Wide gene expression profiling of ischemia-reperfusion injury in human liver transplantation

Liver Transplantation

Volumn 13, Issue 1, 2007, Pages 99-113

  Confi, Anna ^a   Scala, Simona ^b   D'Agostino, Paola ^b   Alimenti, Elena ^b   Morelli, Daniele ^b   Andria, Barbara ^b   Tammaro, Angela ^b   Attanasio, Chiara ^b   Della Ragione, Floriana ^c   Scuderi, Vincenzo ^b   Fabbrini, Floriana ^a   D'Esposito, Maurizio ^c   Di Florio, Ernesto ^b   Nitsch, Lucio ^a   Calise, Fulvio ^b   Faiella, Antonio ^b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b CARDARELLI HOSPITAL   (Italy)

^c INSTITUTE OF GENETICS AND BIOPHYSICS ADRIANO BUZZATI TRAVERSO   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CELL ADHESION MOLECULE; HEAT SHOCK PROTEIN; INTEGRIN;

ADULT; APOPTOSIS; ARTICLE; CADAVER DONOR; CLINICAL ARTICLE; COLD ISCHEMIA; CONTROLLED STUDY; DNA MICROARRAY; FEMALE; GENE CONTROL; GENE EXPRESSION PROFILING; GENETIC ANALYSIS; HUMAN; HUMAN TISSUE; INFLAMMATION; LIVER BIOPSY; LIVER CIRRHOSIS; LIVER INJURY; LIVER ISCHEMIA; LIVER TRANSPLANTATION; MALE; NUCLEOTIDE SEQUENCE; PATHOPHYSIOLOGY; PRIORITY JOURNAL; REPERFUSION INJURY; UPREGULATION;

ADULT; AGED; AGED, 80 AND OVER; APOPTOSIS; BIOPSY; DOWN-REGULATION; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HUMANS; INFLAMMATION; ISCHEMIA; LIVER; LIVER DISEASES; LIVER TRANSPLANTATION; MALE; MIDDLE AGED; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPERFUSION INJURY; UP-REGULATION;

EID: 33846243808     PISSN: 15276465     EISSN: 15276473     Source Type: Journal    
DOI: 10.1002/lt.20960     Document Type: Article

References (31)

