Erratum to the article: Periodic oscillations of the genomic nucleotide sequences disclose major differences in the way of constructing homologous proteins from different procaryotic species [C. R. Biologies 330 (2007) 13-32] (DOI:10.1016/j.crvi.2006.07.002);Periodic oscillations of the genomic nucleotide sequences disclose major differences in the way of constructing homologous proteins from different procaryotic species

Comptes Rendus - Biologies

Volumn 330, Issue 1, 2007, Pages 13-32

  Slonimski, Piotr P ^a  

^a CENTRE DE GÉNÉTIQUE MOLÉCULAIRE   (France)

Author keywords

Bigrams; Bioinformatics; Evolution; Genomes; Nucleotide sequences; Periodic oscillations; Protein structure

Indexed keywords

ALANINE; BACTERIAL PROTEIN; CYSTEINE; GLYCINE; THREONINE;

GENOME; OSCILLATION; PERIODICITY; PROTEIN;

ALPHA HELIX; AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; CONTROLLED STUDY; GENOME SIZE; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OSCILLATION; PROTEIN FUNCTION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; STATISTICAL ANALYSIS; X RAY DIFFRACTION;

PROKARYOTA;

EID: 33846279418     PISSN: 16310691     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crvi.2006.12.004     Document Type: Erratum

References (9)

1. Damashek M. Gauging similarity via n-grams: text sorting, categorizing and retrieval in any language. Science 267 (1995) 843-848
2. Vinga S., and Almeida J.S. Alignment-free sequence comparison. Bioinformatics 19 (2003) 513-523
3. J. Radomski, P.P. Slonimski, Primary sequence of proteins from 52 complete genomes displays a singular periodicity as revealed by an alignment-free n-gram analysis, Prog. Biophys. Mol. Biol., submitted for publication
4. 22Note that the supplementary material (available with the online version of this article) also contains a copy of Ref. [4] (4 p., Figs. A30-A33).
5. Krzywicki A., and Slonimski P.P. Formal analysis of protein sequences. I. Specific long-range constraints in pair associations of amino acids. J. Theor. Biol. 17 (1967) 136-158
6. Ouzounis C.A., and Valencia A. Early bioinformatics: the birth of a discipline - a personal view. Bioinformatics 19 (2003) 2176-2190
7. Radomski J.P., and Slonimski P.P. Genomic style of proteins: concepts, methods and analyses of ribosomal proteins from 16 microbial species. FEMS Microbiol. Rev. 25 (2001) 425-435
8. Peterson J.D., Umayam L.A., Dickinson T.M., Hickey E.K., and White O. The comprehensive microbial resource. Nucleic Acids Res. 29 (2001) 123-125
9. Goffeau A., Slonimski P.P., Nakai K., and Risler J.-L. How many genes code for membrane-spanning proteins?. Yeast 9 (1993) 691-702