blue green algae Agmenellum quadruplicatum
-
Demidov A.A., and Borisov A.Y. Computer simulation of energy migration on C-phycocyanin of the blue green algae Agmenellum quadruplicatum. Biophys. J. 64 (1993) 1375-1384
-
(1993)
Biophys. J.
, vol.64
, pp. 1375-1384
-
-
Demidov, A.A.1
Borisov, A.Y.2
-
17
-
-
0035348604
-
Spectroscopic study of the Light harvesting protein C-phycocyanin associated with colorless linker peptides
-
Pizarro S.A., and Sauer K. Spectroscopic study of the Light harvesting protein C-phycocyanin associated with colorless linker peptides. Photochem. Photobiol. 73 (2001) 556-563
-
(2001)
Photochem. Photobiol.
, vol.73
, pp. 556-563
-
-
Pizarro, S.A.1
Sauer, K.2
-
18
-
-
33846445053
-
-
Florkin M., and Stotz E. (Eds), Elsevier, Amsterdam
-
Förster T. In: Florkin M., and Stotz E. (Eds). Comprehensive Biochemistry. Mechanism of Energy Transfer vol. 2 (1967), Elsevier, Amsterdam 261-280
-
(1967)
Mechanism of Energy Transfer
, vol.2
, pp. 261-280
-
-
Förster, T.1
-
19
-
-
0029307218
-
Comparison of calculated and experimentally resolved rate constants for excitation energy transfer in C-phycocyanins, 1. Monomers
-
Debreczny M.-P., Sauer K., Zhou J., and Bryant D.A. Comparison of calculated and experimentally resolved rate constants for excitation energy transfer in C-phycocyanins, 1. Monomers. J. Phys. Chem. 99 (1995) 8412-8419
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 8412-8419
-
-
Debreczny, M.-P.1
Sauer, K.2
Zhou, J.3
Bryant, D.A.4
-
20
-
-
0029305364
-
Comparison of calculated and experimentally resolved rate constants for excitation energy transfer in C-phycocyanins, 2. Trimers
-
Debreczny M.-P., Sauer K., Zhou J., and Bryant D.A. Comparison of calculated and experimentally resolved rate constants for excitation energy transfer in C-phycocyanins, 2. Trimers. J. Phys. Chem. 99 (1995) 8420-8431
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 8420-8431
-
-
Debreczny, M.-P.1
Sauer, K.2
Zhou, J.3
Bryant, D.A.4
-
21
-
-
0015385724
-
Phycobilisomes from Porphyridium cruemtum
-
Gantt E., and Lipschutz C.A. Phycobilisomes from Porphyridium cruemtum. J. Cell Biol. 54 (1972) 313-324
-
(1972)
J. Cell Biol.
, vol.54
, pp. 313-324
-
-
Gantt, E.1
Lipschutz, C.A.2
-
22
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26 (1993) 795-800
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
23
-
-
84944817135
-
The molecular replacement method
-
Rossman M. The molecular replacement method. Acta Crystallogr., A 46 (1990) 73-82
-
(1990)
Acta Crystallogr., A
, vol.46
, pp. 73-82
-
-
Rossman, M.1
-
24
-
-
84920325457
-
AmoRe: an automated package for molecular replacement
-
Navaza J. AmoRe: an automated package for molecular replacement. Acta Crystallogr., A 50 (1994) 157-163
-
(1994)
Acta Crystallogr., A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
25
-
-
3543012707
-
Crystallography and NMR System (CNS): a new software system for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kuntsleve R.W., Jiang J.-S., Kuszewski J., Nilges N., Pannu N.S., Read R.J., Rice L.M., Simonson T., and Warren G.L. Crystallography and NMR System (CNS): a new software system for macromolecular structure determination. Acta Crystallogr., D Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr., D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kuntsleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, N.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
26
-
-
0003838966
-
-
Silicon Graphics, Mountain View, CA, USA
-
Roussel A., and Cambillau C. Silicon Graphics Geometry Partners Directory, The Turbo-Frodo Graphics Page (1991), Silicon Graphics, Mountain View, CA, USA
-
(1991)
Silicon Graphics Geometry Partners Directory, The Turbo-Frodo Graphics Page
-
-
Roussel, A.1
Cambillau, C.2
