Label-free detection of biomolecules on microarrays using surface-colloid interaction

Analytical Biochemistry

Volumn 361, Issue 2, 2007, Pages 244-252

  Sun, Ye ^a   Jacobson, K Bruce ^a   Golovlev, Val ^a  

^a Sci Tec Inc   (United States)

Author keywords

DNA and RNA detection; Labeling; Microarrays; Nanoparticles; Protein detection

Indexed keywords

BIOPOLYMERS; DNA; LABELING; MICROARRAYS; NANOPARTICLES; OLIGONUCLEOTIDES; PHASE INTERFACES; RNA; SOLS; TRANSCRIPTION;

CHARGED NANOPARTICLES; CHEMICAL COMPOSITIONS; DNA AND RNA DETECTION; GENE EXPRESSION ANALYSIS; LIQUID-SOLID INTERFACES; MICROARRAY SUBSTRATES; MICROARRAY TECHNOLOGIES; PROTEIN DETECTION;

BIOASSAY;

DNA; DYE; ION; NANOPARTICLE; OLIGONUCLEOTIDE; RNA;

ARTICLE; CHEMICAL BINDING; CHEMICAL COMPOSITION; CHEMICAL LABELING; COLLOID; DNA DETERMINATION; EXPERIMENTAL STUDY; GENE EXPRESSION; GENETIC ANALYSIS; LIQUID; MASS ACTION; MATHEMATICAL MODEL; MICROARRAY ANALYSIS; MOLECULAR INTERACTION; PREDICTION; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; REVERSE TRANSCRIPTION; RNA ANALYSIS; SOLID; SURFACE CHARGE; THEORETICAL STUDY;

EID: 33846349164     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2006.11.002     Document Type: Article

References (20)

1. Schema M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
2. Fodor S.P., Read J.L., Pirrung M.C., Stryer L., Lu A.T., and Solas D. Light-directed, spatially addressable parallel chemical synthesis. Science 251 (1991) 767-773
3. Brown P.O., and Botstein D. Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21 (1999) 33-37
4. Badiee A., Eiken H.G., Steen V.M., and Lovlie R. Evaluation of five different cDNA labeling methods for microarrays using spike controls. BMC Biotechnol. 3 (2003) 1-5
5. Epstein J.R., Biran I., and Walt D.R. Fluorescence-based nucleic acid detection and microarrays. Anal. Chim. Acta 21827 (2002) 1-34
6. Schulze A., and Downward J. Navigating gene expression using microarrays: a technology review. Nat. Cell Biol. 3 (2001) 190-195
7. Golovlev V., McCann M., Sun Y., and Fan W.-H. Microarray analysis without labeling. Am. Biotechnol. Lab. 22 (2004) 32-33
8. Sun Y., Fan W.H., MacCann M., and Golovlev V. Microarray gene expression analysis free of reverse transcription and dye labeling. Anal. Biochem. 345 (2005) 312-319
9. Fritzsche W., Csaki A., and Moller R. Nanoparticle-based optical detection of molecular interactions for DNA-chip technology. Proc. SPIE 4626 (2002) 17-22
10. Li Z., Jin R., Mirkin C.A., and Letsinger R.L. Multiple thiol-anchor capped DNA-gold nanoparticle conjugates. Nucleic Acids Res. 30 (2002) 1558-1562
11. Taylor S., Smith S., Windle B., and Guiseppi-Elie A. Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res. 31 (2003) 2-19
12. Behrens S.H., and Grier D.G. The charge of glass and silica surfaces. J. Chem. Phys. 115 (2001) 6716-6721
13. Morawetz H. Macromolecules in Solutions. 2nd ed. (1975), John Wiley, New York
14. Peterson A.W., Heaton R.J., and Georgiadis R.M. The effect of surface probe density on DNA hybridization. Nucleic Acids Res. 29 (2001) 5163-5168
15. Brewer S.H., Glomn W.R., Johnson M.C., Knag M.K., and Franzen S. Probing BSA binding to citrate-coated gold nano-particles and surfaces. Langmuir 21 (2005) 9303-9307
16. Biesheuvel P.M. Dynamic charge regulation model for the electrostatic forces between ionizable materials. Langmuir 18 (2002) 5566-5571
17. McBride M.B., and Baveye P. Particle interactions in colloidal systems. Soil Sci. Soc. Am. J. 66 (2002) 1207-1217
18. Behreus S.H., and Borkovec M. Electrostatic interaction of colloidal surfaces with variable charge. J. Phys. Chem. B 103 (1999) 2918-2928
19. Kokkoli E., and Zukoski C.F. Surface forces between hydrophilic self-assembled monolayers in aqueous electrolytes. Langmuir 16 (2000) 6029-6036
20. Graham T.W., and Fryhle B. Organic Chemistry (2004), John Wiley, New York