-
1
-
-
0007775651
-
"The complete amino acid sequence of visual rhodopsin"
-
Yu. A. Ovchinnikov, N. G. Abdulaev, N. Yu. Feigina, I. D. Artamonov, and A. S. Zolotarev, "The complete amino acid sequence of visual rhodopsin," Bioorgan. Khimiya, 8, No. 10, 1424-1427 (1982).
-
(1982)
Bioorgan. Khimiya
, vol.8
, Issue.10
, pp. 1424-1427
-
-
Ovchinnikov, Yu.A.1
Abdulaev, N.G.2
Feigina, N.Yu.3
Artamonov, I.D.4
Zolotarev, A.S.5
-
2
-
-
33845873575
-
"Conformational mobility and the interaction of domains in rhodopsin"
-
I. D. Pogozheva, V. A. Kuznetsov, V. A. Livshits, and M. A. Ostrovskii, "Conformational mobility and the interaction of domains in rhodopsin," Biol. Membrany, 2, No. 9, 897-905 (1985).
-
(1985)
Biol. Membrany
, vol.2
, Issue.9
, pp. 897-905
-
-
Pogozheva, I.D.1
Kuznetsov, V.A.2
Livshits, V.A.3
Ostrovskii, M.A.4
-
3
-
-
33845871168
-
"Light-induced changes in the hydrophilic region of the rhodopsin molecule. EPR spectroscopic study with saturation transfer"
-
I. D. Pogozheva, V. A. Kuznetsov, V. A. Livshits, I. B. Fedorovich, and M. A. Ostrovskii, "Light-induced changes in the hydrophilic region of the rhodopsin molecule. EPR spectroscopic study with saturation transfer," Biol. Membrany, 2, No. 9, 880-896 (1985).
-
(1985)
Biol. Membrany
, vol.2
, Issue.9
, pp. 880-896
-
-
Pogozheva, I.D.1
Kuznetsov, V.A.2
Livshits, V.A.3
Fedorovich, I.B.4
Ostrovskii, M.A.5
-
4
-
-
33845900435
-
"Location of transducin binding sites by directed modification of SH groups in rhodopsin"
-
I. D. Pogozheva, T. F. Shevchenko, and G. R. Kalamkarov, "Location of transducin binding sites by directed modification of SH groups in rhodopsin," Biol. Membrany, 8, No. 1, 44-49 (1991).
-
(1991)
Biol. Membrany
, vol.8
, Issue.1
, pp. 44-49
-
-
Pogozheva, I.D.1
Shevchenko, T.F.2
Kalamkarov, G.R.3
-
5
-
-
18744390528
-
"Molecular dynamic methods for the simulation of physical and biological processes"
-
in: [in Russian]
-
Kh. T. Kholmurodov, M. V. Altaiskii, I. V. Puzynin, T. Dardin, and F. P. Filatov, "Molecular dynamic methods for the simulation of physical and biological processes," in: The Physics of Elementary Particles and Atomic Nuclei [in Russian] (2003), Vol. 34, Part 2, pp. 474-515.
-
(2003)
The Physics of Elementary Particles and Atomic Nuclei
, vol.34
, Issue.PART 2
, pp. 474-515
-
-
Kholmurodov, Kh.T.1
Altaiskii, M.V.2
Puzynin, I.V.3
Dardin, T.4
Filatov, F.P.5
-
6
-
-
0033594988
-
"Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: A site-directed spin-labeling study"
-
C. Altenbach, K. Cai, H. G. Khorana, and W. L. Hubbell, "Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: A site-directed spin-labeling study," Biochemistry, 38, No. 25, 7931-7937 (1999).
