Competitive displacement of DNA during surface hybridization

Biophysical Journal

Volumn 92, Issue 1, 2007, Pages

  Bishop, J ^a   Wilson, C ^a   Chagovetz, A M ^a   Blair, S ^a  

^a Department of Electrical and Computer Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BINDING AFFINITY; COMPETITIVE INHIBITION; DNA HYBRIDIZATION; DNA MICROARRAY; FLUORESCENCE; PROTEIN FOLDING; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 33846018540     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.097121     Document Type: Article

References (10)

1. Halperin, A., A. Buhot, and E. B. Zhulina. 2004. Sensitivity, specificity, and the hybridization isotherms of DNA chips. Biophys. J. 86:718-730.
2. Bhanot, G., Y. Louzoun, J. Zhu, and C. DeLisi. 2003. The importance of thermodynamic equilibrium for high throughput gene expression arrays. Biophys. J. 84:124-135.
3. Halperin, A., A. Buhot, and E. B. Zhulina. 2006. On the hybridization isotherms of DNA microarrays: the Langmuir model and its extensions. J. Phys. Condens. Matter. 18:S463-S490.
4. Tawa, K., D. Yao, and W. Knoll. 2005. Matching basepair number dependence of the kinetics of DNA-DNA hybridization studied by surface plasmon fluorescence spectroscopy. Biosens. Bioelectron. 21:322-329.
5. Bishop, J., S. Blair, and A. M. Chagovetz. 2006. A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants. Biophys. J. 90:831-840.
6. Zhang, Y., D. A. Hammer, and D. J. Graves. 2005. Competitive hybridization kinetics reveals unexpected behavior patterns. Biophys. J. 89:2950-2959.
7. Markham, N. R., and M. Zuker. 2005. DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res. 33:W577-W581.
8. Dai, H., M. Meyer, S. Stepaniants, M. Ziman, and R. Stoughton. 2002. Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays. Nucleic Acids Res. 30:e86-1-8.
9. Plum, G. E., and K. J. Breslauer. 2002. Fluorescence energy transfer monitored competitive equilibria of nucleic acids: applications in thermodynamics and screening. Biopolymers. 61:214-223.
10. Kim, J., S. Doose, H. Neuweiler, and M. Sauer. 2006. The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. Nucleic Acids Res. 34:2516-2527.