-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J. Mol. Biol. 215: 403-410
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0030797388
-
Evidence for metabolism of o-xylene by simultaneous ring and methyl group oxidation in a new soil isolate
-
Bickerdike SR, Holt RA & Stephens GM (1997) Evidence for metabolism of o-xylene by simultaneous ring and methyl group oxidation in a new soil isolate. Microbiology 143: 2321-2329
-
(1997)
Microbiology
, vol.143
, pp. 2321-2329
-
-
Bickerdike, S.R.1
Holt, R.A.2
Stephens, G.M.3
-
4
-
-
0034530269
-
Distribution of catabolic pathways in some hydrocarbon-degrading bacteria from a subsurface polluted soil
-
Cavalca L, Di Gennaro P, Colombo M, Andreoni V, Bernasconi S, Ronco I & Bestetti G (2000) Distribution of catabolic pathways in some hydrocarbon-degrading bacteria from a subsurface polluted soil. Res. Microbiol. 151: 877-887
-
(2000)
Res. Microbiol
, vol.151
, pp. 877-887
-
-
Cavalca, L.1
Di Gennaro, P.2
Colombo, M.3
Andreoni, V.4
Bernasconi, S.5
Ronco, I.6
Bestetti, G.7
-
5
-
-
0034877347
-
Characterization of Rhodococcus opacus R7, a strain able to degrade naphthalene and o-xylene isolated from a polycyclic aromatic hydrocarbon-contaminated soil
-
Gennaro P, Rescalli E, Galli E, Sello G & Bestetti G (2001) Characterization of Rhodococcus opacus R7, a strain able to degrade naphthalene and o-xylene isolated from a polycyclic aromatic hydrocarbon-contaminated soil. Res. Microbiol. 152: 641-651
-
(2001)
Res. Microbiol
, vol.152
, pp. 641-651
-
-
Gennaro, P.1
Rescalli, E.2
Galli, E.3
Sello, G.4
Bestetti, G.5
-
6
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
7
-
-
0342937407
-
Potential of pseudomonads in the degradation of methylbenzenes
-
Galli E, Silver S & Witholt B Eds, American Society for Microbiology, Washington, DC
-
Galli E, Barbieri P & Bestetti G (1992) Potential of pseudomonads in the degradation of methylbenzenes. In: Galli E, Silver S & Witholt B (Eds) Pseudomonas: Molecular Biology and Biotechnology (pp. 268-276). American Society for Microbiology, Washington, DC
-
(1992)
Pseudomonas: Molecular Biology and Biotechnology
, pp. 268-276
-
-
Galli, E.1
Barbieri, P.2
Bestetti, G.3
-
8
-
-
0000757667
-
Microbial degradation of aromatic hydrocarbons
-
Gibson DT Ed, Marcel Dekker, New York, NY
-
Gibson DT & Subramanian V (1984) Microbial degradation of aromatic hydrocarbons. In: Gibson DT (Ed) Microbial Degradation of Organic Compounds (pp. 181-252). Marcel Dekker, New York, NY
-
(1984)
Microbial Degradation of Organic Compounds
, pp. 181-252
-
-
Gibson, D.T.1
Subramanian, V.2
-
10
-
-
0026805891
-
Functional and evolutionary relationships among diverse oxygenases
-
Harayama S, Kok M & Neidle EL (1992) Functional and evolutionary relationships among diverse oxygenases. Annu. Rev. Microbiol. 46: 565-601
-
(1992)
Annu. Rev. Microbiol
, vol.46
, pp. 565-601
-
-
Harayama, S.1
Kok, M.2
Neidle, E.L.3
-
11
-
-
0002911514
-
Construction of the gyrB Database for the Identification and Classification of Bacteria. Genome Inform. Ser
-
Kasai H, Watanabe K, Gasteiger E, Bairoch A, Isono K, Yamamoto S & Harayama S (1998) Construction of the gyrB Database for the Identification and Classification of Bacteria. Genome Inform. Ser. Workshop Genome Inform. 9: 13-21
-
(1998)
Workshop Genome Inform
, vol.9
, pp. 13-21
-
-
Kasai, H.1
Watanabe, K.2
Gasteiger, E.3
Bairoch, A.4
Isono, K.5
Yamamoto, S.6
Harayama, S.7
-
12
-
-
0036841860
-
Bacteria belonging to the genus cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment
-
Kasai Y, Kishira H & Harayama S (2002a) Bacteria belonging to the genus cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment. Appl. Environ. Microbiol. 68: 5625-5633
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5625-5633