-
(1999)
Biochemistry
, vol.38
, Issue.25
, pp. 7931-7937
-
-
Altenbach, C.1
Cai, K.2
Khorana, H.G.3
Hubbell, W.L.4
-
7
-
-
0035951097
-
"Structure and function in rhodopsin: Mapping light-dependent changes in distance between residue 65 in helix TM1 and residues in the sequence 306-319 at the cytoplasmic end of helix TM7 and in helix H8"
-
C. Altenbach, K. Cai, J. Klein-Seetharaman, H. G. Khorana, and W. L. Hubbell, "Structure and function in rhodopsin: Mapping light-dependent changes in distance between residue 65 in helix TM1 and residues in the sequence 306-319 at the cytoplasmic end of helix TM7 and in helix H8," Biochemistry, 40, No. 51, 15483-15492 (2001).
-
(2001)
Biochemistry
, vol.40
, Issue.51
, pp. 15483-15492
-
-
Altenbach, C.1
Cai, K.2
Klein-Seetharaman, J.3
Khorana, H.G.4
Hubbell, W.L.5
-
8
-
-
0032546596
-
"Spectroscopic evidence for interaction between trans-membrane helices 3 and 5 in rhodopsin"
-
M. Beck, T. P. Sakmar, and F. Siebert, "Spectroscopic evidence for interaction between trans-membrane helices 3 and 5 in rhodopsin," Biochemistry, 37, No. 20, 7630-7639 (1998).
-
(1998)
Biochemistry
, vol.37
, Issue.20
, pp. 7630-7639
-
-
Beck, M.1
Sakmar, T.P.2
Siebert, F.3
-
9
-
-
33750587438
-
"Molecular dynamics with coupling to an external bath"
-
H. J. C. Berendson, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak, "Molecular dynamics with coupling to an external bath," J. Chem. Phys., 81, 3684-3690 (1984).
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendson, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
10
-
-
0029829057
-
"Mechanisms of opsin activation"
-
J. Buczylko, J. C. Saari, R. K. Crouch, and K. Palczewski, "Mechanisms of opsin activation," J. Biol. Chem., 271, No. 34, 20621-20630 (1996).
-
(1996)
J. Biol. Chem.
, vol.271
, Issue.34
, pp. 20621-20630
-
-
Buczylko, J.1
Saari, J.C.2
Crouch, R.K.3
Palczewski, K.4
-
11
-
-
0033594866
-
"Single-cysteine substitution mutants at amino acid positions 306-321 in rhodopsin, the sequence between the cytoplasmic end of helix VII and the palmitoylation sites: Sulfhydryl reactivity and transducin activation reveal a tertiary structure"
-
K. Cai, J. Klein-Seetharaman, D. Farrens, C. Zhang, C. Altenbach, W. L. Hubbell, and H. G. Khorana, "Single-cysteine substitution mutants at amino acid positions 306-321 in rhodopsin, the sequence between the cytoplasmic end of helix VII and the palmitoylation sites: Sulfhydryl reactivity and transducin activation reveal a tertiary structure," Biochemistry, 38, No. 25, 7925-7930 (1999).
-
(1999)
Biochemistry
, vol.38
, Issue.25
, pp. 7925-7930
-
-
Cai, K.1
Klein-Seetharaman, J.2
Farrens, D.3
Zhang, C.4
Altenbach, C.5
Hubbell, W.L.6
Khorana, H.G.7
-
12
-
-
0003982649
-
-
University of California
-
D. A. Case, D. A. Pearlman, J. W. Caldwell, T. E. Cheatham III, W. S. Ross, C. L. Simmerling, T. A. Darden, K. M. Merz, R. V. Stanton, A. L. Cheng, J. J. Vincent, M. Crowley, D. M. Ferguson, R. J. Radmer, G. L. Seibel, U. C. Singh, P. K. Weiner, and P. A. Kollman, AMBER-5, University of California (1997).
