Tracking X-ray-derived redox changes in crystals of a methylamine dehydrogenase/amicyanin complex using single-crystal UV/Vis microspectrophotometry

Journal of Synchrotron Radiation

Volumn 14, Issue 1, 2007, Pages 92-98

  Pearson, Arwen R ^a   Pahl, Reinhard ^b   Kovaleva, Elena G ^a   Davidson, Victor L ^c   Wilmot, Carrie M ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

^c UNIVERSITY OF MISSISSIPPI MEDICAL CENTER   (United States)

Author keywords

Methylamine dehydrogenase; Reaction intermediates; Single crystal microspectrophotometry; Structural enzymology; Tryptophan tryptophylquinone

Indexed keywords

CRYSTALLOGRAPHY; ENZYMES; REDOX REACTIONS; SINGLE CRYSTALS; SPECTROPHOTOMETRY; ULTRAVIOLET RADIATION; X RAY ANALYSIS;

AMICYANIN COMPLEX; METHYLAMINE DEHYDROGENASE; MICROSPECTROPHOTOMETRY; REACTION INTERMEDIATES; STRUCTURAL ENZYMOLOGY; TRYPTOPHAN TRYPTOPHYLQUINONE;

CRYSTALLINE MATERIALS;

AMINE DEHYDROGENASE; BACTERIAL PROTEIN; MAUC PROTEIN, METHYLOBACTERIUM EXTORQUENS; MULTIPROTEIN COMPLEX; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; CHEMISTRY; ENZYMOLOGY; METHODOLOGY; OXIDATION REDUCTION REACTION; PARACOCCUS DENITRIFICANS; PROTEIN CONFORMATION; RADIATION DOSE; RADIATION EXPOSURE; RADIATION RESPONSE; ULTRASTRUCTURE; ULTRAVIOLET SPECTROPHOTOMETRY; X RAY;

BACTERIAL PROTEINS; DOSE-RESPONSE RELATIONSHIP, RADIATION; MULTIPROTEIN COMPLEXES; OXIDATION-REDUCTION; OXIDOREDUCTASES ACTING ON CH-NH GROUP DONORS; PARACOCCUS DENITRIFICANS; PROTEIN CONFORMATION; RADIATION DOSAGE; SPECTROPHOTOMETRY, ULTRAVIOLET; X-RAYS;

EID: 33846085666     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S0909049506051259     Document Type: Conference Paper

References (35)

