-
2
-
-
0347610773
-
Empirical Correlation between Protein Backbone Conformation and C-Alpha and C-Beta C-13 Nuclear-Magnetic-Resonance Chemical-Shifts
-
Spera, S.; Bax, A. Empirical Correlation between Protein Backbone Conformation and C-Alpha and C-Beta C-13 Nuclear-Magnetic-Resonance Chemical-Shifts. J. Am. Chem. Soc. 1991, 113 (14), 5490-5492.
-
(1991)
J. Am. Chem. Soc
, vol.113
, Issue.14
, pp. 5490-5492
-
-
Spera, S.1
Bax, A.2
-
3
-
-
0001741614
-
A comparison of density functional methods for the estimation of proton chemical shifts with chemical accuracy
-
Rablen, P. R.; Pearlman, S. A.; Finkbiner, J. A comparison of density functional methods for the estimation of proton chemical shifts with chemical accuracy. J. Phys. Chem. A 1999, 103 (36), 7357-7363.
-
(1999)
J. Phys. Chem. A
, vol.103
, Issue.36
, pp. 7357-7363
-
-
Rablen, P.R.1
Pearlman, S.A.2
Finkbiner, J.3
-
4
-
-
0000612778
-
Accurate prediction of proton chemical shifts. I. Substituted aromatic hydrocarbons
-
Wang, B.; Fleischer, U.; Hinton, J. F.; Pulay, P. Accurate prediction of proton chemical shifts. I. Substituted aromatic hydrocarbons. J. Comput. Chem. 2001, 22 (16), 1887-1895.
-
(2001)
J. Comput. Chem
, vol.22
, Issue.16
, pp. 1887-1895
-
-
Wang, B.1
Fleischer, U.2
Hinton, J.F.3
Pulay, P.4
-
5
-
-
0036489114
-
Accurate prediction of proton chemical shifts. II. Peptide analogues
-
Wang, B.; Hinton, J. F.; Pulay, P. Accurate prediction of proton chemical shifts. II. Peptide analogues. J. Comput. Chem. 2002, 23 (4), 492-497.
-
(2002)
J. Comput. Chem
, vol.23
, Issue.4
, pp. 492-497
-
-
Wang, B.1
Hinton, J.F.2
Pulay, P.3
-
6
-
-
0000865993
-
-
Osapay, K.; Case, D. A. A New Analysis of Proton Chemical-Shifts in Proteins. J. Am. Chem. Soc. 1991, 113 (25), 9436-9444.
-
Osapay, K.; Case, D. A. A New Analysis of Proton Chemical-Shifts in Proteins. J. Am. Chem. Soc. 1991, 113 (25), 9436-9444.
-
-
-
-
7
-
-
0028988451
-
Application of 1H NMR chemical shifts to measure the quality of protein structures
-
Williamson, M. P.; Kikuchi, J.; Asakura, T. Application of 1H NMR chemical shifts to measure the quality of protein structures. J. Mol. Biol. 1995, 247 (4), 541-546.
-
(1995)
J. Mol. Biol
, vol.247
, Issue.4
, pp. 541-546
-
-
Williamson, M.P.1
Kikuchi, J.2
Asakura, T.3
-
8
-
-
0031302286
-
Automated 1H and 13C chemical shift prediction using the BioMagResBank
-
Wishart, D. S.; Watson, M. S.; Boyko, R. F.; Sykes, B. D. Automated 1H and 13C chemical shift prediction using the BioMagResBank. J. Biomol. NMR 1997, 10 (4), 329-336.
-
(1997)
J. Biomol. NMR
, vol.10
, Issue.4
, pp. 329-336
-
-
Wishart, D.S.1
Watson, M.S.2
Boyko, R.F.3
Sykes, B.D.4
-
9
-
-
0035544152
-
Automated prediction of 15N, 13Calpha, 13Cbeta and 13C′ chemical shifts in proteins using a density functional database
-
Xu, X. P.; Case, D. A. Automated prediction of 15N, 13Calpha, 13Cbeta and 13C′ chemical shifts in proteins using a density functional database. J. Biomol. NMR 2001, 21 (4), 321-333.
-
(2001)
J. Biomol. NMR
, vol.21
, Issue.4
, pp. 321-333
-
-
Xu, X.P.1
Case, D.A.2
-
10
-
-
0028127028
-
Solution structure of carbonmonoxy myoglobin determined from nuclear magnetic resonance distance and chemical shift constraints
-
Osapay, K.; Theriault, Y.; Wright, P. E.; Case, D. A. Solution structure of carbonmonoxy myoglobin determined from nuclear magnetic resonance distance and chemical shift constraints. J. Mol. Biol. 1994, 244 (2), 183-197.