-
(1997)
AMBER-5
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.L.10
Vincent, J.J.11
Crowley, M.12
Ferguson, D.M.13
Radmer, R.J.14
Seibel, G.L.15
Singh, U.C.16
Weiner, P.K.17
Kollman, P.A.18
-
13
-
-
0034724212
-
"Structure and function in rhodopsin: Destabilization of rhodopsin by the binding of an antibody at the N-terminal segment provides support for involvement of the latter in an intradiscal tertiary structure"
-
K. Cha, P. J. Reeves, and H. G. Khorana, "Structure and function in rhodopsin: Destabilization of rhodopsin by the binding of an antibody at the N-terminal segment provides support for involvement of the latter in an intradiscal tertiary structure," Proc. Natl. Acad. Sci. USA, 97, No. 7, 3016-3021 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, Issue.7
, pp. 3016-3021
-
-
Cha, K.1
Reeves, P.J.2
Khorana, H.G.3
-
14
-
-
0029011701
-
"A second generation force field for the simulation of proteins, nucleic acids, and organic molecules"
-
W. D. Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, Jr., D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman, "A second generation force field for the simulation of proteins, nucleic acids, and organic molecules," J. Amer. Chem. Soc., 117, 5179-5197 (1995).
-
(1995)
J. Amer. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, P.A.9
Kollman, J.W.10
-
15
-
-
0141927102
-
"Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: Coupling between local retinal and larger scale conformational change"
-
P. S. Crozier, M. J. Stevens, L. R. Forrest, and T. B. Woolf, "Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: Coupling between local retinal and larger scale conformational change," J. Mol. Biol., 333, No. 3, 493-514 (2003).
-
(2003)
J. Mol. Biol.
, vol.333
, Issue.3
, pp. 493-514
-
-
Crozier, P.S.1
Stevens, M.J.2
Forrest, L.R.3
Woolf, T.B.4
-
16
-
-
0014272718
-
"The photosensitivities of visual pigments in the presence of hydroxylamine"
-
H. Dartnall, "The photosensitivities of visual pigments in the presence of hydroxylamine," Vision Res., 8, 339-358 (1968).
-
(1968)
Vision Res.
, vol.8
, pp. 339-358
-
-
Dartnall, H.1
-
17
-
-
0027374544
-
"Protonation states of membrane-embedded carboxylic acid groups in rhodopsin and metarhodopsin II: A Fourier-transform infrared spectroscopy study of site-directed mutants"
-
K. Fahmy, F. Jager, M. Beck, T. A. Zvyaga, T. P. Sakmar, and F. Siebert, "Protonation states of membrane-embedded carboxylic acid groups in rhodopsin and metarhodopsin II: A Fourier-transform infrared spectroscopy study of site-directed mutants," Proc. Natl. Acad. Sci. USA, 90, No. 21, 10206-10210 (1993).
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, Issue.21
, pp. 10206-10210
-
-
Fahmy, K.1
Jager, F.2
Beck, M.3
Zvyaga, T.A.4
Sakmar, T.P.5
Siebert, F.6
-
18
-
-
0020020228
-
"Structural analysis of carbohydrate moiety of bovine rhodopsin"
-
M. N. Fukuda, D. S. Papermaster, and P. A. Hargrave, "Structural analysis of carbohydrate moiety of bovine rhodopsin," Meth. Enzymol., 81, 214-223 (1982).
-
(1982)
Meth. Enzymol.
, vol.81
, pp. 214-223
-
-
Fukuda, M.N.1
Papermaster, D.S.2
Hargrave, P.A.3
-
19
-
-
0032541084
-
"G-protein-coupled receptor"
-
U. Gether and B. K. Kobilka, "G-protein-coupled receptor," J. Biol. Chem., 273, 17979-17982 (1998).
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 17979-17982
-
-
Gether, U.1
Kobilka, B.K.2
-
20
-
-
0001149659
-
"Femtosecond polarized pump-probe and stimulated emission spectroscopy of the isomerization reaction of rhodopsin"
-
G. Haran, E. A. Morlino, J. Matthes, R. H. Callender, and R. M. Hochstrasser, "Femtosecond polarized pump-probe and stimulated emission spectroscopy of the isomerization reaction of rhodopsin," J. Phys. Chem., A103, 2202-2207 (1999).