-
-
Kasai, Y.1
Kishira, H.2
Harayama, S.3
-
13
-
-
0036001072
-
Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water
-
Kasai Y, Kishira H, Sasaki T, Syutsubo K, Watanabe K & Harayama S (2002b) Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water. Environ. Microbiol. 4: 141-147
-
(2002)
Environ. Microbiol
, vol.4
, pp. 141-147
-
-
Kasai, Y.1
Kishira, H.2
Sasaki, T.3
Syutsubo, K.4
Watanabe, K.5
Harayama, S.6
-
14
-
-
0036304123
-
Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17
-
Kim D, Kim YS, Kim SK, Kim SW, Zylstra GJ, Kim YM & Kim E (2002) Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17. Appl. Environ. Microbiol. 68: 3270-3278
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 3270-3278
-
-
Kim, D.1
Kim, Y.S.2
Kim, S.K.3
Kim, S.W.4
Zylstra, G.J.5
Kim, Y.M.6
Kim, E.7
-
15
-
-
10444279326
-
Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp strain DKI7
-
Kim D, Chae JC, Zylstra GJ, Kim YS, Kim SK, Nam MH, Kim YM & Kim E. (2004) Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp strain DKI7. Appl. Environ. Microbiol. 70: 7086-7092
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 7086-7092
-
-
Kim, D.1
Chae, J.C.2
Zylstra, G.J.3
Kim, Y.S.4
Kim, S.K.5
Nam, M.H.6
Kim, Y.M.7
Kim, E.8
-
16
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120
-
(1980)
J. Mol. Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
17
-
-
0028598687
-
Rhodococcus opacus sp. nov., An unusual nutritionally versatile Rhodococcus-species
-
Klatte S, Kroppenstedt RM & Rainey F (1994) Rhodococcus opacus sp. nov., An unusual nutritionally versatile Rhodococcus-species. Syst. Appl. Microbiol. 17: 355-360
-
(1994)
Syst. Appl. Microbiol
, vol.17
, pp. 355-360
-
-
Klatte, S.1
Kroppenstedt, R.M.2
Rainey, F.3
-
18
-
-
29144454726
-
Isolation and characterization of o-xylene oxygenase genes from Rhodococcus opacus TKN14
-
in press
-
Maruyama T, Ishikura M, Taki H, Shindo K, Kasai H, Haga M et al. (2005) Isolation and characterization of o-xylene oxygenase genes from Rhodococcus opacus TKN14. Appl. Environ. Microbiol. in press
-
(2005)
Appl. Environ. Microbiol
-
-
Maruyama, T.1
Ishikura, M.2
Taki, H.3
Shindo, K.4
Kasai, H.5
Haga, M.6
-
19
-
-
19944399433
-
The soil flagellate Heteromita globosa accelerates bacterial degradation of alkylbenzenes through grazing and acetate excretion in batch culture
-
Mattison RG, Taki H & Harayama S (2005) The soil flagellate Heteromita globosa accelerates bacterial degradation of alkylbenzenes through grazing and acetate excretion in batch culture. Microb. Ecol. 49: 142-150
-
(2005)
Microb. Ecol
, vol.49
, pp. 142-150
-
-
Mattison, R.G.1
Taki, H.2
Harayama, S.3
-
20
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
21
-
-
2342462885
-
Biodegradation of benzene by halophilic and halotolerant bacteria under aerobic conditions
-
Nicholson CA & Fathepure BZ (2004) Biodegradation of benzene by halophilic and halotolerant bacteria under aerobic conditions. Appl. Environ. Microbiol. 70: 1222-1225
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 1222-1225
-
-
Nicholson, C.A.1
Fathepure, B.Z.2
-
22
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N & Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
24
-
-
0023616388
-
Degradation 1,2-dimethylbenzene by Corynebacterium strain C125
-
Schraa G, Bethe BM, van Neerven AR, Van den Tweel WJ, Van der Wende E & Zehnder AJ (1987) Degradation 1,2-dimethylbenzene by Corynebacterium strain C125. Antonie Van Leeuwenhoek 53: 159-170
-
(1987)
Antonie Van Leeuwenhoek
, vol.53
, pp. 159-170
-
-
Schraa, G.1
Bethe, B.M.2
van Neerven, A.R.3
Van den Tweel, W.J.4
Van der Wende, E.5
Zehnder, A.J.6
-
25
-
-
0034045827
-
A Mycobacterium strain with extended capacities for degradation of gasoline hydrocarbons
