Two crystal structures of the isochorismate pyruvate lyase from Pseudomonas aeruginosa

Journal of Biological Chemistry

Volumn 281, Issue 44, 2006, Pages 33441-33449

  Zaitseva, Jelena ^a   Lu, Jingping ^a   Olechoski, Kelli L ^a   Lamb, Audrey L ^a  

^a UNIVERSITY OF KANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMICROBIAL DRUGS; CHORISMATE MUTASES; PSEUDOMONAS AERUGINOSA;

AMINO ACIDS; BIOSYNTHESIS; CATALYSIS; CRYSTAL STRUCTURE; DIMERS; DRUG PRODUCTS; NITRATES; VIRUSES;

ENZYMES;

APOLIPOPROTEIN; BACTERIAL ENZYME; ISOCHORISMATE PYRUVATE LYASE; PCHB ENZYME; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PSEUDOMONAS AERUGINOSA; VIRULENCE;

AMINO ACID SEQUENCE; APOENZYMES; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; ISOENZYMES; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXO-ACID-LYASES; PROTEIN STRUCTURE, TERTIARY; PSEUDOMONAS AERUGINOSA; PYRUVIC ACID; SEQUENCE ALIGNMENT; STRUCTURAL HOMOLOGY, PROTEIN;

BACTERIA (MICROORGANISMS); PSEUDOMONAS AERUGINOSA;

EID: 33845925764     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605470200     Document Type: Article

References (38)

1. Sriyosachati, S., and Cox, C. D. (1986) Infect. Immun. 52, 885-891
2. Marahiel, M. A., Stachelhaus, T., and Mootz, H. D. (1997) Chem. Rev. 97, 2651-2674
3. Visca, P., Leoni, L., Wilson, M. J., and Lamont, I. L. (2002) Mol. Microbiol. 45, 1177-1190
4. Raymond, K. N., Dertz, E. A., and Kim, S. S. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 3584-3588
5. Crosa, J. H., and Walsh, C. T. (2002) Microbiol. Mol. Biol. Rev. 66, 223-249
6. Harrison, A. J., Ramsay, R. J., Baker, E. N., and Lott, J. S. (2005) Acta Crystallogr Sect. F Struct. Biol. Cryst. Commun. 61, 121-123
7. Ferreras, J. A., Ryu, J. S., Di Lello, F., Tan, D. S., and Quadri, L. E. (2005) Nat. Chem. Biol. 1, 29-32
8. Payne, R. J., Kerbarh, O., Miguel, R. N., Abell, A. D., and Abell, C. (2005) Org. Biomol. Chem. 3, 1825-1827
9. Kerbarh, O., Ciulli, A., Howard, N. I., and Abell, C. (2005) J. Bacteriol. 187, 5061-5066
10. Kerbarh, O., Chirgadze, D. Y., Blundell, T. L., and Abell, C. (2006) J. Mol. Biol. 357, 524-534
11. Serino, L., Reimmann, C., Baur, H., Beyeler, M., Visca, P., and Haas, D. (1995) Mol. Gen. Genet. 249, 217-228
12. Serino, L., Reimmann, C., Visca, P., Beyeler, M., Chiesa, V. D., and Haas, D. (1997) J. Bacteriol. 179, 248-257
13. Gaille, C., Kast, P., and Haas, D. (2002) J. Biol. Chem. 277, 21768-21775
14. Gaille, C., Reimmann, C., and Haas, D. (2003) J. Biol. Chem. 278, 16893-16898
15. Quadri, L. E., Sello, J., Keating, T. A., Weinreb, P. H., and Walsh, C. T. (1998) Chem. Biol. 5, 631-645
16. Nakai, T., Mizutani, H., Miyahara, I., Hirotsu, K., Takeda, S., Jhee, K. H., Yoshimura, T., and Esaki, N. (2000) J. Biochem. (Tokyo) 128, 29-38
17. Gallagher, D. T., Mayhew, M., Holden, M. J., Howard, A., Kim, K. J., and Vilker, V. L. (2001) Proteins 44, 304-311
18. Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M. C., Yanofsky, C., and Mills, S. E. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 6021-6026
19. Okvist, M., Dey, R., Sasso, S., Grahn, E., Kast, P., and Krengel, U. (2006) J. Mol. Biol. 357, 1483-1499
20. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
21. McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C., and Read, R. J. (2005) Acta Crystallogr. Sect. D Biol. Crystallgr. 61, 458-464
22. Lee, A. Y., Karplus, P. A., Ganem, B., and Clardy, J. (1995) J. Am. Chem. Soc. 117, 3627-3628
23. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
24. Brunger, A. T., Adams, P. D., LClore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
25. Laskowski, R., MacArthur, M., Moss, D., and Thornton, J. (1993) J. Appl. Crystallogr. 26
26. Collaborative Computational Project, Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallgr. 50, 760-763
27. Kleywegt, G. J., and Jones, T. A. (1997) Methods Enzymol. 277, 525-545
28. Kleywegt, G. J., Bergfors, T., Senn, H., Le Motte, P., Gsell, B., Shudo, K., and Jones, T. A. (1994) Structure 2, 1241-1258
29. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950
30. DeLano, W. L. (2002) The PyMol Molecular Graphics System, DeLano Scientific, San Carlos, CA
31. Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) Protein Eng. 8, 127-134
32. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138
33. Strajbl, M., Shurki, A., Kato, M., and Warshel, A. (2003) J. Am. Chem. Soc. 125, 10228-10237
34. Zhang, X., and Bruice, T. C. (2005) Biochemistry 44, 10443-10448
35. Andrews, P. R., Smith, G. D., and Young, I. G. (1973) Biochemistry 12, 3492-3498
36. Kunzler, D. E., Sasso, S., Gamper, M., Hilvert, D., and Kast, P. (2005) J. Biol. Chem. 280, 32827-32834
37. DeClue, M. S., Baldridge, K. K., Kunzler, D. E., Kast, P., and Hilvert, D. (2005) J. Am. Chem. Soc. 127, 15002-15003
38. Copley, S. D., and Knowles, J. R. (1985) J. Am. Chem. Soc. 107, 5306-5308