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Volumn 35, Issue SUPPL. 1, 2007, Pages

MiST: A microbial signal transduction database

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; MICROBIAL METABOLISM; MICROBIAL SIGNAL TRANSDUCTION DATABASE; NONHUMAN; PRIORITY JOURNAL; PROCESS DESIGN; PROCESS DEVELOPMENT; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN DOMAIN; SIGNAL TRANSDUCTION; SPECIES COMPARISON;

EID: 33846090559     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl932     Document Type: Article
Times cited : (100)

References (38)
  • 1
    • 0027056677 scopus 로고
    • Communication modules in bacterial signaling proteins
    • Parkinson,J.S. and Kofoid,E.C. (1992) Communication modules in bacterial signaling proteins. Annu. Rev. Genet., 26, 71-112.
    • (1992) Annu. Rev. Genet. , vol.26 , pp. 71-112
    • Parkinson, J.S.1    Kofoid, E.C.2
  • 4
    • 12944325784 scopus 로고    scopus 로고
    • One-component systems dominate signal transduction in prokaryotes
    • Ulrich,L.E., Koonin,E.V. and Zhulin,I.B. (2005) One-component systems dominate signal transduction in prokaryotes. Trends Microbiol., 13, 52-56.
    • (2005) Trends Microbiol. , vol.13 , pp. 52-56
    • Ulrich, L.E.1    Koonin, E.V.2    Zhulin, I.B.3
  • 6
    • 0027236999 scopus 로고
    • Transcriptional regulation by cAMP and its receptor protein
    • Kolb,A., Busby,S., Buc,H., Garges,S. and Adhya,S. (1993) Transcriptional regulation by cAMP and its receptor protein. Annu. Rev. Biochem., 62, 749-795.
    • (1993) Annu. Rev. Biochem. , vol.62 , pp. 749-795
    • Kolb, A.1    Busby, S.2    Buc, H.3    Garges, S.4    Adhya, S.5
  • 7
    • 0028208257 scopus 로고
    • RocR, a novel regulatory protein controlling arginine utilization in Bacillus subtilis, belongs to the NtrC/NifA family of transcriptional activators
    • Calogero,S., Gardan,R., Glaser,P., Schweizer,J., Rapoport,G. and Debarbouille,M. (1994) RocR, a novel regulatory protein controlling arginine utilization in Bacillus subtilis, belongs to the NtrC/NifA family of transcriptional activators. J. Bacteriol., 176, 1234-1241.
    • (1994) J. Bacteriol. , vol.176 , pp. 1234-1241
    • Calogero, S.1    Gardan, R.2    Glaser, P.3    Schweizer, J.4    Rapoport, G.5    Debarbouille, M.6
  • 9
    • 32044441204 scopus 로고    scopus 로고
    • Individual metal ligands play distinct functional roles in the zinc sensor Staphylococcus aureus CzrA
    • Pennella,M.A., Arunkumar,A.I. and Giedroc,D.P. (2006) Individual metal ligands play distinct functional roles in the zinc sensor Staphylococcus aureus CzrA. J. Mol. Biol., 356, 1124-1136.
    • (2006) J. Mol. Biol. , vol.356 , pp. 1124-1136
    • Pennella, M.A.1    Arunkumar, A.I.2    Giedroc, D.P.3
  • 10
    • 0242582330 scopus 로고    scopus 로고
    • A cadmium-lead-sensing ArsR-SmtB repressor with novel sensory sites. Complementary metal discrimination by NmtR and CmtR in a common cytosol
    • Cavet,J.S., Graham,A.I., Meng,W. and Robinson,N.J. (2003) A cadmium-lead-sensing ArsR-SmtB repressor with novel sensory sites. Complementary metal discrimination by NmtR and CmtR in a common cytosol. J. Biol. Chem., 278, 44560-44566.
    • (2003) J. Biol. Chem. , vol.278 , pp. 44560-44566
    • Cavet, J.S.1    Graham, A.I.2    Meng, W.3    Robinson, N.J.4
  • 11
    • 0031262875 scopus 로고    scopus 로고
    • PAS: A multifunctional domain family comes to light
    • Ponting,C.P. and Aravind,L. (1997) PAS: A multifunctional domain family comes to light. Curr. Biol., 7, R674-R677.
    • (1997) Curr. Biol. , vol.7
    • Ponting, C.P.1    Aravind, L.2
  • 12
    • 0032990441 scopus 로고    scopus 로고
    • PAS domains: Internal sensors of oxygen, redox potential, and light
    • Taylor,B.L. and Zhulin,I.B. (1999) PAS domains: Internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev., 63, 479-506.
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 479-506
    • Taylor, B.L.1    Zhulin, I.B.2
  • 13
    • 0030712081 scopus 로고    scopus 로고
    • The GAF domain: An evolutionary link between diverse phototransducing proteins
    • Aravind,L. and Ponting,C.P. (1997) The GAF domain: An evolutionary link between diverse phototransducing proteins. Trends Biochem. Sci., 22, 458-459.
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 458-459
    • Aravind, L.1    Ponting, C.P.2
  • 14
    • 0034326854 scopus 로고    scopus 로고
    • Cache - A signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors
    • Anantharaman,V. and Aravind,L. (2000) Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors. Trends Biochem. Sci., 25, 535-537.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 535-537
    • Anantharaman, V.1    Aravind, L.2
  • 15
    • 0035478909 scopus 로고    scopus 로고
    • The CHASE domain: A predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors
    • Anantharaman,V. and Aravind,L. (2001) The CHASE domain: A predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors. Trends Biochem. Sci., 26, 579-582.