-
(1999)
J. Phys. Chem.
, vol.A103
, pp. 2202-2207
-
-
Haran, G.1
Morlino, E.A.2
Matthes, J.3
Callender, R.H.4
Hochstrasser, R.M.5
-
21
-
-
0037285444
-
"Rhodopsin structure, dynamics, and activation: A perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking"
-
W. L. Hubbell, C. Altenbach, C. M. Hubbell, and H. G. Khorana, "Rhodopsin structure, dynamics, and activation: A perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking," Adv. Protein Chem., 63, 243-290 (2003).
-
(2003)
Adv. Protein Chem.
, vol.63
, pp. 243-290
-
-
Hubbell, W.L.1
Altenbach, C.2
Hubbell, C.M.3
Khorana, H.G.4
-
22
-
-
0029664645
-
"Structure around C6-C7 bond of the chromophore in bathorhodopsin: Low-temperature spectroscopy of 6s-cis-locked bicyclic rhodopsin analogs"
-
Y. Imamoto, M. Sakai, Y. Katsuta, A. Wada, M. Ito, and Y. Shichida, "Structure around C6-C7 bond of the chromophore in bathorhodopsin: low-temperature spectroscopy of 6s-cis-locked bicyclic rhodopsin analogs," Biochemistry, 35, 6257-6262 (1996).
-
(1996)
Biochemistry
, vol.35
, pp. 6257-6262
-
-
Imamoto, Y.1
Sakai, M.2
Katsuta, Y.3
Wada, A.4
Ito, M.5
Shichida, Y.6
-
23
-
-
11244264401
-
"Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis"
-
J. M. Janz and J. D. Farrens, "Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis," J. Biol. Chem., 279, No. 53, 55886-55894 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, Issue.53
, pp. 55886-55894
-
-
Janz, J.M.1
Farrens, J.D.2
-
24
-
-
0038037706
-
"Stability of dark state rhodopsin is mediated by a conserved ion pair in intradiscal loop E-2"
-
J. M. Janz, J. F. Fay, and D. L. Farrens, "Stability of dark state rhodopsin is mediated by a conserved ion pair in intradiscal loop E-2," J. Biol. Chem., 278, No. 19, 16982-16991 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.19
, pp. 16982-16991
-
-
Janz, J.M.1
Fay, J.F.2
Farrens, D.L.3
-
25
-
-
0004016501
-
"Comparison of simple potential functions for simulating liquid water"
-
W. L. Jorgensen, J. Chandrasekhar, and J. D. Madura, "Comparison of simple potential functions for simulating liquid water," J. Chem. Phys., 79, 926-935 (1983).
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
-
26
-
-
0001316273
-
"Excited-state dynamics of rhodopsin probed by femtosecond fluorescence spectroscopy"
-
H. Kandori, Y. Furutani, S. Nishimura, Y. Shichida, H. Chosrowjan, Y. Shibata, and N. Mataga, "Excited-state dynamics of rhodopsin probed by femtosecond fluorescence spectroscopy," Chem. Phys. Lett., 334, 271-276 (2001).
-
(2001)
Chem. Phys. Lett.
, vol.334
, pp. 271-276
-
-
Kandori, H.1
Furutani, Y.2
Nishimura, S.3
Shichida, Y.4
Chosrowjan, H.5
Shibata, Y.6
Mataga, N.7
-
27
-
-
0000142880
-
"Femtosecond fluorescence study of the rhodopsin chromophore in solution"
-
H. Kandori, Y. Katsuda, M. Ito, and H. Sasabe, "Femtosecond fluorescence study of the rhodopsin chromophore in solution," J. Amer. Chem. Soc., 117, 2669-2670 (1995).