-
(1994)
J. Mol. Biol
, vol.244
, Issue.2
, pp. 183-197
-
-
Osapay, K.1
Theriault, Y.2
Wright, P.E.3
Case, D.A.4
-
11
-
-
3142696397
-
Fast semiempirical calculations for nuclear magnetic resonance chemical shifts: A divide-and-conquer approach
-
Wang, B.; Brothers, E. N.; Van Der Vaart, A.; Merz, K. M. Fast semiempirical calculations for nuclear magnetic resonance chemical shifts: A divide-and-conquer approach. J. Chem. Phys. 2004, 120 (24), 11392-11400.
-
(2004)
J. Chem. Phys
, vol.120
, Issue.24
, pp. 11392-11400
-
-
Wang, B.1
Brothers, E.N.2
Van Der Vaart, A.3
Merz, K.M.4
-
12
-
-
0043144732
-
-
Yang, W. T.; Lee, T. S. A Density-Matrix Divide-and-Conquer Approach for Electronic-Structure Calculations of Large Molecules. J. Chem. Phys. 1995, 103 (13), 5674-5678.
-
Yang, W. T.; Lee, T. S. A Density-Matrix Divide-and-Conquer Approach for Electronic-Structure Calculations of Large Molecules. J. Chem. Phys. 1995, 103 (13), 5674-5678.
-
-
-
-
13
-
-
4143104515
-
Semiempirical molecular orbital calculations with linear system size scaling
-
Dixon, S. L.; Merz, K. M. Semiempirical molecular orbital calculations with linear system size scaling. J. Chem. Phys. 1996, 104 (17), 6643-6649.
-
(1996)
J. Chem. Phys
, vol.104
, Issue.17
, pp. 6643-6649
-
-
Dixon, S.L.1
Merz, K.M.2
-
14
-
-
0346506503
-
Fast, accurate semiempirical molecular orbital calculations for macromolecules
-
Dixon, S. L.; Merz, K. M. Fast, accurate semiempirical molecular orbital calculations for macromolecules. J. Chem. Phys. 1997, 107 (3), 879-893.
-
(1997)
J. Chem. Phys
, vol.107
, Issue.3
, pp. 879-893
-
-
Dixon, S.L.1
Merz, K.M.2
-
15
-
-
24444468650
-
Ground State of Molecules. 38. The MNDO Method. Approximations and Parameters
-
Dewar, M. J. S.; Thiel, W. Ground State of Molecules. 38. The MNDO Method. Approximations and Parameters. J. Am. Chem. Soc. 1977, 99 (15), 4899-4907.
-
(1977)
J. Am. Chem. Soc
, vol.99
, Issue.15
, pp. 4899-4907
-
-
Dewar, M.J.S.1
Thiel, W.2
-
16
-
-
0000594991
-
NMR chemical shifts in MNDO approximation: Parameters and results for H, C, N, and O
-
Patchkovskii, S.; Thiel, W. NMR chemical shifts in MNDO approximation: Parameters and results for H, C, N, and O. J. Comput. Chem. 1999, 20 (12), 1220-1245.
-
(1999)
J. Comput. Chem
, vol.20
, Issue.12
, pp. 1220-1245
-
-
Patchkovskii, S.1
Thiel, W.2
-
17
-
-
4544344685
-
Pose scoring by NMR
-
Wang, B.; Raha, K.; Merz, K. M., Jr. Pose scoring by NMR. J. Am. Chem. Soc. 2004, 126 (37), 11430-11431.
-
(2004)
J. Am. Chem. Soc
, vol.126
, Issue.37
, pp. 11430-11431
-
-
Wang, B.1
Raha, K.2
Merz Jr., K.M.3
-
18
-
-
17644384789
-
Validation of the binding site structure of the cellular retinol-binding protein (CRBP) by ligand NMR chemical shift perturbations
-
Wang, B.; Merz, K. M., Jr. Validation of the binding site structure of the cellular retinol-binding protein (CRBP) by ligand NMR chemical shift perturbations. J. Am. Chem. Soc. 2005, 127 (15), 5310-5311.
-
(2005)
J. Am. Chem. Soc
, vol.127
, Issue.15
, pp. 5310-5311
-
-
Wang, B.1
Merz Jr., K.M.2
-
19
-
-
0033748649
-
Molecular properties from combined QM/MM methods. 2. Chemical shifts in large molecules
-
Cui, Q.; Karplus, M. Molecular properties from combined QM/MM methods. 2. Chemical shifts in large molecules. J. Phys. Chem. B 2000, 104 (15), 3721-3743.
-
(2000)
J. Phys. Chem. B
, vol.104
, Issue.15
, pp. 3721-3743
-
-
Cui, Q.1
Karplus, M.2
-
20
-
-
2942594077
-
Quantum capping potentials with point charges: A simple QM/MM approach for the calculation of large-molecule NMR shielding tensors
-
Moon, S.; Christiansen, P. A.; DiLabio, G. A. Quantum capping potentials with point charges: A simple QM/MM approach for the calculation of large-molecule NMR shielding tensors. J. Chem. Phys. 2004, 120 (19), 9080-9086.
