메뉴 건너뛰기




Volumn 366, Issue 2, 2007, Pages 420-435

Temporal Regulation of Viral Transcription during Development of Thermus thermophilus Bacteriophage ϕYS40

Author keywords

bacteriophage; bioinformatic promoter search; leaderless mRNA; macroarray analysis; Thermus thermophilus

Indexed keywords

DNA DIRECTED RNA POLYMERASE; HOLOENZYME; INITIATION FACTOR 2; INITIATION FACTOR 3; MESSENGER RNA;

EID: 33846374007     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.11.050     Document Type: Article
Times cited : (29)

References (32)
  • 1
    • 0036346031 scopus 로고    scopus 로고
    • Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21
    • Ventura M., Foley S., Bruttin A., Chennoufi S.C., Canchaya C., and Brussow H. Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21. Virology 296 (2002) 62-76
    • (2002) Virology , vol.296 , pp. 62-76
    • Ventura, M.1    Foley, S.2    Bruttin, A.3    Chennoufi, S.C.4    Canchaya, C.5    Brussow, H.6
  • 3
    • 13444266330 scopus 로고    scopus 로고
    • The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10
    • Semenova E., Djordjevic M., Shraiman B., and Severinov K. The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10. Mol. Microbiol. 55 (2005) 764-777
    • (2005) Mol. Microbiol. , vol.55 , pp. 764-777
    • Semenova, E.1    Djordjevic, M.2    Shraiman, B.3    Severinov, K.4
  • 4
    • 24944442522 scopus 로고    scopus 로고
    • Global gene expression analysis of two Streptococcus thermophilus bacteriophages using DNA microarray
    • Duplessis M., Russell W.M., Romero D.A., and Moineau S. Global gene expression analysis of two Streptococcus thermophilus bacteriophages using DNA microarray. Virology 340 (2005) 192-208
    • (2005) Virology , vol.340 , pp. 192-208
    • Duplessis, M.1    Russell, W.M.2    Romero, D.A.3    Moineau, S.4
  • 5
    • 33749530225 scopus 로고    scopus 로고
    • Quantitative analysis of a virulent bacteriophage transcription strategy
    • Djordjevic M., Semenova E., Shraiman B., and Severinov K. Quantitative analysis of a virulent bacteriophage transcription strategy. Virology 354 (2006) 240-251
    • (2006) Virology , vol.354 , pp. 240-251
    • Djordjevic, M.1    Semenova, E.2    Shraiman, B.3    Severinov, K.4
  • 6
    • 0035694680 scopus 로고    scopus 로고
    • Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses
    • Peng X., Blum H., She Q., Mallok S., Brugger K., Garrett R.A., et al. Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses. Virology 291 (2001) 226-234
    • (2001) Virology , vol.291 , pp. 226-234
    • Peng, X.1    Blum, H.2    She, Q.3    Mallok, S.4    Brugger, K.5    Garrett, R.A.6
  • 8
    • 33645087247 scopus 로고    scopus 로고
    • Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life
    • Prangishvili D., Garrett R.A., and Koonin E.V. Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res. 117 (2006) 52-67
    • (2006) Virus Res. , vol.117 , pp. 52-67
    • Prangishvili, D.1    Garrett, R.A.2    Koonin, E.V.3
  • 9
    • 33751070265 scopus 로고    scopus 로고
    • Thermus thermophilus bacteriophage φ{symbol}YS40 genome and proteomic characterization of virions
    • Naryshkina T., Liu J., Florens L., Swanson S.K., Pavlov A.R., Pavlov N.V., et al. Thermus thermophilus bacteriophage φ{symbol}YS40 genome and proteomic characterization of virions. J. Mol. Biol. 364 (2006) 667-677
    • (2006) J. Mol. Biol. , vol.364 , pp. 667-677
    • Naryshkina, T.1    Liu, J.2    Florens, L.3    Swanson, S.K.4    Pavlov, A.R.5    Pavlov, N.V.6
  • 10
    • 0016793389 scopus 로고
    • Isolation and characterization of a bacteriophage infectious to an extreme thermophile, Thermus thermophilus HB8
    • Sakaki Y., and Oshima T. Isolation and characterization of a bacteriophage infectious to an extreme thermophile, Thermus thermophilus HB8. J. Virol. 15 (1975) 1449-1453
    • (1975) J. Virol. , vol.15 , pp. 1449-1453
    • Sakaki, Y.1    Oshima, T.2
  • 12
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider T.D., and Stephens R.M. Sequence logos: a new way to display consensus sequences. Nucl. Acids Res. 18 (1990) 6097-6100
    • (1990) Nucl. Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 16
    • 0004981260 scopus 로고
    • Defining a bacteriophage T4 late promoter: bacteriophage T4 gene 55 protein suffices for directing late promoter recognition
    • Kassavetis G.A., and Geiduschek E.P. Defining a bacteriophage T4 late promoter: bacteriophage T4 gene 55 protein suffices for directing late promoter recognition. Proc. Natl Acad. Sci. USA 81 (1984) 5101-5105
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 5101-5105
    • Kassavetis, G.A.1    Geiduschek, E.P.2
  • 17
    • 0036382847 scopus 로고    scopus 로고
    • The mechanism of transcriptional activation by the topologically DNA-linked sliding clamp of bacteriophage T4