-
(1995)
J. Amer. Chem. Soc.
, vol.117
, pp. 2669-2670
-
-
Kandori, H.1
Katsuda, Y.2
Ito, M.3
Sasabe, H.4
-
28
-
-
0025085912
-
"Assembly of functional rhodopsin requires a disulfide bond between cysteine residues 110∠d 187"
-
S. S. Karnik and H. G. Khorana, "Assembly of functional rhodopsin requires a disulfide bond between cysteine residues 110∠d 187," J. Biol. Chem., 265, No. 29, 17520-17524 (1990).
-
(1990)
J. Biol. Chem.
, vol.265
, Issue.29
, pp. 17520-17524
-
-
Karnik, S.S.1
Khorana, H.G.2
-
29
-
-
0024110575
-
"Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin"
-
S. S. Karnik, T. P. Sakmar, H. B. Chen, and H. G. Khorana, "Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin," Proc. Natl. Acad. Sci. USA, 85, No. 22, 8459-8463 (1988).
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, Issue.22
, pp. 8459-8463
-
-
Karnik, S.S.1
Sakmar, T.P.2
Chen, H.B.3
Khorana, H.G.4
-
30
-
-
17444363303
-
"MD simulation on the structural changes and conformational dynamics of the retinal proteins (rhodopsins) in a water solvent"
-
ICMS-CSW2004 Tsukuba
-
K. Kholmurodov and T. Ebisuzaki, "MD simulation on the structural changes and conformational dynamics of the retinal proteins (rhodopsins) in a water solvent," ICMS-CSW2004 Tsukuba, C4, 9-11 (2004).
-
(2004)
, vol.C4
, pp. 9-11
-
-
Kholmurodov, K.1
Ebisuzaki, T.2
-
31
-
-
0037380822
-
"Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin"
-
J. E. Kim, M. J. Tauber, and R. A. Mathies, "Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin," Biophys. J., 84, 2491-2501 (2003).
-
(2003)
Biophys. J.
, vol.84
, pp. 2491-2501
-
-
Kim, J.E.1
Tauber, M.J.2
Mathies, R.A.3
-
32
-
-
0029881007
-
"MOLMOL: A program for display and analysis of macromolecular structure"
-
R. Koradi, M. Billeter, and K. Würthrich, "MOLMOL: A program for display and analysis of macromolecular structure," J. Mol. Graphics, 4, 51-55 (1996).
-
(1996)
J. Mol. Graphics
, vol.4
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Würthrich, K.3
-
33
-
-
0038159530
-
"Organization of the G-protein-coupled receptors rhodopsin and opsin in native membranes"
-
Y. Liang, D. Fotiadis, S. Filipek, D. A. Saprstein, K. Polczewski, and A. Engel, "Organization of the G-protein-coupled receptors rhodopsin and opsin in native membranes," J. Biol. Chem., 278, No. 24, 21655-21662 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.24
, pp. 21655-21662
-
-
Liang, Y.1
Fotiadis, D.2
Filipek, S.3
Saprstein, D.A.4
Polczewski, K.5
Engel, A.6
-
34
-
-
0344736728
-
"The molecular basis for the high photosensitivity of rhodopsin"
-
R. S. H. Liu and L. U. Colmenares, "The molecular basis for the high photosensitivity of rhodopsin," Proc. Natl. Acad. Sci. USA, 100, No. 25, 14639-14644 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.25
, pp. 14639-14644
-
-
Liu, R.S.H.1
Colmenares, L.U.2
-
35
-
-
0029943263
-
"Structure and function in rhodopsin: Correct folding and misfolding in two point mutants in the intradiscal domain of rhodopsin identified in retinitis pigmentosa"
-
X. Liu, P. Garriga, and H. G. Khorana, "Structure and function in rhodopsin: Correct folding and misfolding in two point mutants in the intradiscal domain of rhodopsin identified in retinitis pigmentosa," Proc. Natl. Acad. Sci. USA, 93, No. 10, 4554-4559 (1996).