1. Adam, V., Royant, A., Nivière, V., Molina-Heredia, F. P. & Bourgeois, D. (2004). Structure, 12, 1729-1740.
2. Bamford, V. A., Bruno, S., Rasmussen, T., Appia-Ayme, C., Cheesman, M. R., Berks, B. C. & Hemmings, A. M. (2002). EMBO J. 21, 5599-5610.
3. Berglund, G. I., Carlsson, G. H., Smith, A. T., Szoke, H., Henriksen, A. & Hajdu, J. (2002). Nature (London), 417, 463-468.
4. Bourgeois, D. & Royant, A. (2005). Curr. Opin. Struct. Biol. 15, 538-547.
5. Burmeister, W. P. (2000). Acta Cryst. D56, 328-341.
6. Cavazza, A., Contreras-Martel, C, Pieulle, L., Chabrière, E., Hatchikian, E. C. & Fontecilla-Camps, J. C. (2006). Structure, 14, 217-224.
7. Chen, L. et al. (1992). Biochemistry, 31, 4959-4964.
8. Davidson, V. L. (2005). Bioorg. Chem. 33, 159-170.
9. De la Mora, T. et al. (2007). In preparation.
10. Dias, J. M., Alves, T., Bonifacio, C., Pereira, A. S., Trincao, J., Bourgeois, D., Moura, I. & Romao, M. J. (2004). Structure, 12, 961-973.
11. Dubnovitsky, A. P., Ravelli, R. B. G., Popov, A. N. & Papageorgiou, A. C. (2005). Protein Sci. 14, 1498-1507.
12. Garman, E. F. & Owen, R. L. (2006). Acta Cryst. D62, 32-47.
13. Hadfield, A. & Hajdu, J. (1993). J. Appl. Cryst. 26, 839-842.
14. Husain, M. & Davidson, V. L. (1985). J. Biol. Chem. 260, 14626-14629.
15. Husain, M. & Davidson, V. L. (1986). J. Biol. Chem. 261, 8577-8580.
16. Husain, M., Davidson, V. L., Gray, K. A. & Knaff, D. B. (1987). Biochemistry, 26, 4139-4143.
17. Karlsson, A., Parales, J. V., Parales, R. E., Gibson, D. T., Eklund, H. & Ramaswamy, S. (2000). J. Inorg. Biochem. 78, 83-87.
18. Kort, R., Komori, H., Adachi, S.-I., Miki, K. & Eker, A. (2004). Acta Cryst. D60, 1205-1213.
19. Kuzmic, P. (1996). Anal. Biochem. 237, 260-273.
20. McIntire, W. S., Wemmer, D. E., Chistoserdov, A. & Lidstrom, M. E. (1991). Science, 252, 817-824.
21. Matsui, Y., Sakai, K., Murakami, M., Shiro, Y., Adachi, S.-I., Okamura, H. & Kouyama, T. (2002). J. Mol. Biol. 324, 469-481.
22. Merli, A., Brodersen, D. E., Morini, B., Chen, Z., Durley, R. C., Mathews, F. S., Davidson, V. L. & Rossi, G. L. (1996). J. Biol. Chem. 271, 9177-9180.
23. Murray, J. W., Garman, E. F. & Ravelli, R. B. G. (2004). J. Appl. Cryst. 37, 513-522.
24. Nave, C. & Garman, E. F. (2005). J. Synchrotron Rad. 12, 257-260.
25. Noble, M. E. M. (1996). PREDICT, http://biop.ox.ac.uk/www/distrib/ predict.html.
26. Pearson, A. R., Mozzarelli, A. & Rossi, G. L. (2004). Curr. Opin. Struct. Biol. 14, 656-662.
27. Pearson, A. R. & Wilmot, C. M. (2003). Biochim. Biophys. Acta, 1647, 381-389.
28. Ravelli, R. B. G. & McSweeney, S. M. (2000). Structure, 8, 315-328.
29. Sato, M., Shibata, N., Morimoto, Y., Takayama, Y., Ozawa, K., Akutsu, H., Higuchi, Y. & Yasuoka, N. (2004). J. Synchrotron Rad. 11, 113-116.
30. Schlichting, I., Berendzen, J., Chu, K., Stock, A. M., Maves, S. A., Benson, D. E., Sweet, R. M., Ringe, D., Petsko, G. A. & Sligar, S. G. (2000). Science, 287, 1615-1622.
31. Sjögren, T. & Hajdu, J. (2001). J. Biol. Chem. 276, 13072-13076.
32. Unno, M., Matsui, T., Chu, G. C., Couture, M., Yoshida, T., Rousseau, D. L., Olson, J. S. & Ikeda-Saito, M. (2004). J. Biol. Chem. 279, 21055-21061.
33. Weik, M., Ravelli, R. B. G., Kryger, G., McSweeney, S., Raves, M. L., Harel, M., Gros, P., Silman, I. & Sussman, J. L. (2000). Proc. Natl. Acad. Sci. USA, 97, 623-628.
34. Wilmot, C. M., Sjögren, T., Carlsson, G. H., Berglund, G. I. & Hajdu, J. (2002). Methods Enzymol. 353, 301-318.
35. Yano, J., Kern, J., Irrgang, K.-D., Latimer, M., Bergmann, U., Glatzel, P., Pushkar, Y., Biesiadka, J., Loll, B., Sauer, K., Messinger, J., Zouni, A. & Yachandra, V. K. (2005). Proc. Natl. Acad. Sci. USA, 102, 12047-12052.