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 579-582
    • Anantharaman, V.1    Aravind, L.2
  • 16
    • 0035478296 scopus 로고    scopus 로고
    • CHASE: An extracellular sensing domain common to transmembrane receptors from prokaryotes, lower eukaryotes and plants
    • Mougel,C. and Zhulin,I.B. (2001) CHASE: An extracellular sensing domain common to transmembrane receptors from prokaryotes, lower eukaryotes and plants. Trends Biochem. Sci., 26, 582-584.
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 582-584
    • Mougel, C.1    Zhulin, I.B.2
  • 17
    • 0037215715 scopus 로고    scopus 로고
    • Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea
    • Zhulin,I.B., Nikolskaya,A.N. and Galperin,M.Y. (2003) Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea. J. Bacteriol., 185, 285-294.
    • (2003) J. Bacteriol. , vol.185 , pp. 285-294
    • Zhulin, I.B.1    Nikolskaya, A.N.2    Galperin, M.Y.3
  • 18
    • 0037333759 scopus 로고    scopus 로고
    • The NIT domain: A predicted nitrate-responsive module in bacterial sensory receptors
    • Shu,C.J., Ulrich,L.E. and Zhulin,I.B. (2003) The NIT domain: A predicted nitrate-responsive module in bacterial sensory receptors. Trends Biochem. Sci., 28, 121-124.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 121-124
    • Shu, C.J.1    Ulrich, L.E.2    Zhulin, I.B.3
  • 19
    • 28944454614 scopus 로고    scopus 로고
    • Four-helix bundle: A ubiquitous sensory module in prokaryotic signal transduction
    • Ulrich,L.E. and Zhulin,I.B. (2005) Four-helix bundle: A ubiquitous sensory module in prokaryotic signal transduction. Bioinformatics, 21 (Suppl. 3), iii45-iii48.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 3
    • Ulrich, L.E.1    Zhulin, I.B.2
  • 20
    • 0033277340 scopus 로고    scopus 로고
    • The histidine protein kinase superfamily
    • Grebe,T.W. and Stock,J.B. (1999) The histidine protein kinase superfamily. Adv. Microb. Physiol., 41, 139-227.
    • (1999) Adv. Microb. Physiol. , vol.41 , pp. 139-227
    • Grebe, T.W.1    Stock, J.B.2
  • 21
    • 0035845587 scopus 로고    scopus 로고
    • Novel domains of the prokaryotic two-component signal transduction systems
    • Galperin,M.Y., Nikolskaya,A.N. and Koonin,E.V. (2001) Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol. Lett., 203, 11-21.
    • (2001) FEMS Microbiol. Lett. , vol.203 , pp. 11-21
    • Galperin, M.Y.1    Nikolskaya, A.N.2    Koonin, E.V.3
  • 22
    • 0035254950 scopus 로고    scopus 로고
    • GGDEF domain is homologous to adenylyl cyclase
    • Pei,J. and Grishin,N.V. (2001) GGDEF domain is homologous to adenylyl cyclase. Proteins, 42, 210-216.
    • (2001) Proteins , vol.42 , pp. 210-216
    • Pei, J.1    Grishin, N.V.2
  • 23
    • 0036160325 scopus 로고    scopus 로고
    • ANTAR: An RNA-binding domain in transcription antitermination regulatory proteins
    • Shu,C.J. and Zhulin,I.B. (2002) ANTAR: An RNA-binding domain in transcription antitermination regulatory proteins. Trends Biochem. Sci., 27, 3-5.
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 3-5
    • Shu, C.J.1    Zhulin, I.B.2
  • 27
    • 0347126296 scopus 로고    scopus 로고
    • DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
    • Makita,Y., Nakao,M., Ogasawara,N. and Nakai,K. (2004) DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res., 32, D75-D77.
    • (2004) Nucleic Acids Res. , vol.32
    • Makita, Y.1    Nakao, M.2    Ogasawara, N.3    Nakai, K.4
  • 28
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 33
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2005) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 33, D501-D504.
    • (2005) Nucleic Acids Res. , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 34
    • 2142657817 scopus 로고    scopus 로고
    • A combined transmembrane topology and signal peptide prediction method
    • Kall,L., Krogh,A. and Sonnhammer,E.L. (2004) A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol., 338, 1027-1036.
    • (2004) J. Mol. Biol. , vol.338 , pp. 1027-1036
    • Kall, L.1    Krogh, A.2    Sonnhammer, E.L.3
  • 35
    • 0030004228 scopus 로고    scopus 로고
    • Prediction and analysis of coiled-coil structures
    • Lupas,A. (1996) Prediction and analysis of coiled-coil structures. Methods Enzymol., 266, 513-525.
    • (1996) Methods Enzymol. , vol.266 , pp. 513-525
    • Lupas, A.1
  • 36
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton,J.C. and Federhen,S. (1993) Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem., 17, 149-163.
    • (1993) Comput. Chem. , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 37
    • 0033534368 scopus 로고    scopus 로고
    • Structure of CheA, a signal-transducing histidine kinase
    • Bilwes,A.M., Alex,L.A., Crane,B.R. and Simon,M.I. (1999) Structure of CheA, a signal-transducing histidine kinase. Cell, 96, 131-141.
    • (1999) Cell , vol.96 , pp. 131-141
    • Bilwes, A.M.1    Alex, L.A.2    Crane, B.R.3    Simon, M.I.4


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