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Volumn 13, Issue 2, 2007, Pages 179-188

RNA multiple structural alignment with longest common subsequences

Author keywords

Dynamic programming; Longest common subsequence; RNA multiple structure alignment

Indexed keywords

ALGORITHMS; COMPUTATION THEORY; DYNAMIC PROGRAMMING; POLYNOMIALS;

EID: 33845917083     PISSN: 13826905     EISSN: 15732886     Source Type: Journal    
DOI: 10.1007/s10878-006-9020-x     Document Type: Article
Times cited : (10)

References (23)
  • 3
    • 0013775257 scopus 로고
    • Computer aids to protein sequence determination
    • Dayhoff M (1965) Computer aids to protein sequence determination. J Theoret Biol 8(1):97-112
    • (1965) J Theoret Biol , vol.8 , Issue.1 , pp. 97-112
    • Dayhoff, M.1
  • 4
    • 0014547638 scopus 로고
    • Computer analysis of protein evolution
    • Dayhoff M (1969) Computer analysis of protein evolution. Sci Am 221(1):86-95
    • (1969) Sci Am , vol.221 , Issue.1 , pp. 86-95
    • Dayhoff, M.1
  • 5
    • 35048886517 scopus 로고    scopus 로고
    • A computational model for RNA multiple structural alignment
    • Proc. 15th Ann. Symp. Combinatorial Pattern Matching
    • Davydov E, Batzoglu S (2004) A computational model for RNA multiple structural alignment. In: Proc. 15th Ann. Symp. Combinatorial Pattern Matching, LNCS 3109, pp 254-269
    • (2004) LNCS , vol.3109 , pp. 254-269
    • Davydov, E.1    Batzoglu, S.2
  • 6
    • 84869200923 scopus 로고    scopus 로고
    • A PTAS for distinguishing (sub)string selection
    • Deng X, Li G, Li Z, Ma B, Wang L (2002) A PTAS for distinguishing (sub)string selection. In: Proc. ICALP'02, pp 740-751
    • (2002) Proc. ICALP'02 , pp. 740-751
    • Deng, X.1    Li, G.2    Li, Z.3    Ma, B.4    Wang, L.5
  • 7
    • 0035656688 scopus 로고    scopus 로고
    • Noncoding RNA genes and the modern RNA world
    • Eddy SR (2001) Noncoding RNA genes and the modern RNA world. Nat Rev Genet 2:919-929
    • (2001) Nat Rev Genet , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 9
    • 33845926393 scopus 로고    scopus 로고
    • Bounds on the Number of the Longest Common Subsequence Problem
    • cs.DM/0301030
    • Greenberg RI (2003) Bounds on the Number of the Longest Common Subsequence Problem. CoRR cs.DM/0301030
    • (2003) CoRR
    • Greenberg, R.I.1
  • 11
    • 0021293897 scopus 로고
    • Computing a longest common subsequence for a set of strings
    • Hsu WJ, Du MW (1984) Computing a longest common subsequence for a set of strings. BIT 24:45-59
    • (1984) BIT , vol.24 , pp. 45-59
    • Hsu, W.J.1    MW, D.2
  • 12
    • 0029497647 scopus 로고
    • On the approximation of shortest common supersequences and longest common subsequences
    • Jiang T, Li M (1995) On the approximation of shortest common supersequences and longest common subsequences. SIAM J Comput 24(5):1122-1139
    • (1995) SIAM J Comput , vol.24 , Issue.5 , pp. 1122-1139
    • Jiang, T.1    Li, M.2
  • 13
    • 33746064886 scopus 로고    scopus 로고
    • Approximation of RNA multiple structural alignment
    • Proc. 17th Ann Symp Combinatorial Pattern Matching
    • Kubica M, Rizzi R, Vialette S, Walen T (2006) Approximation of RNA multiple structural alignment. In: Proc. 17th Ann Symp Combinatorial Pattern Matching, LNCS 4009, pp 211-222
    • (2006) LNCS , vol.4009 , pp. 211-222
    • Kubica, M.1    Rizzi, R.2    Vialette, S.3    Walen, T.4
  • 15
    • 0032654634 scopus 로고    scopus 로고
    • M, Ma B, Wang L (1999) Finding similar regions in many strings. In: Proc. 31st ACM Symp. on Theory of Computing (STOC'99), pp 473-482
    • M, Ma B, Wang L (1999) Finding similar regions in many strings. In: Proc. 31st ACM Symp. on Theory of Computing (STOC'99), pp 473-482
  • 16
    • 84976657294 scopus 로고
    • The complexity of some problems on subsequences and supersequences
    • Maier D (1978) The complexity of some problems on subsequences and supersequences. J ACM 25:322-336
    • (1978) J ACM , vol.25 , pp. 322-336
    • Maier, D.1
  • 19
    • 0033524952 scopus 로고    scopus 로고
    • A dynamic programming algorithm for RNA structure prediction including pseudoknots
    • Rivas E, Eddy SR (1999) A dynamic programming algorithm for RNA structure prediction including pseudoknots. J Mol Biol 285:2053-2068
    • (1999) J Mol Biol , vol.285 , pp. 2053-2068
    • Rivas, E.1    Eddy, S.R.2
  • 20
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS (1981) Identification of common molecular subsequences. J Mol Biol 147:195-197
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 21
    • 0142043283 scopus 로고    scopus 로고
    • The constrained longest common subsequence problem
    • Tsai Y-T (2003) The constrained longest common subsequence problem. Inform Proc Lett 88(4):173-176
    • (2003) Inform Proc Lett , vol.88 , Issue.4 , pp. 173-176
    • Tsai, Y.-T.1
  • 22
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zucker M, Stiegler P (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 9:133-148
    • (1981) Nucleic Acids Res , vol.9 , pp. 133-148
    • Zucker, M.1    Stiegler, P.2
  • 23
    • 0024806949 scopus 로고
    • Computer prediction of RNA structure
    • Zucker M (1989) Computer prediction of RNA structure. Methods Enzymol 180:262-288
    • (1989) Methods Enzymol , vol.180 , pp. 262-288
    • Zucker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.