Bio-workflows with BizTalk: Using a commercial workflow engine for eScience

Proceedings - First International Conference on e-Science and Grid Computing, e-Science 2005

Volumn 2005, Issue , 2005, Pages 116-123

  Rygg, Asbjørn ^a   Mann, Scott ^a   Roe, Paul ^a   Wong, On ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; INFORMATION SCIENCE; NATURAL SCIENCES COMPUTING; USER INTERFACES; WORLD WIDE WEB;

BIOINFORMATICS; BUSINESS WORKFLOW ENGINE; ESCIENCE; WORKFLOW;

COMPUTER SCIENCE;

EID: 33846313639     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/E-SCIENCE.2005.22     Document Type: Conference Paper

References (19)

1. A. Slominski and G. von Laszewski, Scientific workflow survey http://www.extreme.indiana.edu/swf-survev/
2. Fraunhofer FIRST, Grid Workflow Forum http://www.gridworkflow.org/ snips/gridworkflow/space/start
3. EPSRC, myGrid, http://www.mygrid.org.uk/
4. Open Bioinformatics Foundation, BioPipe, http://biopipe.org/
5. University of California, Kepler http://kepler-project.org/
6. Microsoft, BizTalk http://www.microsoft.com/biztalk/
7. BioMOBY http://biomoby.org/
8. J. Yu and R. Buyya, A Taxonomy of Scientific Workflow Systems for Grid Computing, Special Issue on Scientific Workflows, SIGMOD Record, ACM Press, Volume 34, Number 3, Sept. 2005. (to appear)
9. B. Ludäscher, I. Altintas, C. Berkley, D. Higgins, E. Jaeger-Frank, M. Jones, E. Lee, J. Tao, Y. Zhao, Scientific Workflow Management and the Kepler System, Concurrency and Computation: Practice & Experience, Special Issue on Scientific Workflows, 2005 (to appear)
10. S. Mann, P. Roe, Bio-Sequence Manager: A Tool Integrating and Caching Biological Databases through Web Services, Technical Report, Faculty of IT, Queensland University of Technology, Brisbane, Australia
11. OASIS, BPEL, http://www.oasisopen.org/committees/wsbpel/
12. Y. E. Ioannidis et al. Zoo: A Desktop Experiment Management Environment, 1997 ACM SIGMOD International Conference on Management of Data, Tucson, Arizona, May 13-15, pp. 580-583, 1997.
13. J. Wainer et al. Scientific Workflow Systems, NSF Workshop on Workflow and Process Automation, State Botanical Garden, Georgia, May 8-10. 1996
14. T. Oinn, Taverna, http://taverna.sourceforge.net/
15. UC Berkeley, Ptolemy II, http://ptolemy.eecs.berkeley.edu/ptolemyII/
16. S. Hoon, et al. BioPipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis, Genome Research. 2003
17. The Condor Team, Condor - High Throughput Computing, University of Wisconsin-Madison, http://www.cs.wisc.edu/condor/
18. J. Annis et al. Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey, 2002 ACM/IEEE conference on Supercomputing IEEE Computer Society Press, Baltimore, Maryland, pp. 1-14. 2002.
19. J. Cao et al. GridFlow: Workflow Management for Grid Computing, 3rd International Symposium on Cluster Computing and the Grid, Tokyo, Japan. IEEE Press 2003.