-
(2004)
J. Chem. Phys
, vol.120
, Issue.19
, pp. 9080-9086
-
-
Moon, S.1
Christiansen, P.A.2
DiLabio, G.A.3
-
21
-
-
1542366469
-
Nuclear magnetic resonance chemical shifts from hybrid DFT QM/MM calculations
-
Sebastiani, D.; Rothlisberger, U. Nuclear magnetic resonance chemical shifts from hybrid DFT QM/MM calculations. J. Phys. Chem. B 2004, 108 (9), 2807-2815.
-
(2004)
J. Phys. Chem. B
, vol.108
, Issue.9
, pp. 2807-2815
-
-
Sebastiani, D.1
Rothlisberger, U.2
-
22
-
-
17044450913
-
-
Weber, V.; Niklasson, A. M. N.; Challacombe, M. Phys. Rev. Lett. 2004, 92 (19), 193002.
-
(2004)
Phys. Rev. Lett
, vol.92
, Issue.19
, pp. 193002
-
-
Weber, V.1
Niklasson, A.M.N.2
Challacombe, M.3
-
23
-
-
0017100947
-
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
-
Warshel, A.; Levitt, M. Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme. J. Mol. Biol. 1976, 103, 227-249.
-
(1976)
J. Mol. Biol
, vol.103
, pp. 227-249
-
-
Warshel, A.1
Levitt, M.2
-
24
-
-
0842341771
-
A New General Purpose Quantum Mechanical Molecular Model
-
13
-
Dewar, M. J. S.; Zoebisch, E. G.; Healy, E. F.; Stewart, J. J. P. AMI: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 107 (13), 3902-3909.
-
(1985)
J. Am. Chem. Soc
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.4
AMI, P.5
-
25
-
-
84988129057
-
Optimization of Parameters for Semiempirical Methods I. Method
-
Stewart, J. J. P. Optimization of Parameters for Semiempirical Methods I. Method. J. Comput. Chem. 1989, 10 (2), 209-220.
-
(1989)
J. Comput. Chem
, vol.10
, Issue.2
, pp. 209-220
-
-
Stewart, J.J.P.1
-
26
-
-
30344440627
-
-
8.0;
-
Case, D. A.; Darden, T. A.; Cheatham, I., T. E.; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Merz, K. M.; Wang, B.; Pearlman, D. A.; Crowley, M.; Brozell, S.; Tsui, V.; Gohlke, H.; Mongan, J.; Hornak, V.; Cui, G.; Beroza, P.; Schafmeister, C.; Caldwell, J. W.; Ross, W. S.; Kollman, P. A. AMBER, 8.0; 2004.
-
(2004)
AMBER
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, I.T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Wang, B.9
Pearlman, D.A.10
Crowley, M.11
Brozell, S.12
Tsui, V.13
Gohlke, H.14
Mongan, J.15
Hornak, V.16
Cui, G.17
Beroza, P.18
Schafmeister, C.19
Caldwell, J.W.20
Ross, W.S.21
Kollman, P.A.22
more..
-
28
-
-
0010297384
-
Partial energy and chemical shielding surfaces in the water (H2O)2 and hydrogen fluoride (HF)2 van der Waals complexes
-
Chesnut, D. B.; Rusiloski, B. E. Partial energy and chemical shielding surfaces in the water (H2O)2 and hydrogen fluoride (HF)2 van der Waals complexes. J. Phys. Chem. 1993, 97, 2839-2845.
-
(1993)
J. Phys. Chem
, vol.97
, pp. 2839-2845
-
-
Chesnut, D.B.1
Rusiloski, B.E.2
-
29
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
30
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr.; Ferguson, D. C.; Spellmeyer, T.; Fox, J. W.; Caldwell, J. W.; Kollman, P. A. A Second Generation Force Field for the Simulation of Protein, Nucleic Acids, and Organic Molecules. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr.; Ferguson, D. C.; Spellmeyer, T.; Fox, J. W.; Caldwell, J. W.; Kollman, P. A. A Second Generation Force Field for the Simulation of Protein, Nucleic Acids, and Organic Molecules. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
-
-
-
31
-
-
25844481468
-
Theory of Nuclear Magnetic Shielding in Molecules. I. Long-Range Dipolar Shielding of Protons
-
McConnell, H. M. Theory of Nuclear Magnetic Shielding in Molecules. I. Long-Range Dipolar Shielding of Protons. J. Chem. Phys. 1957, 27, 226-229.
-
(1957)
J. Chem. Phys
, vol.27
, pp. 226-229
-
-
McConnell, H.M.1
-
32
-
-
0029836953
-
Discovering high-affinity ligands for proteins: SAR by NMR
-
Shuker, S. B.; Hajduk, P. J.; Meadows, R. P.; Fesik, S. W. Discovering high-affinity ligands for proteins: SAR by NMR. Science 1996, 274, 1531-1534.
-
(1996)
Science
, vol.274
, pp. 1531-1534
-
-
Shuker, S.B.1
Hajduk, P.J.2
Meadows, R.P.3
Fesik, S.W.4
|