-
27
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowsky R., McArthur M., Moss D., and Thornton J. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26 (1993) 283-291
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowsky, R.1
McArthur, M.2
Moss, D.3
Thornton, J.4
-
28
-
-
0037093643
-
Docking unbound proteins using shape complementarity, desolvation and electrostatics
-
Chen R., and Weng Z. Docking unbound proteins using shape complementarity, desolvation and electrostatics. Proteins 47 (2002) 281-294
-
(2002)
Proteins
, vol.47
, pp. 281-294
-
-
Chen, R.1
Weng, Z.2
-
29
-
-
0038526303
-
ZDOCK: an initial stage protein docking algorithm
-
Chen R., Li L., and Weng Z. ZDOCK: an initial stage protein docking algorithm. Proteins 52 (2003) 80-87
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
30
-
-
0037388679
-
Protein-protein interactions as a target for drugs in proteomics
-
Archarov A., Govorum V., Dubanov A., Ivanov Y., Veselovsky A., Lewi P., and Jansen O. Protein-protein interactions as a target for drugs in proteomics. Proteomics 3 (2003) 380-391
-
(2003)
Proteomics
, vol.3
, pp. 380-391
-
-
Archarov, A.1
Govorum, V.2
Dubanov, A.3
Ivanov, Y.4
Veselovsky, A.5
Lewi, P.6
Jansen, O.7
-
31
-
-
0037609791
-
Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces
-
Ma B., Elkayam T., Wolfson H., and Nussinov R. Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 5772-5777
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 5772-5777
-
-
Ma, B.1
Elkayam, T.2
Wolfson, H.3
Nussinov, R.4
-
32
-
-
0032568540
-
Free energy of burying hydrophobic residues in the interface between protein subunits
-
Vallone B., Miele A., Vecchini P., Chiancone E., and Brunori M. Free energy of burying hydrophobic residues in the interface between protein subunits. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 6103-6107
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 6103-6107
-
-
Vallone, B.1
Miele, A.2
Vecchini, P.3
Chiancone, E.4
Brunori, M.5
-
33
-
-
0029109468
-
-
http://www.biochem.ucl.ac.uk/bsm/PP/server/index.html
-
Jones S., and Thornton J.M. Progress in Biophysics and Molecular Biology. Protein-Protein Interactions: A Review of Protein Dimer Structures vol. 63 (1995) 31-165. http://www.biochem.ucl.ac.uk/bsm/PP/server/index.html http://www.biochem.ucl.ac.uk/bsm/PP/server/index.html
-
(1995)
Protein-Protein Interactions: A Review of Protein Dimer Structures
, vol.63
, pp. 31-165
-
-
Jones, S.1
Thornton, J.M.2
-
34
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald I.K., and Thornton J.M. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238 (1994) 777-793
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
35
-
-
33645941402
-
The OPLS force field for proteins. Energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen W.L., and Tirado-Rives J. The OPLS force field for proteins. Energy minimizations for crystals of cyclic peptides and crambin. J. Am. Chem. Soc. 110 (1988) 1657-1666
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
36
-
-
0029633154
-
Computer simulation of protein motion
-
Van Gunsteren W.F., Hünenberger P.H., Mark A.E., Smith P.E., and Tironi I.G. Computer simulation of protein motion. Comput. Phys. Commun. 91 (1995) 305-319
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 305-319
-
-
Van Gunsteren, W.F.1
Hünenberger, P.H.2
Mark, A.E.3
Smith, P.E.4
Tironi, I.G.5
-
37
-
-
84981660711
-
Photophysical properties of phycobiliproteins from phycobilisomes: fluorescent lifetimes quantum yields and polarization spectra
-
Grabowsky J., and Gantt E. Photophysical properties of phycobiliproteins from phycobilisomes: fluorescent lifetimes quantum yields and polarization spectra. Photochem. Photobiol. 28 (1978) 39-45
-
(1978)
Photochem. Photobiol.