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, Issue.10
, pp. 4554-4559
-
-
Liu, X.1
Garriga, P.2
Khorana, H.G.3
-
36
-
-
0343580431
-
"A comparison of the efficiency of G-protein activation by ligand-free and light-activated forms of rhodopsin"
-
T. J. Melia Jr., C. W. Cowan, J. K. Angleson, and T. G. Wensel, "A comparison of the efficiency of G-protein activation by ligand-free and light-activated forms of rhodopsin," Biophys. J., 73, 3182-3191 (1997).
-
(1997)
Biophys. J.
, vol.73
, pp. 3182-3191
-
-
Melia Jr., T.J.1
Cowan, C.W.2
Angleson, J.K.3
Wensel, T.G.4
-
37
-
-
0034784920
-
"Rhodopsin: Structural basis of molecular physiology"
-
S. T. Menson, M. Han, and T. P. Sakmar, "Rhodopsin: Structural basis of molecular physiology," Physiol. Rev., 81, No. 4, 1659-1688 (2001).
-
(2001)
Physiol. Rev.
, vol.81
, Issue.4
, pp. 1659-1688
-
-
Menson, S.T.1
Han, M.2
Sakmar, T.P.3
-
38
-
-
0037452868
-
"Sequence analyses of G-protein-coupled receptors: Similarities to rhodopsin"
-
T. Mirzadegan, G. Benko, S. Filipek, and K. Palczewski, "Sequence analyses of G-protein-coupled receptors: Similarities to rhodopsin," Biochemistry, 42, No. 10, 2759-2767 (2003).
-
(2003)
Biochemistry
, vol.42
, Issue.10
, pp. 2759-2767
-
-
Mirzadegan, T.1
Benko, G.2
Filipek, S.3
Palczewski, K.4
-
39
-
-
0342645331
-
-
MOE (used within 2002-2003, by licence of CAL RIKEN)
-
MOE, "MOE (Molecular Operating Environment) (http://www.chemcomp.com; used within 2002-2003, by licence of CAL RIKEN).
-
"MOE (Molecular Operating Environment)
-
-
-
40
-
-
0001099087
-
"Molecular dynamics machine: Special-purpose computer for molecular dynamics simulations"
-
T. Narumi, R. Susukita, T. Ebisuzaki, G. McNiven, and B. Elmegreen "Molecular dynamics machine: Special-purpose computer for molecular dynamics simulations," Mol. Simulation, 21, 401-408 (1999).
-
(1999)
Mol. Simulation
, vol.21
, pp. 401-408
-
-
Narumi, T.1
Susukita, R.2
Ebisuzaki, T.3
McNiven, G.4
Elmegreen, B.5
-
41
-
-
0013040083
-
"46 Tflops special-purpose computer for molecular dynamics simulations: (WINE-2)"
-
in: Beijing
-
T. Narumi, R. Susukita, H. Furusawa, and T. Ebisuzaki, "46 Tflops special-purpose computer for molecular dynamics simulations: (WINE-2)," in: Proceedings of the 5th International Conference on Signal Processing, Beijing (2000), pp. 575-582.
-
(2000)
Proceedings of the 5th International Conference on Signal Processing
, pp. 575-582
-
-
Narumi, T.1
Susukita, R.2
Furusawa, H.3
Ebisuzaki, T.4
-
42
-
-
0035336676
-
"Activation of rhodopsin: New insights from structural and biochemical studies"
-
T. Okada, O. P. Ernst, K. Palczewski, and K. P. Hofmann, "Activation of rhodopsin: New insights from structural and biochemical studies," Trends Biochem. Sci., 26, 318-324 (2001).
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 318-324
-
-
Okada, T.1
Ernst, O.P.2
Palczewski, K.3
Hofmann, K.P.4
-
43
-
-
4344581120
-
"The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure"
-
T. Okada, M. Sugihara, A.-N. Bondar, M. Elstner, P. Entel, and V. Buss, "The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure," J. Mol. Biol., 342, No. 2, 571-583 (2004).
