The influence of ribosome modulation factor on the survival of stationary-phase Escherichia coli during acid stress

Microbiology

Volumn 153, Issue 1, 2007, Pages 247-253

  El Sharoud, Walid M ^a,b   Niven, Gordon W ^a  

^a UNIVERSITY OF READING   (United Kingdom)

^b Mansoura University   (Egypt)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; RIBOSOME MODULATION FACTOR PROTEIN; RIBOSOME PROTEIN; UNCLASSIFIED DRUG;

ALKALINITY; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BACTERIUM CULTURE; BACTERIUM MUTANT; CELL CYCLE S PHASE; ENVIRONMENTAL STRESS; ENZYME ACTIVITY; ENZYME ASSAY; ESCHERICHIA COLI; GENE EXPRESSION; GENE EXPRESSION REGULATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN FUNCTION; RNA GENE;

ACIDS; CULTURE MEDIA; ELECTROPHORESIS, AGAR GEL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; RIBOSOMAL PROTEINS; RNA, RIBOSOMAL;

ESCHERICHIA COLI;

EID: 33846318176     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2006/001552-0     Document Type: Article

References (20)

1. 2+ uptake by OmpC (cation-selective porin) deficiency in ribosome modulation factor-deficient mutant. Biochem Biophys Res Commun 251, 482-487.
2. El-Sharoud, W. M. & Niven, G. W. (2005). The activity of ribosome modulation factor during growth of Escherichia coli under acidic conditions. Arch Microbiol 184, 18-24.
3. Foster, J. W. (1999). When protons attack: microbial strategies of acid adaptation. Curr Opin Microbiol 2, 170-174.
4. Foster, J. W. (2000). Microbial response to acid stress. In Bacterial Stress Responses, pp. 99-115. Edited by G. Storz & R. Hengge-Aronis. Washington, DC: American Society for Microbiology.
5. Fukuchi, J., Kashiwagi, K., Yamagishi, M., Ishihama, A. & Igarashi, K. (1995). Decrease in cell viability due to the accumulation of spermidine in spermidine acetyltransferase-deficient mutant of Escherichia coli. J Biol Chem 270, 18831-18835.
6. Garay-Arroyo, A., Colmenero-Flores, J. M, Garciarrubio, A. & Covarrubias, A. A. (2000). Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J Biol Chem 25, 5668-5674.
7. Genthner, F. J. & Martin, S. E. (1990). Ribosome assembly in Salmonella Typhimurium 7136 during recovery from heat shock. Food Microbiol 7, 53-67.
8. Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., Han, C. G., Ohtsubo, E., Nakayama, K. & other authors (2001). Complete genome sequence of enterohemorrhagic Escherichia coli O157: H7 and genomic comparison with a laboratory strain K-12. DNA Res 8, 11-22.
9. Ishihama, A. (1999). Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival. Genes Cells 4, 135-143.
10. Izutsu, K., Wade, A. & Wada, C. (2001). Expression of ribosome modulation factor (RMF) in Escherichia coli requires ppGpp. Genes Cells 6, 665-676.
11. Kornblum, J. S., Projan, S. J., Moghazeh, S. L. & Novick R. P. (1988). A rapid method to quantitate non-labeled RNA species in bacterial cells. Gene 63, 75-85.
12. Maki, Y., Yoshida, H. & Wada, A. (2000). Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli. Genes Cells 5, 965-974.
13. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, NY: Cold Spring Harbor.
14. Niven, G. W. (2004). Ribosome modulation factor protects Escherichia coli during heat stress, but this may not be dependent on ribosome dimerisation. Arch Microbiol 162, 60-66.
15. Rowbury, R. J. (1997). Regulatory components, including integration host factor, CysB and H-NS, that influence pH responses in Escherichia coli. Lett Appl Microbiol 24, 319-328.
16. Wada, A. (1998). Growth phase coupled modulation of Escherichia coli ribosomes. Genes Cells 3, 203-208.
17. Wada, A., Yamazaki, Y., Fujita, N. & Ishihama, A. (1990). Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells. Proc Natl Acad Sci U S A 87, 2657-2661.
18. Wada, A., Mikkola, R., Kurland, C. G. & Ishihama, A. (2000). Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli. J Bacteriol 182, 2893-2899.
19. Yamagishi, M., Matsushima, H., Wada, A., Sakagami, M., Fujita, N. & Ishihama, A. (1993). Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor - growth phase-dependent and growth rate-dependent control. EMBO 112, 625-630.
20. Yoshida, H., Yamamoto, H., Uchiumi, T. & Wada, A. (2004). RMF inactivates ribosomes by covering the peptidyl transferase centre and entrance of peptide exit tunnel. Genes Cells 9, 271-278.