, vol.28
, pp. 39-45
-
-
Grabowsky, J.1
Gantt, E.2
-
38
-
-
0033621630
-
Förster energy transfer in peridinin-chlorophyll-a-protein
-
Kleima F.J., Hofmann E., Gobets B., van Stokkum I.H., Grondelle R., Diederichs K., and van Amerongen H. Förster energy transfer in peridinin-chlorophyll-a-protein. Biophys. J. 78 1 (2000) 344-353
-
(2000)
Biophys. J.
, vol.78
, Issue.1
, pp. 344-353
-
-
Kleima, F.J.1
Hofmann, E.2
Gobets, B.3
van Stokkum, I.H.4
Grondelle, R.5
Diederichs, K.6
van Amerongen, H.7
-
41
-
-
0004133516
-
-
Gaussian, Inc., Pittsburgh PA
-
Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Zakrzewski V.G., Montgomery Jr. J.A., Stratmann R.E., Burant J.C., Dapprich S., Millam J.M., Daniels A.D., Kudin K.N., Strain M.C., Farkas O., Tomasi J., Barone V., Cossi M., Cammi R., Mennucci B., Pomelli C., Adamo C., Clifford S., Ochterski J., Petersson G.A., Ayala P.Y., Cui Q., Morokuma K., Malick D.K., Rabuck A.D., Raghavachari K., Foresman J.B., Cioslowski J., Ortiz J.V., Baboul A.G., Stefanov B.B., Liu G., Liashenko A., Piskorz P., Komaromi I., Gomperts R., Martin R.L., Fox D.J., Keith T., Al-Laham M.A., Peng C.Y., Nanayakkara A., Gonzalez C., Challacombe M., Gill P.M.W., Johnson B., Chen W., Wong M.W., Andres J.L., Gonzalez C., Head-Gordon M., Replogle E.S., and Pople J.A. Gaussian98, Revision A.7 (1998), Gaussian, Inc., Pittsburgh PA
-
(1998)
Gaussian98, Revision A.7
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery Jr., J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Baboul, A.G.36
Stefanov, B.B.37
Liu, G.38
Liashenko, A.39
Piskorz, P.40
Komaromi, I.41
Gomperts, R.42
Martin, R.L.43
Fox, D.J.44
Keith, T.45
Al-Laham, M.A.46
Peng, C.Y.47
Nanayakkara, A.48
Gonzalez, C.49
Challacombe, M.50
Gill, P.M.W.51
Johnson, B.52
Chen, W.53
Wong, M.W.54
Andres, J.L.55
Gonzalez, C.56
Head-Gordon, M.57
Replogle, E.S.58
Pople, J.A.59
more..
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
45
-
-
21644437700
-
Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets
-
Camacho C.J. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets. Proteins 60 (2005) 245-251
-
(2005)
Proteins
, vol.60
, pp. 245-251
-
-
Camacho, C.J.1
-
46
-
-
85025561435
-
Studies on chromophore coupling in isolated phycobiliproteins: II. Picosecond energy transfer kinetics and time resolved fluorescence spectra of C-phycocyanin from Synechococcus 6301 as function of the aggregation state
-
Holzwarth A.R., Wendler J., and Suter G.W. Studies on chromophore coupling in isolated phycobiliproteins: II. Picosecond energy transfer kinetics and time resolved fluorescence spectra of C-phycocyanin from Synechococcus 6301 as function of the aggregation state. Biophys. J. 51 (1987) 1-12
-
(1987)
Biophys. J.
, vol.51
, pp. 1-12
-
-
Holzwarth, A.R.1
Wendler, J.2
Suter, G.W.3
-
47
-
-
84989762024
-
Structure-function relationships and energy transfer in phycobiliprotein antennae
-
Holzwarth A.R. Structure-function relationships and energy transfer in phycobiliprotein antennae. Physiol. Plant. 83 (1991) 518-528
-
(1991)
Physiol. Plant.
, vol.83
, pp. 518-528
-
-
Holzwarth, A.R.1
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