-
Solano-Serena F, Marchal R, Casaregola S, Vasnier C, Lebeault JM & Vandecasteele JP (2000) A Mycobacterium strain with extended capacities for degradation of gasoline hydrocarbons. Appl. Environ. Microbiol. 66: 2392-2399
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2392-2399
-
-
Solano-Serena, F.1
Marchal, R.2
Casaregola, S.3
Vasnier, C.4
Lebeault, J.M.5
Vandecasteele, J.P.6
-
26
-
-
0035210375
-
Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains
-
Syutsubo K, Kishira H & Harayama S (2001) Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains. Environ. Microbiol. 3: 371-379
-
(2001)
Environ. Microbiol
, vol.3
, pp. 371-379
-
-
Syutsubo, K.1
Kishira, H.2
Harayama, S.3
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG & Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
33845908274
-
-
U.S.EPA (1997) Cleaning up the nation's waste sites: markets and technology trends, 1996 edition. EPA 542-R-96-005. EPA, Office of Solid Waste and Emergency Response, Washington, D.C
-
U.S.EPA (1997) Cleaning up the nation's waste sites: markets and technology trends, 1996 edition. EPA 542-R-96-005. EPA, Office of Solid Waste and Emergency Response, Washington, D.C
-
-
-
-
29
-
-
0000865235
-
Versatility of soil column experiments to study biodegradation of halogenated compounds under environmental conditions
-
van der Meer JR, Bosma TNP, de Bruin WP, Harms H, Holliger C, Rijnaarts HHM, Tros ME, Schraa G & Zehnder JB (1992) Versatility of soil column experiments to study biodegradation of halogenated compounds under environmental conditions. Biodegradation 3: 265-284
-
(1992)
Biodegradation
, vol.3
, pp. 265-284
-
-
van der Meer, J.R.1
Bosma, T.N.P.2
de Bruin, W.P.3
Harms, H.4
Holliger, C.5
Rijnaarts, H.H.M.6
Tros, M.E.7
Schraa, G.8
Zehnder, J.B.9
-
30
-
-
2942592050
-
Protein engineering of toluene-o-xylene monooxygenase from Pseudomonas stutzeri OX1 for synthesizing 4-methylresorcinol, methylhydroquinone, and pyrogallol
-
Vardar G & Wood TK (2004) Protein engineering of toluene-o-xylene monooxygenase from Pseudomonas stutzeri OX1 for synthesizing 4-methylresorcinol, methylhydroquinone, and pyrogallol. Appl. Environ. Microbiol. 70: 3253-3262
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 3253-3262
-
-
Vardar, G.1
Wood, T.K.2
-
31
-
-
0029973418
-
Bioaugmentation as a soil bioremediation approach
-
Vogel TM (1996) Bioaugmentation as a soil bioremediation approach. Curr. Opin. Biotechnol. 7: 311-316
-
(1996)
Curr. Opin. Biotechnol
, vol.7
, pp. 311-316
-
-
Vogel, T.M.1
-
32
-
-
0031734089
-
Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge
-
Watanabe K, Teramoto M, Futamata H & Harayama S (1998) Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge. Appl. Environ. Microbiol. 64: 4396-4402
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 4396-4402
-
-
Watanabe, K.1
Teramoto, M.2
Futamata, H.3
Harayama, S.4
-
33
-
-
0028672045
-
The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas
-
Williams PA & Sayers JR (1994) The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation 5: 195-217
-
(1994)
Biodegradation
, vol.5
, pp. 195-217
-
-
Williams, P.A.1
Sayers, J.R.2
-
34
-
-
0028948030
-
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
-
Yamamoto S & Harayama S (1995) PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 61: 1104-1109
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 1104-1109
-
-
Yamamoto, S.1
Harayama, S.2
-
35
-
-
0029863154
-
Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products
-
Yamamoto S & Harayama S (1996) Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int. J. Syst. Bacteriol. 46: 506-511
-
(1996)
Int. J. Syst. Bacteriol
, vol.46
, pp. 506-511
-
-
Yamamoto, S.1
Harayama, S.2
|