1. Fondevila C, Busuttil RW, Kupiec-Weglinski JW. Hepatic ischemia/ reperfusion injury - a fresh look. Exp Mol Pathol 2003;74:86-93.
2. Busuttil RW, Tanaka K. The utility of marginal donors in liver transplantation. Liver Transpl 2003;9:651-663.
3. Jaeschke H, Bautista AP, Spolarics Z, Spitzer JJ. Super-oxide generation by Kupffer cells and priming of neutrophils during reperfusion after hepatic ischemia. Free Radic Res Commun 1991;15:277-284.
4. Jaeschke H. Farhood A. Neutrophil and Kupffer cell-induced oxidant stress and ischemia-reperfusion injury in rat liver. Am J Physiol 1991;355-362.
5. Rymsa B, Wang JF, de Groot H. O2-. release by activated Kupffer cells upon hypoxia-reoxygenation. Am J Physiol 1991;261:602-607.
6. Lemasters JJ. Hypoxic, ischemic, and reperfusion injury to liver. In: Arias IM, Boyer JM, Chisani FV, Fausto N, Schachter D. Shafritz DA, eds. The Liver: Biology and Pathobiology. 4th edition. Philadelphia. PA: Lippincott Williams & Williams; 2001:257-279.
7. Fan C, Zwacka RM, Engelhardt JF. Therapeutic approaches for ischemia/ reperfusion injury in the liver. J Mol Med 1999;77:577-592. Review.
8. Jaeschke H. Reactive oxygen and mechanisms of inflammatory liver injury. J Gastroenterol Hepatol 2000;15:718-724. Review.
9. Jaeschke H. Molecular mechanisms of hepatic ischemia-reperfusion injury and preconditioning. Am J Physiol Gastrointest Liver Physiol 2003;284:15-26. Review.
10. Borozan I, Chen L. Sun J, Tannis LL, Guindi M. Rotstein OD, et al. Gene expression profiling of acute liver stress during living donor liver transplantation. Am. J Transplant 2006;6: 806-824.
11. Nardo B, Beltempo P, Bertelli R, Montalti R. Vivarelli M, Urbani L, et al. Comparison of Celsior and University of Wisconsin solutions in cold preservation of liver from octogenarian donors. Transplant Proc 2004:36:523-524.
12. Sicuderi V, Ceriello A, Maida P, Aragiusto G, Arenga G, Carfora T, et al. The marginal donor: a single center experience in orthotopic liver transplantation. Transplant Proc 2006:38:1069-1073.
13. http://www.affymetrix.com/support/technical/manual/ expression_manual.affix
14. http://www.affymetrix.com/support/downloads/manuals/ expression_s2_manual.pdf.
15. Jornsten R, Yu B. Simultaneous gene clustering and subset selection for sample classification via MDL. Bioinformatics 2003:19:1100-1109.
16. Ashburner M. Ball CA, Blake JA, Berstein D, Butler H, Chem, JM, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000; 25:25-29.
17. http://genereg.ornl.gov/gotm
18. Boyle EI, Weng S, Gollub J, Jin H, Berstein D, Cherry JM, Sherlock G. GO: TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004;20:3710-33715.
19. Zhang B. Schmoyer D. Kirov S, Snoddy J. GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies. BMC Bioinformatics 2004;5:16.
20. frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi
21. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002;18;3:34.
22. Page GP, Edwards JW, Gadbury GL, Yelisetti P, Wang J, Trivedi P. Allison DB. The PowerAtlas: a power and sample size atlas for microarray experimental design and research. BMC Bioinformatics 2006;7:84.
23. Yamane M, Liu M. Kaneda H, Uhlig S, Waddell TK, Keshavjee SC. Reperfusion-induced gene expression profiles in rat lung transplantation. Am J Transplant 2005;5:2160-2169.
24. Colletti LM, Kunkel SL, Walz A, Burdick MD, Kunkel RG, Wilke CA, et al. The role of cytokine networks in the local liver injury following hepatic ischemia/reperfusion in the rat. Hepatology 1996;23:506-514.
25. Fallsehr C, Zapletal C, Kremer M, Demir R, von Knebel Doeberitz M. et al. Identification of differentially expressed genes after partial rat liver ischemia/reperfusion by suppression subtractive hybridization. World J Gastroenterol 2005;11:1303-1316.
26. Sakai T, Takaya S, Fukuda A, Harada O, Kobayashi M. Evaluation of warm ischemia-reperfusion injury using heat shock protein in the rat liver. Transpl Int 2003;16: 88-99
27. Uchinami H, Yamamoto Y, Kume M, Yonezawa K, Ishikawa Y. Taura K. et al. Effect of heat shock preconditioning on NF-kappaB/I-kappaB pathway during I/R injury of the rat liver. Am J Physiol Gastrointest Liver Physiol 2002; 282;962-971.
28. Bauer M, Bauer I. Heme oxygenase-1: redox regulation and role in the hepatic response to oxidative stress. Antioxid Redox Signal 2002;4:749-758.
29. Yin DP. Sankary HN. Chong AS, Ma LL, Shen J, Foster P, et al. Protective effect of ischemic preconditioning on liver preservation-reperfusion injury in rats. Transplantation 1998:66:152-157.
30. Chosay JG, Essani NA, Dunn CJ, Jaeschke H. Neutrophil margination and extravasation in smusoids and venules of liver during endotoxin-induced injury. Am J Physiol 1997;272:1195-1200.
31. White P, Brestelli JE, Kaestner KH, Greenbaum LE. Identification of transcriptional networks during liver regeneration. J Biol Chem 2005;280:3715-3722.