-
(2004)
J. Mol. Biol.
, vol.342
, Issue.2
, pp. 571-583
-
-
Okada, T.1
Sugihara, M.2
Bondar, A.-N.3
Elstner, M.4
Entel, P.5
Buss, V.6
-
44
-
-
0034604451
-
"Crystal structure of rhodopsin: A G protein-coupled receptor"
-
K. Palczewski, T. Kumasaka, T. Hori, C. A. Behnke, H. Motoshima, B. A. Fox, I. Le Trong, D. C. Teller, T. Okada, R. E. Stenkamp, M. Yamamoto, and M. Miyano, "Crystal structure of rhodopsin: A G protein-coupled receptor," Science, 289, 739-745 (2000).
-
(2000)
Science
, vol.289
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le Trong, I.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
45
-
-
0029633186
-
"AMBER, a computer program for applying molecular mechanics,normal mode analysis, molecular dynamics and free energy calculations to elucidate the structures and energies of molecules"
-
D. A. Pearlman, D. A. Case, J. W. Caldwell, W. R. Ross, T. E. Cheatham, S. DeBolt,, D. Ferguson, G. Seibel, and P. Kollman, "AMBER, a computer program for applying molecular mechanics,normal mode analysis, molecular dynamics and free energy calculations to elucidate the structures and energies of molecules," Comp. Phys. Commun., 91, 1-41 (1995).
-
(1995)
Comp. Phys. Commun.
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.R.4
Cheatham, T.E.5
DeBolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
46
-
-
0027333436
-
"The first step in vision occurs in femtoseconds: Complete blue and red spectral studies"
-
L. A. Peteanu, R. W. Schoenlein, Q. Wang, R. A. Mathies, and C. V. Shank, "The first step in vision occurs in femtoseconds: Complete blue and red spectral studies," Proc. Natl. Acad. Sci. USA, 90, No. 24, 11762-11766 (1993).
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, Issue.24
, pp. 11762-11766
-
-
Peteanu, L.A.1
Schoenlein, R.W.2
Wang, Q.3
Mathies, R.A.4
Shank, C.V.5
-
47
-
-
0028296886
-
"A C-terminal peptide of bovine rhodopsin binds to the transducin alpha-subunit and facilitates its activation"
-
W. J. Phillips and R. A. Cerione, "A C-terminal peptide of bovine rhodopsin binds to the transducin alpha-subunit and facilitates its activation," Biochem. J., 299, No. 2, 351-357 (1994).
-
(1994)
Biochem. J.
, vol.299
, Issue.2
, pp. 351-357
-
-
Phillips, W.J.1
Cerione, R.A.2
-
48
-
-
0242443693
-
"Force fields for protein simulations"
-
J. W. Ponder and D. A. Case, "Force fields for protein simulations," Adv. Protein Chem., 66, 27-85 (2003).
-
(2003)
Adv. Protein Chem.
, vol.66
, pp. 27-85
-
-
Ponder, J.W.1
Case, D.A.2
-
49
-
-
0037015153
-
"Early steps of the intramolecular signal transduction in rhodopsin explored by molecular dynamics simulations"
-
U. F. Röhrig, L. Guidoni, and U. Rothlisberger, "Early steps of the intramolecular signal transduction in rhodopsin explored by molecular dynamics simulations," Biochemistry, 41, 10799-10809 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 10799-10809
-
-
Röhrig, U.F.1
Guidoni, L.2
Rothlisberger, U.3
-
50
-
-
33646940952
-
"Numerical integration of the Cartesian equations of proteins and nucleic acids"
-
J. P. Ryckaert, G. Ciccotti, and H. J. C. Berendsen, "Numerical integration of the Cartesian equations of proteins and nucleic acids," J. Comput. Phys., 23, 327-341 (1997).