    • Kolesky S.E., Ouhammouch M., and Geiduschek E.P. The mechanism of transcriptional activation by the topologically DNA-linked sliding clamp of bacteriophage T4. J. Mol. Biol. 321 (2002) 767-784
    • (2002) J. Mol. Biol. , vol.321 , pp. 767-784
    • Kolesky, S.E.1    Ouhammouch, M.2    Geiduschek, E.P.3
  • 18
  • 19
    • 0033605316 scopus 로고    scopus 로고
    • Effect of mutations in the "extended -10" motif of three Bacillus subtilis sigmaA-RNA polymerase-dependent promoters
    • Camacho A., and Salas M. Effect of mutations in the "extended -10" motif of three Bacillus subtilis sigmaA-RNA polymerase-dependent promoters. J. Mol. Biol. 286 (1999) 683-693
    • (1999) J. Mol. Biol. , vol.286 , pp. 683-693
    • Camacho, A.1    Salas, M.2
  • 20
    • 0034192263 scopus 로고    scopus 로고
    • DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study
    • Burr T., Mitchell J., Kolb A., Minchin S., and Busby S. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucl. Acids Res. 28 (2000) 1864-1870
    • (2000) Nucl. Acids Res. , vol.28 , pp. 1864-1870
    • Burr, T.1    Mitchell, J.2    Kolb, A.3    Minchin, S.4    Busby, S.5
  • 21
    • 33745485665 scopus 로고    scopus 로고
    • A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme
    • Feklistov A., Barinova N., Sevostyanova A., Heyduk E., Bass I., Vvedenskaya I., et al. A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme. Mol. Cell 23 (2006) 97-107
    • (2006) Mol. Cell , vol.23 , pp. 97-107
    • Feklistov, A.1    Barinova, N.2    Sevostyanova, A.3    Heyduk, E.4    Bass, I.5    Vvedenskaya, I.6
  • 24
    • 0036198887 scopus 로고    scopus 로고
    • Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control
    • Moll I., Grill S., Gualerzi C.O., and Blasi U. Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control. Mol. Microbiol. 43 (2002) 239-246
    • (2002) Mol. Microbiol. , vol.43 , pp. 239-246
    • Moll, I.1    Grill, S.2    Gualerzi, C.O.3    Blasi, U.4
  • 25
    • 0032896616 scopus 로고    scopus 로고
    • Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs
    • Tedin K., Moll I., Grill S., Resch A., Graschopf A., Gualerzi C.O., and Blasi U. Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs. Mol. Microbiol. 31 (1999) 67-77
    • (1999) Mol. Microbiol. , vol.31 , pp. 67-77
    • Tedin, K.1    Moll, I.2    Grill, S.3    Resch, A.4    Graschopf, A.5    Gualerzi, C.O.6    Blasi, U.7
  • 26
    • 0035957756 scopus 로고    scopus 로고
    • Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3
    • Grill S., Moll I., Hasenohrl D., Gualerzi C.O., and Blasi U. Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3. FEBS Letters 495 (2001) 167-171
    • (2001) FEBS Letters , vol.495 , pp. 167-171
    • Grill, S.1    Moll, I.2    Hasenohrl, D.3    Gualerzi, C.O.4    Blasi, U.5
  • 27
    • 0033565546 scopus 로고    scopus 로고
    • Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
    • Mironov A.A., Koonin E.V., Roytberg M.A., and Gelfand M.S. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. Nucl. Acids Res. 27 (1999) 2981-2989
    • (1999) Nucl. Acids Res. , vol.27 , pp. 2981-2989
    • Mironov, A.A.1    Koonin, E.V.2    Roytberg, M.A.3    Gelfand, M.S.4
  • 29
    • 0021151250 scopus 로고
    • Enzymatic and nucleotide sequence studies of a kanamycin-inactivating enzyme encoded by a plasmid from thermophilic bacilli in comparison with that encoded by plasmid pUB110
    • Matsumura M., Katakura Y., Imanaka T., and Aiba S. Enzymatic and nucleotide sequence studies of a kanamycin-inactivating enzyme encoded by a plasmid from thermophilic bacilli in comparison with that encoded by plasmid pUB110. J. Bacteriol. 160 (1984) 413-420
    • (1984) J. Bacteriol. , vol.160 , pp. 413-420
    • Matsumura, M.1    Katakura, Y.2    Imanaka, T.3    Aiba, S.4
  • 30
    • 0037288220 scopus 로고    scopus 로고
    • Development of a gene expression vector for Thermus thermophilus based on the promoter of the respiratory nitrate reductase
    • Moreno R., Zafra O., Cava F., and Berenguer J. Development of a gene expression vector for Thermus thermophilus based on the promoter of the respiratory nitrate reductase. Plasmid 49 (2003) 2-8
    • (2003) Plasmid , vol.49 , pp. 2-8
    • Moreno, R.1    Zafra, O.2    Cava, F.3    Berenguer, J.4
  • 31
    • 0022448655 scopus 로고
    • Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp
    • Koyama Y., Hoshino T., Tomizuka N., and Furukawa K. Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J. Bacteriol. 166 (1986) 338-340
    • (1986) J. Bacteriol. , vol.166 , pp. 338-340
    • Koyama, Y.1    Hoshino, T.2    Tomizuka, N.3    Furukawa, K.4
  • 32
    • 0024381696 scopus 로고
    • Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit
    • Hartmann R.K., and Erdmann V.A. Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit. J. Bacteriol. 171 (1989) 2933-2941
    • (1989) J. Bacteriol. , vol.171 , pp. 2933-2941
    • Hartmann, R.K.1    Erdmann, V.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.