-
(1997)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
51
-
-
0036930078
-
"Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin"
-
J. Saam, E. Tajkhorshid, S. Hayashi, and K. Schulten, "Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin," Biophys. J., 83, 3097-3112 (2002).
-
(2002)
Biophys. J.
, vol.83
, pp. 3097-3112
-
-
Saam, J.1
Tajkhorshid, E.2
Hayashi, S.3
Schulten, K.4
-
52
-
-
4944234024
-
"Deuterium NMR structure of retinal in the ground state of rhodopsin"
-
G. F. J. Salgado, A. V. Struts, K. Tanaka, N. Fujioka, K. Nakanishi, and M. F. Brown, "Deuterium NMR structure of retinal in the ground state of rhodopsin," Biochemistry, 43, 12819-12828 (2004).
-
(2004)
Biochemistry
, vol.43
, pp. 12819-12828
-
-
Salgado, G.F.J.1
Struts, A.V.2
Tanaka, K.3
Fujioka, N.4
Nakanishi, K.5
Brown, M.F.6
-
54
-
-
0042591319
-
"Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin"
-
S. A. Schadel, M. Heck, D. Maretzki, S. Filipek, D. C. Teller, K. Palczewski, and K. P. Hofmann, "Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin," J. Biol. Chem., 78, No. 27, 24896-24903 (2003).
-
(2003)
J. Biol. Chem.
, vol.78
, Issue.27
, pp. 24896-24903
-
-
Schadel, S.A.1
Heck, M.2
Maretzki, D.3
Filipek, S.4
Teller, D.C.5
Palczewski, K.6
Hofmann, K.P.7
-
55
-
-
4744366824
-
"The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket"
-
P. J. R. Spooner, J. M. Sharples, S. C. Goodall, P. H. M. Bovee-Geurts, M. A. Verhoeven, J. Lugtenberg, A. M. A. Pistorius, W. J. DeGrip, and A. Watts, "The ring of the rhodopsin chromophore in a hydrophobic activation switch within the binding pocket," J. Mol. Biol., 343, 719-730 (2004).
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 719-730
-
-
Spooner, P.J.R.1
Sharples, J.M.2
Goodall, S.C.3
Bovee-Geurts, P.H.M.4
Verhoeven, M.A.5
Lugtenberg, J.6
Pistorius, A.M.A.7
DeGrip, W.J.8
Watts, A.9
-
56
-
-
0035800032
-
"Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coup-led receptor (GPCRs)"
-
D. C. Teller, T. Okada, C. A. Blehnke, K. Palczewski, and R. E. Stenkamp, "Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coup-led receptor (GPCRs)," Biochemistry, 40, 7761-7772 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 7761-7772
-
-
Teller, D.C.1
Okada, T.2
Blehnke, C.A.3
Palczewski, K.4
Stenkamp, R.E.5
-
57
-
-
0030775615
-
"Arrangement of rhodopsin transmembrane alpha-helices"
-
V. M. Unger, P. A. Hargrave, J. M. Baldwin, and G. F. Schertler, "Arrangement of rhodopsin transmembrane alpha-helices," Nature, 389, No. 6647, 203-206 (1997).
-
(1997)
Nature
, vol.389
, Issue.6647
, pp. 203-206
-
-
Unger, V.M.1
Hargrave, P.A.2
Baldwin, J.M.3
Schertler, G.F.4
-
58
-
-
0034602145
-
"Distinct roles of the second and third cytoplasmic loops of bovine rhodopsin in G-protein activation"
-
T. Yamashita, A. Terakita, and Y. Shichida, "Distinct roles of the second and third cytoplasmic loops of bovine rhodopsin in G-protein activation," J. Biol. Chem., 275, No. 44, 34272-34279 (2000).
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.44
, pp. 34272-34279
-
-
Yamashita, T.1
Terakita, A.2
Shichida, Y.3
|